View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2859_low_13 (Length: 239)
Name: NF2859_low_13
Description: NF2859
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2859_low_13 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 174; Significance: 9e-94; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 174; E-Value: 9e-94
Query Start/End: Original strand, 18 - 239
Target Start/End: Original strand, 47344383 - 47344603
Alignment:
| Q |
18 |
ataactgacttagttgatcaatttatgcagattaagnnnnnnnnntgtatgcatagatgaaagagagaatcatacttttaatgtaaagagtatccatcat |
117 |
Q |
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| T |
47344383 |
ataactgacttagttgatcaatttatgcagattaagaaaaaaaa-tgtatgcatagatgaaagagagaatcatacttttaatgtaaagagtttccatcat |
47344481 |
T |
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| Q |
118 |
aatcataaatgtaatgcaaatagtattatttagatgatataactattgaaaatggaagatagttggtcatttttggacaaattatttttacaaacgaatc |
217 |
Q |
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| T |
47344482 |
aatcataaatgtaatgcaaatagtattaattagatgatataactattgaaaatggaagatagttggtcattttcggacaaattatttttacaaaggaatc |
47344581 |
T |
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| Q |
218 |
agttattttggaacggagggag |
239 |
Q |
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| T |
47344582 |
agttattttggaacggagggag |
47344603 |
T |
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Target: chr8 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 18 - 53
Target Start/End: Complemental strand, 23096268 - 23096233
Alignment:
| Q |
18 |
ataactgacttagttgatcaatttatgcagattaag |
53 |
Q |
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||||||||||||||||||||||| |||||||||||| |
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| T |
23096268 |
ataactgacttagttgatcaattcatgcagattaag |
23096233 |
T |
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