View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2859_low_14 (Length: 238)
Name: NF2859_low_14
Description: NF2859
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2859_low_14 |
 | |
|
| [»] chr3 (1 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 7 - 238
Target Start/End: Complemental strand, 3932977 - 3932746
Alignment:
| Q |
7 |
acatcatcaaaaagaattgtcaccttaaaatcttccaccttctccatatcagatggatcagcttgccatggtatgggtcgatttggtatttctattatta |
106 |
Q |
| |
|
|||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3932977 |
acatcaaccaaaagaattgtcaccttaaaatcttccaccttctccatatcagatggatcagcttgccatggtatgggtcgatttggtatttctattatta |
3932878 |
T |
|
| Q |
107 |
agagaccatcattctcaatctcacttattcttccaacactgtgatgtgtctcaccaccccaagcatatctaggttctgcaacagatcgcttcacacatac |
206 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
3932877 |
agagaccatcattctcaatctcacttattcttccaacactgtgatgtgtctcaccaccccaagcatatctaggttctgcgacagatcgcttcacacatac |
3932778 |
T |
|
| Q |
207 |
cctatcaccaatctgtaagacaaatacaaatc |
238 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
3932777 |
cctatcaccaatctgtaagacaaatacaaatc |
3932746 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University