View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2859_low_15 (Length: 236)

Name: NF2859_low_15
Description: NF2859
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2859_low_15
NF2859_low_15
[»] chr7 (2 HSPs)
chr7 (26-78)||(22348360-22348412)
chr7 (172-221)||(22348504-22348553)
[»] chr1 (2 HSPs)
chr1 (29-78)||(16001288-16001337)
chr1 (172-221)||(16001429-16001478)
[»] chr5 (2 HSPs)
chr5 (172-219)||(6837322-6837369)
chr5 (26-77)||(6837464-6837515)
[»] chr3 (2 HSPs)
chr3 (30-77)||(22598933-22598980)
chr3 (172-219)||(22599075-22599122)


Alignment Details
Target: chr7 (Bit Score: 45; Significance: 9e-17; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 26 - 78
Target Start/End: Original strand, 22348360 - 22348412
Alignment:
Q  26 ctgctggtgttgcaccaacaactgggctctaattccatttaatggtaaaaaac 78  Q
    ||||||||||||||||| ||||||| |||||||||||||||||||||||||||    
T  22348360 ctgctggtgttgcaccagcaactggactctaattccatttaatggtaaaaaac 22348412  T

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Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 172 - 221
Target Start/End: Original strand, 22348504 - 22348553
Alignment:
Q  172 gggatattttggagtcaaatgtgacttgtactacacaacacatgcctatg 221  Q
    ||||||||||||||||||||||| |||||||||||||||||||| |||||    
T  22348504 gggatattttggagtcaaatgtgccttgtactacacaacacatgtctatg 22348553  T

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Target: chr1 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 29 - 78
Target Start/End: Original strand, 16001288 - 16001337
Alignment:
Q  29 ctggtgttgcaccaacaactgggctctaattccatttaatggtaaaaaac 78  Q
    |||||||||||||| |||||||||||||||||||||| ||||||||||||    
T  16001288 ctggtgttgcaccagcaactgggctctaattccattttatggtaaaaaac 16001337  T

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Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 172 - 221
Target Start/End: Original strand, 16001429 - 16001478
Alignment:
Q  172 gggatattttggagtcaaatgtgacttgtactacacaacacatgcctatg 221  Q
    ||||||||||||||||||||||||||||||||||| | ||||||||||||    
T  16001429 gggatattttggagtcaaatgtgacttgtactacagagcacatgcctatg 16001478  T

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Target: chr5 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 172 - 219
Target Start/End: Complemental strand, 6837369 - 6837322
Alignment:
Q  172 gggatattttggagtcaaatgtgacttgtactacacaacacatgccta 219  Q
    ||||||||||| ||||||||||||||||||||||||| ||||||||||    
T  6837369 gggatattttgaagtcaaatgtgacttgtactacacagcacatgccta 6837322  T

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Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 26 - 77
Target Start/End: Complemental strand, 6837515 - 6837464
Alignment:
Q  26 ctgctggtgttgcaccaacaactgggctctaattccatttaatggtaaaaaa 77  Q
    |||||||||||| |||| |||||||| |||||||||||||||||||||||||    
T  6837515 ctgctggtgttggaccagcaactggggtctaattccatttaatggtaaaaaa 6837464  T

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Target: chr3 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 30 - 77
Target Start/End: Original strand, 22598933 - 22598980
Alignment:
Q  30 tggtgttgcaccaacaactgggctctaattccatttaatggtaaaaaa 77  Q
    |||||||| |||| ||||||||||||||||||||||||||||||||||    
T  22598933 tggtgttggaccagcaactgggctctaattccatttaatggtaaaaaa 22598980  T

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Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 172 - 219
Target Start/End: Original strand, 22599075 - 22599122
Alignment:
Q  172 gggatattttggagtcaaatgtgacttgtactacacaacacatgccta 219  Q
    ||||||||||| ||||||||||||||||||||||||| ||||||||||    
T  22599075 gggatattttgaagtcaaatgtgacttgtactacacagcacatgccta 22599122  T

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