View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2859_low_2 (Length: 543)
Name: NF2859_low_2
Description: NF2859
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2859_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 230; Significance: 1e-127; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 17 - 300
Target Start/End: Complemental strand, 40191853 - 40191570
Alignment:
| Q |
17 |
cacttctgacatgtgttagtgtttggcactgagacatgtgattactttagattgaaatatgcgattttctcaaattatgatcgatgttgatgtctcggtg |
116 |
Q |
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| T |
40191853 |
cacttctgacatgtgttagtgtttggtactgagacatgtgattactttggattgaaatatgcgattttctcaaattatgatcgatgttgatggctcggtg |
40191754 |
T |
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| Q |
117 |
tttgtgtcaggtgtatgtgtttcataggtttttatgtgaatgannnnnnnnnnnnnncagatcaagtatgtaggaaatgaggtagagaagaggagtttgc |
216 |
Q |
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| T |
40191753 |
tttgtgtcaggtgtatgtgtttcataggtttttatgtgaatgaatttttttctttttcagatcaagtatgtaggaaatgaggtagagaagaggagtttgc |
40191654 |
T |
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| Q |
217 |
aaatggaaggattgaatttaatggacaaaactttgtatgttcaaggagctcgtatttcattttgtatatgggatgttgcaggtg |
300 |
Q |
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| T |
40191653 |
aaatggaaggattgaatttaatggacaaaactttgtatgttcaaggagctcgtatttcattttgtatatgggatgttgcaggtg |
40191570 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 425 - 533
Target Start/End: Complemental strand, 40191445 - 40191337
Alignment:
| Q |
425 |
gagttagttattgatgaaaaattattatgcggggtttgagtaggtgacaaaaagtccttggatcaaattcccatggcttgtaaagatgcagttgctctac |
524 |
Q |
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| T |
40191445 |
gagttagttattgatgaaaaattattatgcggggtttgagtaggtgacaaaaagtccttggatcaaattcccatggcttgtaaagatgcagttgctctac |
40191346 |
T |
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| Q |
525 |
tgatgatgt |
533 |
Q |
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| T |
40191345 |
tgattatgt |
40191337 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 67 - 123
Target Start/End: Complemental strand, 8820445 - 8820389
Alignment:
| Q |
67 |
attgaaatatgcgattttctcaaattatgatcgatgttgatgtctcggtgtttgtgt |
123 |
Q |
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| T |
8820445 |
attgaattatgtgattttatcaaattattatcgatgttgacgtgtcagtgtttgtgt |
8820389 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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