View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2859_low_4 (Length: 412)

Name: NF2859_low_4
Description: NF2859
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2859_low_4
NF2859_low_4
[»] chr3 (2 HSPs)
chr3 (18-404)||(43489781-43490167)
chr3 (312-376)||(45013921-45013985)
[»] chr8 (1 HSPs)
chr8 (262-404)||(38653101-38653243)
[»] chr6 (3 HSPs)
chr6 (262-404)||(13409913-13410055)
chr6 (311-374)||(4038752-4038815)
chr6 (312-382)||(10554652-10554722)
[»] chr1 (1 HSPs)
chr1 (263-393)||(44331736-44331866)
[»] chr4 (2 HSPs)
chr4 (315-375)||(1726250-1726310)
chr4 (315-367)||(2428679-2428731)
[»] chr2 (1 HSPs)
chr2 (315-367)||(44648686-44648738)
[»] chr7 (3 HSPs)
chr7 (312-374)||(3160284-3160346)
chr7 (340-382)||(6568948-6568990)
chr7 (340-382)||(6583107-6583149)


Alignment Details
Target: chr3 (Bit Score: 367; Significance: 0; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 18 - 404
Target Start/End: Original strand, 43489781 - 43490167
Alignment:
Q  18 gaagattgtagatgagaagccacagaagaagccctaatcacattatcatcataaatattccttggagcaggaatacccgaaaactgaaaacgatcataaa 117  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||| || ||||||||||||||||||||||||||||||||    
T  43489781 gaagattgtagatgagaagccatagaagaagccctaatcacattatcatcataaacattccttgcaggaggaatacccgaaaactgaaaacgatcataaa 43489880  T
Q  118 agtttgtcgaatgctgagaagagttaggaaaaggtctagtatgaacaacaggatcagtagaagttgtaatagaaacaatcgaactcggtgaattcgaaac 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43489881 agtttgtcgaatgctgagaagagttaggaaaaggtctagtatgaacaacaggatcagtagaagttgtaatagaaacaatcgaactcggtgaattcgaaac 43489980  T
Q  218 gttccattgagtagtagtagtagctggtggagggttacgaagtgtaacattttcagggaaattgagtttggctttgttgcctctaaaacgaagagcagct 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43489981 gttccattgagtagtagtagtagctggtggagggttacgaagtgtaacattttcagggaaattgagtttggctttgttgcctctaaaacgaagagcagct 43490080  T
Q  318 tcatcatatgctctagcagcagcttcagctgtttcaaatgttcctaaccatactcttgctgctttgaatggatctcttatctctgct 404  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43490081 tcatcatatgctctagcagctgcttcagctgtttcaaatgttcctaaccatactcttgctgctttgaatggatctcttatctctgct 43490167  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 312 - 376
Target Start/End: Original strand, 45013921 - 45013985
Alignment:
Q  312 gcagcttcatcatatgctctagcagcagcttcagctgtttcaaatgttcctaaccatactcttgc 376  Q
    |||||||||||||||||    || ||||| ||||| |||||||||||||||| |||||| |||||    
T  45013921 gcagcttcatcatatgcaacggctgcagcctcagccgtttcaaatgttcctagccatacccttgc 45013985  T

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Target: chr8 (Bit Score: 79; Significance: 8e-37; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 262 - 404
Target Start/End: Original strand, 38653101 - 38653243
Alignment:
Q  262 taacattttcagggaaattgagtttggctttgttgcctctaaaacgaagagcagcttcatcatatgctctagcagcagcttcagctgtttcaaatgttcc 361  Q
    |||||||||||||||| |||||||| |||||||| ||||||||||| |  | ||||| |||||| ||| |||| ||| ||||||||||||||||||| ||    
T  38653101 taacattttcagggaagttgagttttgctttgtttcctctaaaacgcaatgaagcttgatcataggctttagctgcatcttcagctgtttcaaatgtacc 38653200  T
Q  362 taaccatactcttgctgctttgaatggatctcttatctctgct 404  Q
    ||||||||||||||  |||||||| ||||||||||||||||||    
T  38653201 taaccatactcttgtagctttgaaaggatctcttatctctgct 38653243  T

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Target: chr6 (Bit Score: 51; Significance: 4e-20; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 262 - 404
Target Start/End: Complemental strand, 13410055 - 13409913
Alignment:
Q  262 taacattttcagggaaattgagtttggctttgttgcctctaaaacgaagagcagcttcatcatatgctctagcagcagcttcagctgtttcaaatgttcc 361  Q
    |||||||||||||||| |||||||| ||| || | ||||| || |  |  |||||||||||||| || ||||| |||||||| ||||| || ||||||||    
T  13410055 taacattttcagggaagttgagttttgctctgcttcctctgaatctcaatgcagcttcatcataagccctagctgcagcttctgctgtgtcgaatgttcc 13409956  T
Q  362 taaccatactcttgctgctttgaatggatctcttatctctgct 404  Q
    || ||||||||||  |||||||  |||||||||||| ||||||    
T  13409955 tagccatactctttgtgctttgtgtggatctcttatttctgct 13409913  T

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Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 311 - 374
Target Start/End: Complemental strand, 4038815 - 4038752
Alignment:
Q  311 agcagcttcatcatatgctctagcagcagcttcagctgtttcaaatgttcctaaccatactctt 374  Q
    |||||| |||||||| |||||||||||  |||||||||| ||||| ||||||||||| ||||||    
T  4038815 agcagcctcatcataagctctagcagcttcttcagctgtatcaaaagttcctaaccaaactctt 4038752  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 312 - 382
Target Start/End: Complemental strand, 10554722 - 10554652
Alignment:
Q  312 gcagcttcatcatatgctctagcagcagcttcagctgtttcaaatgttcctaaccatactcttgctgcttt 382  Q
    |||||||||||||| ||  |||| |||||||||||||||||||| || || | ||| ||||||||| ||||    
T  10554722 gcagcttcatcataagcagtagctgcagcttcagctgtttcaaaggtgccaagccacactcttgctccttt 10554652  T

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Target: chr1 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 263 - 393
Target Start/End: Original strand, 44331736 - 44331866
Alignment:
Q  263 aacattttcagggaaattgagtttggctttgttgcctctaaaacgaagagcagcttcatcatatgctctagcagcagcttcagctgtttcaaatgttcct 362  Q
    ||||||||||||||| |||||||| ||| |||| ||||| || |  |  ||||||||||| || ||||| || |||||||| || ||||||||||||||     
T  44331736 aacattttcagggaagttgagtttcgctctgtttcctctgaatcttaatgcagcttcatcgtaagctcttgctgcagcttctgcagtttcaaatgttcca 44331835  T
Q  363 aaccatactcttgctgctttgaatggatctc 393  Q
    | |||||||||||||||||||  ||||||||    
T  44331836 agccatactcttgctgctttgtgtggatctc 44331866  T

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Target: chr4 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 315 - 375
Target Start/End: Complemental strand, 1726310 - 1726250
Alignment:
Q  315 gcttcatcatatgctctagcagcagcttcagctgtttcaaatgttcctaaccatactcttg 375  Q
    ||||||||||||||||| || ||| |||| ||||||||||||||||||||||||| |||||    
T  1726310 gcttcatcatatgctcttgctgcatcttctgctgtttcaaatgttcctaaccatattcttg 1726250  T

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Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 315 - 367
Target Start/End: Original strand, 2428679 - 2428731
Alignment:
Q  315 gcttcatcatatgctctagcagcagcttcagctgtttcaaatgttcctaacca 367  Q
    |||||||||||||||||||| ||  |||||||||| |||||||||||||||||    
T  2428679 gcttcatcatatgctctagctgcttcttcagctgtctcaaatgttcctaacca 2428731  T

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Target: chr2 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 315 - 367
Target Start/End: Original strand, 44648686 - 44648738
Alignment:
Q  315 gcttcatcatatgctctagcagcagcttcagctgtttcaaatgttcctaacca 367  Q
    ||||||||||||||| |||| ||  ||||||||||||||||||||||||||||    
T  44648686 gcttcatcatatgctttagctgcttcttcagctgtttcaaatgttcctaacca 44648738  T

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Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 312 - 374
Target Start/End: Complemental strand, 3160346 - 3160284
Alignment:
Q  312 gcagcttcatcatatgctctagcagcagcttcagctgtttcaaatgttcctaaccatactctt 374  Q
    |||||||||||||| ||||| |||||  |||||||||| ||||| ||||||||||| ||||||    
T  3160346 gcagcttcatcataggctcttgcagcttcttcagctgtatcaaaagttcctaaccaaactctt 3160284  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 340 - 382
Target Start/End: Complemental strand, 6568990 - 6568948
Alignment:
Q  340 cttcagctgtttcaaatgttcctaaccatactcttgctgcttt 382  Q
    |||||||||| ||||||||||||||||| ||||| ||||||||    
T  6568990 cttcagctgtatcaaatgttcctaaccaaactctagctgcttt 6568948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 340 - 382
Target Start/End: Complemental strand, 6583149 - 6583107
Alignment:
Q  340 cttcagctgtttcaaatgttcctaaccatactcttgctgcttt 382  Q
    |||||||||| ||||||||||||||||| ||||| ||||||||    
T  6583149 cttcagctgtgtcaaatgttcctaaccaaactctagctgcttt 6583107  T

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