View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2859_low_5 (Length: 348)
Name: NF2859_low_5
Description: NF2859
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2859_low_5 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 265; Significance: 1e-148; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 13 - 341
Target Start/End: Complemental strand, 15273712 - 15273384
Alignment:
| Q |
13 |
aatggagcaaatgagttgaagtaaaaatataggcaaattagagctgtaagtagcaatgaatagaaaattgagggaacaaatgttttggtgagtttttctt |
112 |
Q |
| |
|
|||||||||||||||| ||||||||| |||||||||| ||||||| ||||| || |||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
15273712 |
aatggagcaaatgagtggaagtaaaagtataggcaaaatagagctacaagtaacagcgaatagaaaattgagggaacaaatattttggtgagtttttctt |
15273613 |
T |
|
| Q |
113 |
tgaatgtgtttgtaattgttaccatcttctttcaaagtgttttcctattgtcccttttggctttgttctacgaaactgaattgaattcaagttactcctg |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||| |
|
|
| T |
15273612 |
tgaatgtgtttgtaattgttaccatcttctttcaaagtgttttcctattgtcccttttggctttgttctatgaaactgaattgaattcaacttactcctg |
15273513 |
T |
|
| Q |
213 |
atgatttaaattaaactctttcaactttattcttctatctttttcttccatgattgttggatcttgtagtatatccagaaaattttctaataaattgtga |
312 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
15273512 |
atgaattaaattaaactctttcaactttattcttctatctctttcttccatgattgttggatcttgtagtatatccagaaaattttctaataaatcgtga |
15273413 |
T |
|
| Q |
313 |
atcatatgtacctaaattatattttggta |
341 |
Q |
| |
|
|||||||||| ||||||||||||||||| |
|
|
| T |
15273412 |
ttcatatgtacataaattatattttggta |
15273384 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 229 - 284
Target Start/End: Original strand, 15288929 - 15288984
Alignment:
| Q |
229 |
tctttcaactttattcttctatctttttcttccatgattgttggatcttgtagtat |
284 |
Q |
| |
|
||||||||||||||| | |||||| |||||||||||||||||||||||||| |||| |
|
|
| T |
15288929 |
tctttcaactttattttactatctctttcttccatgattgttggatcttgttgtat |
15288984 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 235 - 294
Target Start/End: Complemental strand, 15273086 - 15273027
Alignment:
| Q |
235 |
aactttattcttctatctttttcttccatgattgttggatcttgtagtatatccagaaaa |
294 |
Q |
| |
|
||||||||| |||||||| | |||||||||||||||||||||| | |||| || |||||| |
|
|
| T |
15273086 |
aactttatttttctatctctatcttccatgattgttggatcttattgtatctctagaaaa |
15273027 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 89; Significance: 7e-43; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 13 - 149
Target Start/End: Original strand, 11821446 - 11821582
Alignment:
| Q |
13 |
aatggagcaaatgagttgaagtaaaaatataggcaaattagagctgtaagtagcaatgaatagaaaattgagggaacaaatgttttggtgagtttttctt |
112 |
Q |
| |
|
||||||||||||||| ||||||||| |||||||||| ||||||| | ||||||| ||||||||||| ||||| ||||||||||||||||||||||||| |
|
|
| T |
11821446 |
aatggagcaaatgaggagaagtaaaagtataggcaaactagagctaaaggtagcaaagaatagaaaatggagggcacaaatgttttggtgagtttttctt |
11821545 |
T |
|
| Q |
113 |
tgaatgtgtttgtaattgttaccatcttctttcaaag |
149 |
Q |
| |
|
||||||||||| ||||||||| ||||||||||||||| |
|
|
| T |
11821546 |
tgaatgtgtttataattgttatcatcttctttcaaag |
11821582 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 74; Significance: 7e-34; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 15 - 180
Target Start/End: Original strand, 44249710 - 44249875
Alignment:
| Q |
15 |
tggagcaaatgagttgaagtaaaaatataggcaaattagagctgtaagtagcaatgaatagaaaattgagggaacaaatgttttggtgagtttttctttg |
114 |
Q |
| |
|
|||||||||||||| ||||||||| ||||| ||||||||||| | |||| | |||||||||||||||||| |||||||||||||||| |||||||||| |
|
|
| T |
44249710 |
tggagcaaatgagtggaagtaaaagtatagacaaattagagcgaaaggtagtagtgaatagaaaattgagggcacaaatgttttggtgaatttttctttg |
44249809 |
T |
|
| Q |
115 |
aatgtgtttgtaattgttaccatcttctttcaaagtgttttcctattgtcccttttggctttgttc |
180 |
Q |
| |
|
|||| |||||| |||| |||||| |||||||| |||||| |||| || |||||||||||||| |
|
|
| T |
44249810 |
aatggttttgtagttgtggtcatcttttttcaaagcgttttcttattctcgtttttggctttgttc |
44249875 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 13 - 120
Target Start/End: Original strand, 44253318 - 44253425
Alignment:
| Q |
13 |
aatggagcaaatgagttgaagtaaaaatataggcaaattagagctgtaagtagcaatgaatagaaaattgagggaacaaatgttttggtgagtttttctt |
112 |
Q |
| |
|
|||||||||||||||| ||||||||| ||||| |||||||||||| || |||||| ||||||||| |||||| | | ||||||||||||||||||||||| |
|
|
| T |
44253318 |
aatggagcaaatgagtggaagtaaaagtatagacaaattagagctataggtagcagtgaatagaagattgagtgcaaaaatgttttggtgagtttttctt |
44253417 |
T |
|
| Q |
113 |
tgaatgtg |
120 |
Q |
| |
|
|||||||| |
|
|
| T |
44253418 |
tgaatgtg |
44253425 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University