View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2860_high_3 (Length: 540)
Name: NF2860_high_3
Description: NF2860
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2860_high_3 |
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Alignment Details
Target: chr5 (Bit Score: 350; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 127 - 537
Target Start/End: Complemental strand, 30865626 - 30865216
Alignment:
| Q |
127 |
atttaacaaaagttttattttaaaagttcacagtaattttgataaattcaccaaggtgattgtaaatattatggaagggtcaattccttgttttctttcc |
226 |
Q |
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| T |
30865626 |
atttaacaaaagttttattttaaaagttcacagtaattttgataaattcaccaaggtgattgtaaatattatggaagggtcaattccttgttttgtttcc |
30865527 |
T |
|
| Q |
227 |
nnnnnnntacactgtctttggccccatatttctcatctttcaaactttcattactaaattgttaagtttccaactgcacattactgattgattttgcatc |
326 |
Q |
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| T |
30865526 |
aaaaaaatacactgtctttggccccatatttctcatctttcaaactttcattactaaattgttaagtttccaactacacattactgattgattttgcatc |
30865427 |
T |
|
| Q |
327 |
accaggtcaagacaaaagtggaaatgtcatattgaaaattatatgtgcttttgcttgtttgcttaatggtatcatcatagaaatatgccaccaagtgtga |
426 |
Q |
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| T |
30865426 |
accaggtcaagacaaaagtggaaatgtcataatgaaaattatatgtgcttttgcttgtttgcttaatggtatcatcatagaaatatgccaccaagtgtga |
30865327 |
T |
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| Q |
427 |
atgtaatgtaaaaataaaataaaggtttgaggaaaatgaaagactttggaatcttctgaattttcctgcaagccaaagaaaacaaaggtatccaactagt |
526 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||| |||||||||||||||| |
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| T |
30865326 |
atgtaatgtaaacataaaataaaggtttgaggaaaatgaaagactttggaatcttctgaatttttctgcaagtcaaagaaaaacaaggtatccaactagt |
30865227 |
T |
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| Q |
527 |
tcatctcactc |
537 |
Q |
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|| | |||||| |
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| T |
30865226 |
tcttttcactc |
30865216 |
T |
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