View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2860_low_1 (Length: 807)
Name: NF2860_low_1
Description: NF2860
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2860_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 547; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 547; E-Value: 0
Query Start/End: Original strand, 16 - 638
Target Start/End: Complemental strand, 33543598 - 33542976
Alignment:
| Q |
16 |
ctgtgttgcaaaaatctgtggagttattccaattgcttaaagctgaaggaaaattcaattgttgttgaattcttaggagggtttgagtgtgtgaggattg |
115 |
Q |
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| T |
33543598 |
ctgtgttgcaaaaatctgtggagttattccaattgcttaaagctgaaggaaaattcaattgttgttgaattcttaggagggtttgagtgtgtgaggattg |
33543499 |
T |
|
| Q |
116 |
aagctgttctgaatgatttatagaaagtaaaatagtaaccaaaacaaaaaacacagataccatagnnnnnnnnnnnnnnnnnnnnattatattctacaaa |
215 |
Q |
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| T |
33543498 |
aagctgttctgaatgatttatagaaagtaaaatagtaaccaaaacaaaaaacacagataccatagtgtttttgttttgttttgttattatattctaaaga |
33543399 |
T |
|
| Q |
216 |
agcattggagttctctcaaaattgaagccttgaaacacaagcagaaaccctgcaattacaagaagttatgttaccttaaacaaacataattttttcgcaa |
315 |
Q |
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| T |
33543398 |
agcattggagttctctcaaaattgaagccttgaaacacaagcagaaaccctgcaattacaagaagttatgttaccttaaacaaacataattttttcgcaa |
33543299 |
T |
|
| Q |
316 |
gaatcaactgaattcaagcattataactcaacactatgaaattcattatttcacaggaaaccaacaaaaagtacaagaaaagttcaatcataacaaaata |
415 |
Q |
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| T |
33543298 |
gaatcaactgaattcaagcattataactcaacactatgaaattcattatttcacaggaaaccaacaaaaagtacaagaaaagttcaatcataacaaaata |
33543199 |
T |
|
| Q |
416 |
ccatgaaaactgaagaacttccccaacagattggatgataaatcagtgagtgctattaatatgagttaagtagtgtttagactaaattgtttttctttct |
515 |
Q |
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| T |
33543198 |
ccatgaaaactgaagaacttccccaacagattggatgataaatcagtgagtgctattaatatgagttaagtagtgtttatactaaagtgtttttctttct |
33543099 |
T |
|
| Q |
516 |
gcttcaaccaaagccaagtaaatttgattgttttagacttttagtagcagatatttttcacttgcttccaagatcaccaaacaactcacaatgaatcttc |
615 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33543098 |
gcttcaaccaaagccaagtaaatttgattgttttagacttttagtagcagatatttttcacttgcttccaagatcaccaaacaactcacaatgaatcttc |
33542999 |
T |
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| Q |
616 |
cacaaataaaccaatttattttt |
638 |
Q |
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| T |
33542998 |
cacaaataaaccaatttattttt |
33542976 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 702 - 785
Target Start/End: Complemental strand, 33542910 - 33542827
Alignment:
| Q |
702 |
cttctatacctcacaccataatagaaaaaatccaaaagatattcagaaagtggacaactacaagtctccaaatcctacagaagc |
785 |
Q |
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| T |
33542910 |
cttctatacctcacaccataatggaaaaaatccaaaagatattcagaaagtggacaactacaagtctccaaatcctacagaagc |
33542827 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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