View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2860_low_2 (Length: 763)

Name: NF2860_low_2
Description: NF2860
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2860_low_2
NF2860_low_2
[»] chr8 (25 HSPs)
chr8 (396-756)||(6949887-6950247)
chr8 (242-331)||(13000402-13000491)
chr8 (243-327)||(4055595-4055679)
chr8 (243-301)||(25869245-25869303)
chr8 (262-339)||(28769337-28769414)
chr8 (269-339)||(8062324-8062394)
chr8 (261-335)||(8578572-8578646)
chr8 (243-301)||(14949899-14949957)
chr8 (245-295)||(41620272-41620322)
chr8 (258-335)||(779055-779132)
chr8 (250-339)||(31705080-31705169)
chr8 (234-334)||(11569427-11569527)
chr8 (256-292)||(38421306-38421342)
chr8 (260-339)||(11795087-11795166)
chr8 (260-339)||(12361187-12361266)
chr8 (260-339)||(12851171-12851250)
chr8 (260-331)||(20672753-20672824)
chr8 (280-339)||(38036128-38036187)
chr8 (247-338)||(39551192-39551283)
chr8 (266-325)||(42215084-42215143)
chr8 (262-304)||(6950352-6950394)
chr8 (260-334)||(30277241-30277315)
chr8 (256-285)||(9572919-9572948)
chr8 (258-327)||(33553247-33553316)
chr8 (396-429)||(37776842-37776875)
[»] chr5 (38 HSPs)
chr5 (93-285)||(18906453-18906641)
chr5 (269-426)||(18906255-18906407)
chr5 (260-339)||(32408588-32408667)
chr5 (248-306)||(35963269-35963327)
chr5 (266-339)||(8651355-8651427)
chr5 (243-327)||(12242689-12242773)
chr5 (260-327)||(18543193-18543259)
chr5 (260-334)||(36639522-36639596)
chr5 (269-334)||(7319013-7319078)
chr5 (258-339)||(10272425-10272506)
chr5 (243-304)||(28586745-28586806)
chr5 (248-301)||(29590613-29590666)
chr5 (258-339)||(32194073-32194154)
chr5 (264-337)||(34690870-34690943)
chr5 (258-327)||(37611209-37611278)
chr5 (258-327)||(37787939-37788008)
chr5 (243-295)||(11700357-11700409)
chr5 (265-337)||(15074750-15074822)
chr5 (267-335)||(30217081-30217149)
chr5 (243-339)||(32172648-32172744)
chr5 (261-337)||(33533536-33533612)
chr5 (396-427)||(6717036-6717067)
chr5 (268-339)||(9174811-9174881)
chr5 (240-291)||(18700427-18700478)
chr5 (248-295)||(38766529-38766576)
chr5 (260-327)||(40205070-40205137)
chr5 (260-339)||(41957447-41957526)
chr5 (281-339)||(6183439-6183497)
chr5 (269-339)||(7319401-7319471)
chr5 (269-339)||(12975342-12975411)
chr5 (242-328)||(35095764-35095850)
chr5 (260-301)||(1899187-1899228)
chr5 (243-296)||(6109521-6109574)
chr5 (263-308)||(10303822-10303867)
chr5 (261-334)||(11707055-11707128)
chr5 (258-327)||(17368683-17368752)
chr5 (262-339)||(34975359-34975436)
chr5 (262-339)||(37526197-37526274)
[»] chr3 (33 HSPs)
chr3 (243-333)||(37273135-37273225)
chr3 (242-304)||(43115086-43115148)
chr3 (248-339)||(41724206-41724298)
chr3 (260-339)||(23785250-23785329)
chr3 (241-296)||(37155039-37155094)
chr3 (241-296)||(37200394-37200449)
chr3 (261-336)||(38462279-38462354)
chr3 (269-339)||(2719463-2719533)
chr3 (244-284)||(14598533-14598573)
chr3 (262-334)||(20669172-20669244)
chr3 (261-339)||(13709820-13709898)
chr3 (274-324)||(23793594-23793644)
chr3 (258-296)||(36200134-36200172)
chr3 (259-325)||(53848058-53848124)
chr3 (262-295)||(11040612-11040645)
chr3 (258-339)||(33725868-33725949)
chr3 (260-325)||(54837030-54837095)
chr3 (258-302)||(1810009-1810053)
chr3 (266-322)||(21862177-21862233)
chr3 (260-304)||(37825152-37825196)
chr3 (258-306)||(42745066-42745114)
chr3 (260-328)||(54180776-54180844)
chr3 (261-304)||(11039336-11039379)
chr3 (260-295)||(12923321-12923356)
chr3 (258-305)||(29771867-29771914)
chr3 (261-304)||(45432936-45432979)
chr3 (258-304)||(31010432-31010478)
chr3 (280-334)||(42808972-42809026)
chr3 (243-325)||(43397836-43397918)
chr3 (243-320)||(2081062-2081139)
chr3 (314-383)||(24235733-24235802)
chr3 (298-339)||(25964438-25964479)
chr3 (258-327)||(48048976-48049045)
[»] chr7 (25 HSPs)
chr7 (243-339)||(33645940-33646035)
chr7 (245-305)||(39568305-39568365)
chr7 (241-339)||(39551525-39551623)
chr7 (261-339)||(44151477-44151555)
chr7 (241-295)||(21247965-21248019)
chr7 (243-304)||(39360053-39360114)
chr7 (264-327)||(24363601-24363664)
chr7 (243-334)||(39334193-39334284)
chr7 (256-331)||(45078281-45078356)
chr7 (261-331)||(7244683-7244753)
chr7 (246-328)||(9423576-9423658)
chr7 (260-334)||(18749813-18749887)
chr7 (262-308)||(33894653-33894699)
chr7 (242-304)||(39539759-39539821)
chr7 (258-307)||(47134751-47134800)
chr7 (258-302)||(28844522-28844566)
chr7 (260-328)||(42281510-42281578)
chr7 (263-339)||(46056009-46056085)
chr7 (259-334)||(4966156-4966231)
chr7 (243-305)||(3500946-3501008)
chr7 (258-304)||(12234883-12234929)
chr7 (258-304)||(46082066-46082112)
chr7 (243-296)||(29287265-29287318)
chr7 (261-302)||(39345503-39345544)
chr7 (258-339)||(48157114-48157195)
[»] chr4 (20 HSPs)
chr4 (244-334)||(53673638-53673728)
chr4 (105-169)||(54580562-54580626)
chr4 (260-327)||(23819096-23819163)
chr4 (106-169)||(45277554-45277617)
chr4 (261-335)||(34398682-34398756)
chr4 (254-331)||(55547034-55547111)
chr4 (263-339)||(7694009-7694085)
chr4 (276-339)||(18628555-18628618)
chr4 (267-390)||(45128313-45128436)
chr4 (261-339)||(52754595-52754672)
chr4 (260-308)||(43824309-43824357)
chr4 (273-336)||(46110201-46110264)
chr4 (258-327)||(2996580-2996649)
chr4 (258-327)||(4471175-4471244)
chr4 (243-304)||(27123331-27123392)
chr4 (262-339)||(28300297-28300374)
chr4 (258-331)||(28615526-28615599)
chr4 (260-301)||(29467620-29467661)
chr4 (255-296)||(46201386-46201427)
chr4 (258-339)||(50800024-50800104)
[»] scaffold0044 (1 HSPs)
scaffold0044 (248-339)||(51936-52025)
[»] chr6 (32 HSPs)
chr6 (241-304)||(9027608-9027671)
chr6 (258-327)||(9667979-9668048)
chr6 (263-327)||(31583686-31583750)
chr6 (260-327)||(2160933-2161000)
chr6 (258-392)||(281842-281976)
chr6 (260-339)||(3168257-3168336)
chr6 (256-335)||(19275628-19275707)
chr6 (248-339)||(28088207-28088297)
chr6 (258-304)||(6536977-6537023)
chr6 (258-296)||(20377914-20377952)
chr6 (262-304)||(27909636-27909678)
chr6 (247-333)||(33887831-33887917)
chr6 (250-307)||(733163-733220)
chr6 (258-327)||(2112207-2112276)
chr6 (258-327)||(10031739-10031808)
chr6 (261-325)||(4420652-4420716)
chr6 (250-334)||(6647387-6647471)
chr6 (260-304)||(7785740-7785784)
chr6 (260-339)||(283090-283169)
chr6 (242-325)||(2455819-2455902)
chr6 (242-325)||(2514711-2514794)
chr6 (243-326)||(10616520-10616603)
chr6 (268-327)||(20351155-20351214)
chr6 (260-323)||(34939755-34939818)
chr6 (396-426)||(8470132-8470162)
chr6 (258-304)||(30863276-30863322)
chr6 (243-301)||(34939546-34939604)
chr6 (243-296)||(2034425-2034478)
chr6 (260-301)||(2167154-2167195)
chr6 (260-301)||(2178787-2178828)
chr6 (243-304)||(2460130-2460191)
chr6 (258-339)||(4006709-4006790)
[»] chr2 (26 HSPs)
chr2 (242-337)||(32821806-32821901)
chr2 (258-325)||(34652030-34652097)
chr2 (251-334)||(36852472-36852555)
chr2 (242-296)||(9878660-9878714)
chr2 (258-331)||(7282999-7283072)
chr2 (700-753)||(18045573-18045626)
chr2 (258-327)||(43065444-43065513)
chr2 (258-330)||(1939326-1939398)
chr2 (258-338)||(9556235-9556315)
chr2 (260-335)||(29316771-29316846)
chr2 (242-304)||(14299609-14299671)
chr2 (258-295)||(30538167-30538204)
chr2 (258-307)||(41809239-41809288)
chr2 (258-327)||(43910993-43911062)
chr2 (261-337)||(16867736-16867812)
chr2 (256-304)||(25796192-25796240)
chr2 (260-304)||(28677655-28677699)
chr2 (263-327)||(35379015-35379079)
chr2 (260-339)||(8017429-8017508)
chr2 (258-317)||(14451044-14451103)
chr2 (258-333)||(38077067-38077142)
chr2 (256-302)||(10285892-10285938)
chr2 (243-301)||(33525946-33526004)
chr2 (247-304)||(1160654-1160711)
chr2 (258-339)||(43141866-43141947)
chr2 (258-295)||(44606104-44606141)
[»] chr1 (34 HSPs)
chr1 (260-339)||(28689448-28689529)
chr1 (258-339)||(17420198-17420279)
chr1 (243-307)||(19412576-19412640)
chr1 (243-334)||(27140478-27140569)
chr1 (261-328)||(35017582-35017649)
chr1 (243-339)||(38867810-38867906)
chr1 (268-339)||(6659509-6659580)
chr1 (260-327)||(12564495-12564562)
chr1 (274-373)||(34179882-34179981)
chr1 (260-339)||(34290231-34290310)
chr1 (267-338)||(39347970-39348041)
chr1 (261-339)||(4549225-4549303)
chr1 (258-335)||(4868399-4868476)
chr1 (266-339)||(6279394-6279467)
chr1 (262-339)||(14629964-14630041)
chr1 (261-306)||(29007713-29007758)
chr1 (258-339)||(30371143-30371224)
chr1 (260-296)||(12477283-12477319)
chr1 (260-339)||(4622088-4622167)
chr1 (258-325)||(4699609-4699676)
chr1 (260-335)||(7136994-7137069)
chr1 (261-304)||(7761608-7761651)
chr1 (258-301)||(15579515-15579558)
chr1 (260-327)||(27963366-27963433)
chr1 (268-331)||(28077073-28077136)
chr1 (258-321)||(46252676-46252739)
chr1 (261-327)||(16981933-16981999)
chr1 (243-301)||(33722380-33722438)
chr1 (261-295)||(37941982-37942016)
chr1 (258-304)||(49517091-49517137)
chr1 (243-296)||(6262776-6262829)
chr1 (260-325)||(10199404-10199469)
chr1 (255-296)||(34278684-34278725)
chr1 (280-333)||(51929715-51929768)
[»] scaffold0286 (1 HSPs)
scaffold0286 (260-327)||(16117-16184)
[»] scaffold0012 (1 HSPs)
scaffold0012 (244-284)||(38642-38682)
[»] scaffold0147 (1 HSPs)
scaffold0147 (248-292)||(12688-12732)
[»] scaffold0024 (1 HSPs)
scaffold0024 (243-327)||(27583-27667)
[»] scaffold0311 (1 HSPs)
scaffold0311 (258-301)||(10611-10654)
[»] scaffold0153 (2 HSPs)
scaffold0153 (262-324)||(6492-6554)
scaffold0153 (262-324)||(13512-13574)
[»] scaffold0254 (1 HSPs)
scaffold0254 (260-301)||(3506-3547)


Alignment Details
Target: chr8 (Bit Score: 353; Significance: 0; HSPs: 25)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 396 - 756
Target Start/End: Complemental strand, 6950247 - 6949887
Alignment:
Q  396 taagcacttaattaagttgtttatctaaacaatgcctaaataggaatttgatccttaaacacatcccacccattcaagaggcaggtttccatttcaaata 495  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6950247 taagcacttaattaagttgtttatctaaacaatgcctaaataggaatttgatccttaaacacatcccacccattcaagaggcaggtttccatttcaaata 6950148  T
Q  496 tctcaagttcagacctcaagatcatgtatgagttagatggaattcaagacgagtaacacggataacatgcattctgcatggatttgtttttgaaacagaa 595  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6950147 tctcaagttcagacctcaagatcatgtatgagttagatggaattcaagacgagtaacacggataacatgcattctgcatggatttgtttttgaaacagaa 6950048  T
Q  596 gttcaatcatggaattctttaacatgatactacaaaaagtgtattcttctcacctcatcttcagatctaggtggggttggaagaggaactgcttcttgat 695  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6950047 gttcaatcatggaattctttaacatgatactacaaaaagtgtattcttctcacctcatcttcagatctaggtggggttggaagaggaactgcttcttgat 6949948  T
Q  696 tgaacctttgaacattgtatagttccataaccttgtcatagttctctgcccaccatctctg 756  Q
    ||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||    
T  6949947 tgaacctttgaacattgtacagttccataaccttgtcatagttctccgcccaccatctctg 6949887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 242 - 331
Target Start/End: Original strand, 13000402 - 13000491
Alignment:
Q  242 aagagtttatggacataacttatgacatgtccataagttgttttcggcttatttcgataagctttccgagacagcttatgaaaacagttt 331  Q
    ||||||||||||  | ||||||||||||||||| ||||||||||| ||||||||| ||||||||| |  ||||| |||||||| ||||||    
T  13000402 aagagtttatggtaacaacttatgacatgtccacaagttgttttcagcttatttccataagctttgcatgacagtttatgaaagcagttt 13000491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 243 - 327
Target Start/End: Original strand, 4055595 - 4055679
Alignment:
Q  243 agagtttatggacataacttatgacatgtccataagttgttttcggcttatttcgataagctttccgagacagcttatgaaaaca 327  Q
    ||||||||| || ||||||||||||||||||||||  ||||||| |||||||||  |||||| || |||| ||||||||||||||    
T  4055595 agagtttatagaaataacttatgacatgtccataaactgttttcagcttatttccttaagctctctgagatagcttatgaaaaca 4055679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 243 - 301
Target Start/End: Original strand, 25869245 - 25869303
Alignment:
Q  243 agagtttatggacataacttatgacatgtccataagttgttttcggcttatttcgataa 301  Q
    ||||| |||||| ||||||||||||||||||||||||||||||| ||||||||| ||||    
T  25869245 agagtctatggaaataacttatgacatgtccataagttgttttcagcttatttccataa 25869303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 262 - 339
Target Start/End: Original strand, 28769337 - 28769414
Alignment:
Q  262 tatgacatgtccataagttgttttcggcttatttcgataagctttccgagacagcttatgaaaacagtttatagctta 339  Q
    ||||| ||||||||||||||||||| ||||||||| |||| || ||| | | ||||||||||||||| ||||||||||    
T  28769337 tatgatatgtccataagttgttttcagcttatttccataaactctccaaaatagcttatgaaaacagcttatagctta 28769414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 269 - 339
Target Start/End: Complemental strand, 8062394 - 8062324
Alignment:
Q  269 tgtccataagttgttttcggcttatttcgataagctttccgagacagcttatgaaaacagtttatagctta 339  Q
    |||||||||| ||||||| ||||||||| |||| || ||  ||| ||||||||||||||| ||||||||||    
T  8062394 tgtccataagatgttttcagcttatttccataatctctctaagatagcttatgaaaacagcttatagctta 8062324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 261 - 335
Target Start/End: Complemental strand, 8578646 - 8578572
Alignment:
Q  261 ttatgacatgtccataagttgttttcggcttatttcgataagctttccgagacagcttatgaaaacagtttatag 335  Q
    |||||||||||| | ||| | ||||||||||||||| | ||||| |||| || ||||||||||||||| ||||||    
T  8578646 ttatgacatgtctagaagctattttcggcttatttctacaagctctccgggatagcttatgaaaacagcttatag 8578572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 243 - 301
Target Start/End: Complemental strand, 14949957 - 14949899
Alignment:
Q  243 agagtttatggacataacttatgacatgtccataagttgttttcggcttatttcgataa 301  Q
    |||| ||||| | ||||||||||||||||||||||| ||||||| ||||||||| ||||    
T  14949957 agagcttatgaaaataacttatgacatgtccataagctgttttcagcttatttctataa 14949899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 245 - 295
Target Start/End: Original strand, 41620272 - 41620322
Alignment:
Q  245 agtttatggacataacttatgacatgtccataagttgttttcggcttattt 295  Q
    |||||||||| | || |||||||||||||||||||||||||| ||||||||    
T  41620272 agtttatggaaacaaattatgacatgtccataagttgttttccgcttattt 41620322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 258 - 335
Target Start/End: Original strand, 779055 - 779132
Alignment:
Q  258 aacttatgacatgtccataagttgttttcggcttatttcgataagctttccgagacagcttatgaaaacagtttatag 335  Q
    |||||||||||||| ||||||||||||||  ||||||| | ||  || ||| ||| || |||||||||||||||||||    
T  779055 aacttatgacatgttcataagttgttttcatcttattttggtacactctccaagatagtttatgaaaacagtttatag 779132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 250 - 339
Target Start/End: Complemental strand, 31705169 - 31705080
Alignment:
Q  250 atggacataacttatgacatgtccataagttgttttcggcttatttcgataagctttccgagacagcttatgaaaacagtttatagctta 339  Q
    ||||| ||| |||| || |||| |||||| ||||||| ||||||||| |||| || ||   |||||||||||||||||| ||||||||||    
T  31705169 atggaaatagcttaagagatgtgcataagctgttttcagcttatttccataaactctcaaggacagcttatgaaaacagcttatagctta 31705080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 234 - 334
Target Start/End: Original strand, 11569427 - 11569527
Alignment:
Q  234 ctgttaaaaagagtttatggacataacttatgacatgtccataagttgttttcggcttatttcgataagctttccgagacagcttatgaaaacagtttat 333  Q
    ||||| || |||| ||||||| | | |||||||||||| |||||||||||||| ||||||||  | || || |||  || ||||||||||||||| ||||    
T  11569427 ctgtttaagagagcttatggaaacagcttatgacatgtacataagttgttttcagcttattttcaaaatctctccatgatagcttatgaaaacagcttat 11569526  T
Q  334 a 334  Q
    |    
T  11569527 a 11569527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 256 - 292
Target Start/End: Complemental strand, 38421342 - 38421306
Alignment:
Q  256 ataacttatgacatgtccataagttgttttcggctta 292  Q
    ||||||||||||||||||||||||||||||| |||||    
T  38421342 ataacttatgacatgtccataagttgttttcagctta 38421306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 260 - 339
Target Start/End: Complemental strand, 11795166 - 11795087
Alignment:
Q  260 cttatgacatgtccataagttgttttcggcttatttcgataagctttccgagacagcttatgaaaacagtttatagctta 339  Q
    ||||||||||||||||||  ||||||| ||||||||| ||||||| |||   | ||||||||||| ||| ||||| ||||    
T  11795166 cttatgacatgtccataacctgttttcagcttatttccataagctctccataatagcttatgaaatcagcttataactta 11795087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 260 - 339
Target Start/End: Complemental strand, 12361266 - 12361187
Alignment:
Q  260 cttatgacatgtccataagttgttttcggcttatttcgataagctttccgagacagcttatgaaaacagtttatagctta 339  Q
    ||||||||||||||||||| |||||||  |||||||| || |||| |||   | | ||||||||||||| ||||||||||    
T  12361266 cttatgacatgtccataagctgttttcaacttatttccattagctctcctgaataacttatgaaaacagcttatagctta 12361187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 260 - 339
Target Start/End: Complemental strand, 12851250 - 12851171
Alignment:
Q  260 cttatgacatgtccataagttgttttcggcttatttcgataagctttccgagacagcttatgaaaacagtttatagctta 339  Q
    ||||| |||||| |||||| ||||||||||||||||  ||||||| ||   || |||||||||||||| ||| |||||||    
T  12851250 cttataacatgttcataagatgttttcggcttattttcataagctctcaaggaaagcttatgaaaacaatttctagctta 12851171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 260 - 331
Target Start/End: Complemental strand, 20672824 - 20672753
Alignment:
Q  260 cttatgacatgtccataagttgttttcggcttatttcgataagctttccgagacagcttatgaaaacagttt 331  Q
    |||||||||||| |||||| ||||||| ||||||||  ||||||| |||  || ||||||| ||||||||||    
T  20672824 cttatgacatgttcataagctgttttcagcttattttcataagctctccaggatagcttataaaaacagttt 20672753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 280 - 339
Target Start/End: Original strand, 38036128 - 38036187
Alignment:
Q  280 tgttttcggcttatttcgataagctttccgagacagcttatgaaaacagtttatagctta 339  Q
    ||||||| ||||||||| ||||||| ||| ||| |||| || ||||||||||||||||||    
T  38036128 tgttttcagcttatttcaataagctctccaagatagctaatcaaaacagtttatagctta 38036187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 247 - 338
Target Start/End: Original strand, 39551192 - 39551283
Alignment:
Q  247 tttatggacataacttatgacatgtccataagttgttttcggcttatttcgataagctttccgagacagcttatgaaaacagtttatagctt 338  Q
    |||||||| | ||||||||||||||||| ||| ||||||   |||||||  ||||||| |||  || ||||||||||||||  |||||||||    
T  39551192 tttatggaaacaacttatgacatgtccaaaagctgtttttaacttatttttataagctctccaggaaagcttatgaaaacaacttatagctt 39551283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 266 - 325
Target Start/End: Original strand, 42215084 - 42215143
Alignment:
Q  266 acatgtccataagttgttttcggcttatttcgataagctttccgagacagcttatgaaaa 325  Q
    |||||| |||||||||||||| ||||||||  ||||||| ||| ||| ||||||||||||    
T  42215084 acatgttcataagttgttttcagcttatttacataagctctccaagatagcttatgaaaa 42215143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 262 - 304
Target Start/End: Complemental strand, 6950394 - 6950352
Alignment:
Q  262 tatgacatgtccataagttgttttcggcttatttcgataagct 304  Q
    ||||||||||| ||||||||||||| ||||||||| |||||||    
T  6950394 tatgacatgtcgataagttgttttcagcttatttccataagct 6950352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 260 - 334
Target Start/End: Original strand, 30277241 - 30277315
Alignment:
Q  260 cttatgacatgtccataagttgttttcggcttatttcgataagctttccgagacagcttatgaaaacagtttata 334  Q
    |||| |||||| ||||||||||||||| ||||||||| |||| || ||   || ||||||||||||||| |||||    
T  30277241 cttaggacatggccataagttgttttcagcttatttccataaactctctaggatagcttatgaaaacagcttata 30277315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 256 - 285
Target Start/End: Complemental strand, 9572948 - 9572919
Alignment:
Q  256 ataacttatgacatgtccataagttgtttt 285  Q
    ||||||||||||||||||||||||||||||    
T  9572948 ataacttatgacatgtccataagttgtttt 9572919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 258 - 327
Target Start/End: Complemental strand, 33553316 - 33553247
Alignment:
Q  258 aacttatgacatgtccataagttgttttcggcttatttcgataagctttccgagacagcttatgaaaaca 327  Q
    |||||||||||||||| |||| ||||  | ||||||||| ||||||| | | ||| ||||||||||||||    
T  33553316 aacttatgacatgtccctaagctgttcccagcttatttccataagctcttcaagatagcttatgaaaaca 33553247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 396 - 429
Target Start/End: Original strand, 37776842 - 37776875
Alignment:
Q  396 taagcacttaattaagttgtttatctaaacaatg 429  Q
    ||||| ||||||||||||||||||||||||||||    
T  37776842 taagctcttaattaagttgtttatctaaacaatg 37776875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 132; Significance: 4e-68; HSPs: 38)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 132; E-Value: 4e-68
Query Start/End: Original strand, 93 - 285
Target Start/End: Complemental strand, 18906641 - 18906453
Alignment:
Q  93 gtgtggttacaacaggttcctcatgttaatcgcactgattatcagctcattgatatctcagaggatggatttgtaagattattcacaacttcccttctga 192  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||  |||    
T  18906641 gtgtggttacaacaggttcctcatgttaatcgcactgattatcagctcattgatatctcagaggatggatttgtaagattactcacaacttacctcttga 18906542  T
Q  193 tttcttatttttcgattaacttagtataatcacatgcgaagctgttaaaaagagtttatggacataacttatgacatgtccataagttgtttt 285  Q
    ||||||||||||||||||||||| |||| ||    | ||  |||||||||| |||||||||||||||||||||||||||||||||||| ||||    
T  18906541 tttcttatttttcgattaacttattatagtc----gtgagactgttaaaaatagtttatggacataacttatgacatgtccataagttttttt 18906453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 98; E-Value: 7e-48
Query Start/End: Original strand, 269 - 426
Target Start/End: Complemental strand, 18906407 - 18906255
Alignment:
Q  269 tgtccataagttgttttcggcttatttcgataagctttccgagacagcttatgaaaacagtttatagcttagcttctaataaattgactttatattatct 368  Q
    |||||||||||||||||| ||||||||||||||||||| | ||| |||||||||||||||||||||||||     |||||||||||||||||||||||||    
T  18906407 tgtccataagttgttttcagcttatttcgataagcttttcaagatagcttatgaaaacagtttatagctt-----ctaataaattgactttatattatct 18906313  T
Q  369 cttgtcacagaaatagtttatagaaactaagcacttaattaagttgtttatctaaaca 426  Q
    ||||||||| |||||||||||| ||||||| ||||| |||||| |||||||| |||||    
T  18906312 cttgtcacaaaaatagtttatacaaactaaacacttcattaaggtgtttatccaaaca 18906255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 260 - 339
Target Start/End: Original strand, 32408588 - 32408667
Alignment:
Q  260 cttatgacatgtccataagttgttttcggcttatttcgataagctttccgagacagcttatgaaaacagtttatagctta 339  Q
    |||||||||||||| ||||||| |||| ||||||||| ||||||| | |  || |||||||||||| |||||||||||||    
T  32408588 cttatgacatgtccgtaagttggtttctgcttatttccataagctcttcaggatagcttatgaaaatagtttatagctta 32408667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 248 - 306
Target Start/End: Complemental strand, 35963327 - 35963269
Alignment:
Q  248 ttatggacataacttatgacatgtccataagttgttttcggcttatttcgataagcttt 306  Q
    ||||||| ||| | ||||||||||||||||||||||||| ||||||||| |||||||||    
T  35963327 ttatggaaatagcgtatgacatgtccataagttgttttcagcttatttccataagcttt 35963269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 266 - 339
Target Start/End: Original strand, 8651355 - 8651427
Alignment:
Q  266 acatgtccataagttgttttcggcttatttcgataagctttccgagacagcttatgaaaacagtttatagctta 339  Q
    ||||||||||||||||||||| || |||||| |||||||  | || | ||||||||||||||||||||||||||    
T  8651355 acatgtccataagttgttttcagcatatttccataagctcccaga-atagcttatgaaaacagtttatagctta 8651427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 243 - 327
Target Start/End: Original strand, 12242689 - 12242773
Alignment:
Q  243 agagtttatggacataacttatgacatgtccataagttgttttcggcttatttcgataagctttccgagacagcttatgaaaaca 327  Q
    |||| ||||||| | |||||||||||||  ||| |||||||||| ||||| ||| ||||||| ||| ||| ||||||||||||||    
T  12242689 agagcttatggaaaaaacttatgacatgaacattagttgttttcagcttacttccataagctctccaagatagcttatgaaaaca 12242773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 260 - 327
Target Start/End: Original strand, 18543193 - 18543259
Alignment:
Q  260 cttatgacatgtccataagttgttttcggcttatttcgataagctttccgagacagcttatgaaaaca 327  Q
    |||||||||||||||| |||||||||| ||||||||| ||||||| |||  || ||||||||||||||    
T  18543193 cttatgacatgtccatgagttgttttcagcttatttc-ataagctctccaggatagcttatgaaaaca 18543259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 260 - 334
Target Start/End: Complemental strand, 36639596 - 36639522
Alignment:
Q  260 cttatgacatgtccataagttgttttcggcttatttcgataagctttccgagacagcttatgaaaacagtttata 334  Q
    |||||||| ||||||||||||||||||  |||||||  ||||||| | | ||| |||||||||||||||| ||||    
T  36639596 cttatgacgtgtccataagttgttttcctcttattttcataagctcttcaagatagcttatgaaaacagtctata 36639522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 269 - 334
Target Start/End: Original strand, 7319013 - 7319078
Alignment:
Q  269 tgtccataagttgttttcggcttatttcgataagctttccgagacagcttatgaaaacagtttata 334  Q
    ||||||||||||||| || ||||||||  ||||| | ||| ||| |||||||||||||||||||||    
T  7319013 tgtccataagttgttctcagcttattttcataagttctccaagatagcttatgaaaacagtttata 7319078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 258 - 339
Target Start/End: Original strand, 10272425 - 10272506
Alignment:
Q  258 aacttatgacatgtccataagttgttttcggcttatttcgataagctttccgagacagcttatgaaaacagtttatagctta 339  Q
    |||||||||||||||  |||||||||||| ||||||||  |||| || ||| |||  |||||||||||||  ||||||||||    
T  10272425 aacttatgacatgtctgtaagttgttttcagcttattttcataaactctccaagatggcttatgaaaacaacttatagctta 10272506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 243 - 304
Target Start/End: Original strand, 28586745 - 28586806
Alignment:
Q  243 agagtttatggacataacttatgacatgtccataagttgttttcggcttatttcgataagct 304  Q
    |||| ||||||| ||| |||||||||| ||| |||| ||||||| |||||||||||||||||    
T  28586745 agagcttatggaaatagcttatgacatatccgtaagctgttttcagcttatttcgataagct 28586806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 248 - 301
Target Start/End: Original strand, 29590613 - 29590666
Alignment:
Q  248 ttatggacataacttatgacatgtccataagttgttttcggcttatttcgataa 301  Q
    ||||||||| |||||||||| ||||||||||||||||||  |||||||| ||||    
T  29590613 ttatggacaaaacttatgacttgtccataagttgttttcaacttatttccataa 29590666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 258 - 339
Target Start/End: Original strand, 32194073 - 32194154
Alignment:
Q  258 aacttatgacatgtccataagttgttttcggcttatttcgataagctttccgagacagcttatgaaaacagtttatagctta 339  Q
    |||||||||||| |||||||||||||||| ||||||||  ||||||| ||  ||| ||||||  ||||||  ||||||||||    
T  32194073 aacttatgacatttccataagttgttttcagcttatttatataagctctcaaagatagcttaaaaaaacatcttatagctta 32194154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 264 - 337
Target Start/End: Complemental strand, 34690943 - 34690870
Alignment:
Q  264 tgacatgtccataagttgttttcggcttatttcgataagctttccgagacagcttatgaaaacagtttatagct 337  Q
    |||||||||||||||||||| ||| |||||||| ||||||| ||| |||  |||||||| ||||  ||||||||    
T  34690943 tgacatgtccataagttgttatcgacttatttccataagctctccaagatggcttatgagaacaacttatagct 34690870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 258 - 327
Target Start/End: Original strand, 37611209 - 37611278
Alignment:
Q  258 aacttatgacatgtccataagttgttttcggcttatttcgataagctttccgagacagcttatgaaaaca 327  Q
    ||||| |||||||| |||||| ||||||| | ||||||| ||||||| ||| ||| ||||||||||||||    
T  37611209 aacttgtgacatgttcataagctgttttcaggttatttccataagctctccaagatagcttatgaaaaca 37611278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 258 - 327
Target Start/End: Original strand, 37787939 - 37788008
Alignment:
Q  258 aacttatgacatgtccataagttgttttcggcttatttcgataagctttccgagacagcttatgaaaaca 327  Q
    ||||| |||||||| |||||| ||||||| | ||||||| ||||||| ||| ||| ||||||||||||||    
T  37787939 aacttgtgacatgttcataagctgttttcaggttatttccataagctctccaagatagcttatgaaaaca 37788008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 243 - 295
Target Start/End: Original strand, 11700357 - 11700409
Alignment:
Q  243 agagtttatggacataacttatgacatgtccataagttgttttcggcttattt 295  Q
    |||||||||||| | ||||||||||||||||||||| ||||||| | ||||||    
T  11700357 agagtttatggaaacaacttatgacatgtccataagctgttttcagattattt 11700409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 265 - 337
Target Start/End: Original strand, 15074750 - 15074822
Alignment:
Q  265 gacatgtccataagttgttttcggcttatttcgataagctttccgagacagcttatgaaaacagtttatagct 337  Q
    |||||||||||||| ||||||| ||||||||| |||||||||||   | | ||||||||||||  ||||||||    
T  15074750 gacatgtccataagctgttttcagcttatttccataagctttccagtataacttatgaaaacaacttatagct 15074822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 267 - 335
Target Start/End: Complemental strand, 30217149 - 30217081
Alignment:
Q  267 catgtccataagttgttttcggcttatttcgataagctttccgagacagcttatgaaaacagtttatag 335  Q
    ||||||||||||||||||| || ||||||| ||||||| |||  || ||||||||||| ||| ||||||    
T  30217149 catgtccataagttgttttaggtttatttccataagctctccaggatagcttatgaaagcagcttatag 30217081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 243 - 339
Target Start/End: Complemental strand, 32172744 - 32172648
Alignment:
Q  243 agagtttatggacataacttatgacatgtccataagttgttttcggcttatttcgataagctttccgagacagcttatgaaaacagtttatagctta 339  Q
    |||| ||||||| | |||||||||||||||||||||   ||||| ||||||||| || || | | |  || ||||||||||||||| ||||||||||    
T  32172744 agagcttatggaaacaacttatgacatgtccataagccattttcagcttatttccattagttcttcatgatagcttatgaaaacagcttatagctta 32172648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 261 - 337
Target Start/End: Original strand, 33533536 - 33533612
Alignment:
Q  261 ttatgacatgtccataagttgttttcggcttatttcgataagctttccgagacagcttatgaaaacagtttatagct 337  Q
    ||||||||| | ||||||||||||||  |||||||| ||||||| ||| ||| ||||| ||||||||  ||||||||    
T  33533536 ttatgacatattcataagttgttttcaacttatttccataagctctccaagatagcttgtgaaaacaccttatagct 33533612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 396 - 427
Target Start/End: Complemental strand, 6717067 - 6717036
Alignment:
Q  396 taagcacttaattaagttgtttatctaaacaa 427  Q
    ||||||||||||||||||||||||||||||||    
T  6717067 taagcacttaattaagttgtttatctaaacaa 6717036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 268 - 339
Target Start/End: Complemental strand, 9174881 - 9174811
Alignment:
Q  268 atgtccataagttgttttcggcttatttcgataagctttccgagacagcttatgaaaacagtttatagctta 339  Q
    |||||||||||||||||||  | | ||||||||||||  | || | ||||||||||||||||||||||||||    
T  9174881 atgtccataagttgttttcaacatttttcgataagctcccaga-atagcttatgaaaacagtttatagctta 9174811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 240 - 291
Target Start/End: Complemental strand, 18700478 - 18700427
Alignment:
Q  240 aaaagagtttatggacataacttatgacatgtccataagttgttttcggctt 291  Q
    ||||||| ||||||| | ||||||||||||||| ||||||||||||| ||||    
T  18700478 aaaagagcttatggaaacaacttatgacatgtctataagttgttttcagctt 18700427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 248 - 295
Target Start/End: Original strand, 38766529 - 38766576
Alignment:
Q  248 ttatggacataacttatgacatgtccataagttgttttcggcttattt 295  Q
    ||||||| | ||||||||||| |||||||||||||||||| |||||||    
T  38766529 ttatggaaacaacttatgacacgtccataagttgttttcgacttattt 38766576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 260 - 327
Target Start/End: Original strand, 40205070 - 40205137
Alignment:
Q  260 cttatgacatgtccataagttgttttcggcttatttcgataagctttccgagacagcttatgaaaaca 327  Q
    ||||| ||||||||||||  ||||||| ||||||||| ||||||| |||  || ||||||||||||||    
T  40205070 cttataacatgtccataatctgttttcagcttatttctataagctctccaggatagcttatgaaaaca 40205137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 260 - 339
Target Start/End: Original strand, 41957447 - 41957526
Alignment:
Q  260 cttatgacatgtccataagttgttttcggcttatttcgataagctttccgagacagcttatgaaaacagtttatagctta 339  Q
    |||||||||||||||||||||||||||  |||||||  ||||| | ||   || ||||||||||||||| ||||| ||||    
T  41957447 cttatgacatgtccataagttgttttcatcttattttcataagttctcaaggatagcttatgaaaacagcttataactta 41957526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 281 - 339
Target Start/End: Complemental strand, 6183497 - 6183439
Alignment:
Q  281 gttttcggcttatttcgataagctttccgagacagcttatgaaaacagtttatagctta 339  Q
    |||||| ||||||||| ||||||| ||| | |||||||||||| |||| ||||||||||    
T  6183497 gttttcagcttatttccataagctctccaaaacagcttatgaatacagcttatagctta 6183439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 269 - 339
Target Start/End: Complemental strand, 7319471 - 7319401
Alignment:
Q  269 tgtccataagttgttttcggcttatttcgataagctttccgagacagcttatgaaaacagtttatagctta 339  Q
    |||| |||||||| |||| ||||||||  ||||| | ||| ||| |||||| |||||||||||||||||||    
T  7319471 tgtctataagttgctttcagcttatttttataagttctccaagatagcttacgaaaacagtttatagctta 7319401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 269 - 339
Target Start/End: Complemental strand, 12975411 - 12975342
Alignment:
Q  269 tgtccataagttgttttcggcttatttcgataagctttccgagacagcttatgaaaacagtttatagctta 339  Q
    ||||||||||||||||||  |||| ||| ||||||| ||| ||| |||||||||| |||| ||||||||||    
T  12975411 tgtccataagttgttttcaactta-ttccataagctctccaagatagcttatgaacacagcttatagctta 12975342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 242 - 328
Target Start/End: Original strand, 35095764 - 35095850
Alignment:
Q  242 aagagtttatggacataacttatgacatgtccataagttgttttcggcttatttcgataagctttccgagacagcttatgaaaacag 328  Q
    ||||| ||||||| ||| |||||||||||| |||| |  ||||||  |||||||| ||||||||| | ||| |||| ||||||||||    
T  35095764 aagagcttatggaaatatcttatgacatgtacatatgccgttttcaacttatttccataagctttacaagatagctcatgaaaacag 35095850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 260 - 301
Target Start/End: Complemental strand, 1899228 - 1899187
Alignment:
Q  260 cttatgacatgtccataagttgttttcggcttatttcgataa 301  Q
    |||||||||||| |||||||||||||| ||||||||| ||||    
T  1899228 cttatgacatgtgcataagttgttttcagcttatttccataa 1899187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 243 - 296
Target Start/End: Complemental strand, 6109574 - 6109521
Alignment:
Q  243 agagtttatggacataacttatgacatgtccataagttgttttcggcttatttc 296  Q
    |||| ||||||| | || |||||| ||||||||||||||||||| |||||||||    
T  6109574 agagcttatggaaaaaaattatgatatgtccataagttgttttcagcttatttc 6109521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #34
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 263 - 308
Target Start/End: Complemental strand, 10303867 - 10303822
Alignment:
Q  263 atgacatgtccataagttgttttcggcttatttcgataagctttcc 308  Q
    ||||||||||||||||||||| || ||||||||  |||||||||||    
T  10303867 atgacatgtccataagttgttgtcagcttattttcataagctttcc 10303822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #35
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 261 - 334
Target Start/End: Complemental strand, 11707128 - 11707055
Alignment:
Q  261 ttatgacatgtccataagttgttttcggcttatttcgataagctttccgagacagcttatgaaaacagtttata 334  Q
    |||||||||||  ||||||||||||| ||||||||  | ||||| | | ||| ||||||||||||||| |||||    
T  11707128 ttatgacatgtttataagttgttttcagcttattttcaaaagctctacaagatagcttatgaaaacagcttata 11707055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #36
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 258 - 327
Target Start/End: Complemental strand, 17368752 - 17368683
Alignment:
Q  258 aacttatgacatgtccataagttgttttcggcttatttcgataagctttccgagacagcttatgaaaaca 327  Q
    |||||||||||||| |||| |  |||||| ||||||||| |||| || ||| ||| ||||||||||||||    
T  17368752 aacttatgacatgttcatatgcagttttcagcttatttccataacctctccaagatagcttatgaaaaca 17368683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #37
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 262 - 339
Target Start/End: Complemental strand, 34975436 - 34975359
Alignment:
Q  262 tatgacatgtccataagttgttttcggcttatttcgataagctttccgagacagcttatgaaaacagtttatagctta 339  Q
    |||||||| ||||||| | |||||| ||||||||| || |||| |||  || |||||| ||||||| |||||||||||    
T  34975436 tatgacatatccataaatcgttttcagcttatttccattagctctccaggatagcttacgaaaacaatttatagctta 34975359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #38
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 262 - 339
Target Start/End: Original strand, 37526197 - 37526274
Alignment:
Q  262 tatgacatgtccataagttgttttcggcttatttcgataagctttccgagacagcttatgaaaacagtttatagctta 339  Q
    ||||||||||  ||||| ||||||| ||||||||| ||||||| |||   ||| ||||||||||||  ||||||||||    
T  37526197 tatgacatgttaataagctgttttcagcttatttccataagctctccagaacaacttatgaaaacaacttatagctta 37526274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 51; Significance: 8e-20; HSPs: 33)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 243 - 333
Target Start/End: Complemental strand, 37273225 - 37273135
Alignment:
Q  243 agagtttatggacataacttatgacatgtccataagttgttttcggcttatttcgataagctttccgagacagcttatgaaaacagtttat 333  Q
    |||| ||||||| | |||||||||||||||||||||||||||||  |||||||| ||||| | ||| ||| ||||||||||||||||||||    
T  37273225 agagcttatggaaacaacttatgacatgtccataagttgttttcaacttatttccataagttctccaagatagcttatgaaaacagtttat 37273135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 242 - 304
Target Start/End: Complemental strand, 43115148 - 43115086
Alignment:
Q  242 aagagtttatggacataacttatgacatgtccataagttgttttcggcttatttcgataagct 304  Q
    ||||||||||||| | |||||||||||||||||||| |||||||| ||||||||| |||||||    
T  43115148 aagagtttatggaaacaacttatgacatgtccataacttgttttcagcttatttccataagct 43115086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 248 - 339
Target Start/End: Complemental strand, 41724298 - 41724206
Alignment:
Q  248 ttatggacataacttatgacatgtccataagttgttttcggcttatttcg-ataagctttccgagacagcttatgaaaacagtttatagctta 339  Q
    ||||||| | ||||||||||||||||||||||||||||| ||||||||   ||||||| ||   || |||| |||||||||||||||||||||    
T  41724298 ttatggaaacaacttatgacatgtccataagttgttttcagcttattttatataagctctcaaggatagctgatgaaaacagtttatagctta 41724206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 260 - 339
Target Start/End: Complemental strand, 23785329 - 23785250
Alignment:
Q  260 cttatgacatgtccataagttgttttcggcttatttcgataagctttccgagacagcttatgaaaacagtttatagctta 339  Q
    |||||| | |||||||||||||||||| |||| |||| ||||||| |||  || ||||| ||||||||||||||||||||    
T  23785329 cttatggcgtgtccataagttgttttcagcttgtttccataagctctccatgagagcttgtgaaaacagtttatagctta 23785250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 241 - 296
Target Start/End: Complemental strand, 37155094 - 37155039
Alignment:
Q  241 aaagagtttatggacataacttatgacatgtccataagttgttttcggcttatttc 296  Q
    |||||||||||||| ||||||||| |||||||||||||||||||||  ||||||||    
T  37155094 aaagagtttatggaaataacttattacatgtccataagttgttttctacttatttc 37155039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 241 - 296
Target Start/End: Complemental strand, 37200449 - 37200394
Alignment:
Q  241 aaagagtttatggacataacttatgacatgtccataagttgttttcggcttatttc 296  Q
    |||||||||||||| ||||||||| |||||||||||||||||||||  ||||||||    
T  37200449 aaagagtttatggaaataacttattacatgtccataagttgttttctacttatttc 37200394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 261 - 336
Target Start/End: Complemental strand, 38462354 - 38462279
Alignment:
Q  261 ttatgacatgtccataagttgttttcggcttatttcgataagctttccgagacagcttatgaaaacagtttatagc 336  Q
    ||||||| || ||||||||||||||| ||||||||| ||||||| ||   || |||||||||||||||||||||||    
T  38462354 ttatgacttgaccataagttgttttcagcttatttccataagctatcttggatagcttatgaaaacagtttatagc 38462279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 269 - 339
Target Start/End: Complemental strand, 2719533 - 2719463
Alignment:
Q  269 tgtccataagttgttttcggcttatttcgataagctttccgagacagcttatgaaaacagtttatagctta 339  Q
    ||||||||||||||| || ||||||||  ||||| | ||| ||| ||||||||||||||||||||||||||    
T  2719533 tgtccataagttgttctcagcttattttcataagttctccaagatagcttatgaaaacagtttatagctta 2719463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 244 - 284
Target Start/End: Original strand, 14598533 - 14598573
Alignment:
Q  244 gagtttatggacataacttatgacatgtccataagttgttt 284  Q
    ||||||||||| |||||||||||||||||||||||||||||    
T  14598533 gagtttatggaaataacttatgacatgtccataagttgttt 14598573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 262 - 334
Target Start/End: Complemental strand, 20669244 - 20669172
Alignment:
Q  262 tatgacatgtccataagttgttttcggcttatttcgataagctttccgagacagcttatgaaaacagtttata 334  Q
    |||||||||| |||||| ||||||| ||||||||  ||||||| ||| ||| ||||||||||||||| |||||    
T  20669244 tatgacatgttcataagctgttttccgcttatttacataagctctccaagatagcttatgaaaacagcttata 20669172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 261 - 339
Target Start/End: Original strand, 13709820 - 13709898
Alignment:
Q  261 ttatgacatgtccataagttgttttcggcttatttcgataagctttccgagacagcttatgaaaacagtttatagctta 339  Q
    |||||||| ||||||||||||||||| | ||||||| |||| || |||  || ||||||||||||||| ||||| ||||    
T  13709820 ttatgacaagtccataagttgttttcagtttatttcaataaactctccaggatagcttatgaaaacagattatacctta 13709898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 274 - 324
Target Start/End: Complemental strand, 23793644 - 23793594
Alignment:
Q  274 ataagttgttttcggcttatttcgataagctttccgagacagcttatgaaa 324  Q
    ||||||||||||| ||||||||| ||||||||||| ||| |||||||||||    
T  23793644 ataagttgttttcagcttatttctataagctttccaagatagcttatgaaa 23793594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 258 - 296
Target Start/End: Complemental strand, 36200172 - 36200134
Alignment:
Q  258 aacttatgacatgtccataagttgttttcggcttatttc 296  Q
    ||||||||||||||||||||||||||||| |||||||||    
T  36200172 aacttatgacatgtccataagttgttttcagcttatttc 36200134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 259 - 325
Target Start/End: Original strand, 53848058 - 53848124
Alignment:
Q  259 acttatgacatgtccataagttgttttcggcttatttcgataagctttccgagacagcttatgaaaa 325  Q
    |||| ||||||||||||||| ||||||||||||||||| ||||||| || | || || |||||||||    
T  53848058 acttgtgacatgtccataagctgttttcggcttatttctataagctctctgggatagtttatgaaaa 53848124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 262 - 295
Target Start/End: Original strand, 11040612 - 11040645
Alignment:
Q  262 tatgacatgtccataagttgttttcggcttattt 295  Q
    ||||||||||||||||||||||||||||||||||    
T  11040612 tatgacatgtccataagttgttttcggcttattt 11040645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 258 - 339
Target Start/End: Original strand, 33725868 - 33725949
Alignment:
Q  258 aacttatgacatgtccataagttgttttcggcttatttcgataagctttccgagacagcttatgaaaacagtttatagctta 339  Q
    ||||||||||||||  ||| | |||||||  |||||||| |||||||||||  || || |||| ||||||||||||||||||    
T  33725868 aacttatgacatgttgatatgctgttttcatcttatttctataagctttccaggatagtttataaaaacagtttatagctta 33725949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 260 - 325
Target Start/End: Original strand, 54837030 - 54837095
Alignment:
Q  260 cttatgacatgtccataagttgttttcggcttatttcgataagctttccgagacagcttatgaaaa 325  Q
    |||||||||||| ||||| |||||||| ||||||||  ||||||| ||| ||| ||||||||||||    
T  54837030 cttatgacatgttcataacttgttttccgcttatttttataagctgtccaagatagcttatgaaaa 54837095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 258 - 302
Target Start/End: Complemental strand, 1810053 - 1810009
Alignment:
Q  258 aacttatgacatgtccataagttgttttcggcttatttcgataag 302  Q
    |||||||||||||||||| |||||||||| ||||||||| |||||    
T  1810053 aacttatgacatgtccatgagttgttttctgcttatttctataag 1810009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 266 - 322
Target Start/End: Original strand, 21862177 - 21862233
Alignment:
Q  266 acatgtccataagttgttttcggcttatttcgataagctttccgagacagcttatga 322  Q
    ||||||||||||||||||||| ||||||||| ||||||| ||| ||| |||| ||||    
T  21862177 acatgtccataagttgttttcagcttatttccataagctctcccagatagctaatga 21862233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 260 - 304
Target Start/End: Complemental strand, 37825196 - 37825152
Alignment:
Q  260 cttatgacatgtccataagttgttttcggcttatttcgataagct 304  Q
    ||||||||||||||||||||||||||| | ||||||| |||||||    
T  37825196 cttatgacatgtccataagttgttttcaggttatttccataagct 37825152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 258 - 306
Target Start/End: Complemental strand, 42745114 - 42745066
Alignment:
Q  258 aacttatgacatgtccataagttgttttcggcttatttcgataagcttt 306  Q
    |||||||||||||| ||||||||||||||  |||||||| |||||||||    
T  42745114 aacttatgacatgttcataagttgttttcatcttatttccataagcttt 42745066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 260 - 328
Target Start/End: Original strand, 54180776 - 54180844
Alignment:
Q  260 cttatgacatgtccataagttgttttcggcttatttcgataagctttccgagacagcttatgaaaacag 328  Q
    ||||||||||||||||||||||||||  ||||||||  ||||||| |||   | |||||||||||||||    
T  54180776 cttatgacatgtccataagttgtttttagcttatttatataagctctccataatagcttatgaaaacag 54180844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 261 - 304
Target Start/End: Original strand, 11039336 - 11039379
Alignment:
Q  261 ttatgacatgtccataagttgttttcggcttatttcgataagct 304  Q
    |||||||||||||||||||||||||| |||||| || |||||||    
T  11039336 ttatgacatgtccataagttgttttcagcttatctccataagct 11039379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 260 - 295
Target Start/End: Original strand, 12923321 - 12923356
Alignment:
Q  260 cttatgacatgtccataagttgttttcggcttattt 295  Q
    ||||||||||||||||||||||||||| ||||||||    
T  12923321 cttatgacatgtccataagttgttttcagcttattt 12923356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 258 - 305
Target Start/End: Complemental strand, 29771914 - 29771867
Alignment:
Q  258 aacttatgacatgtccataagttgttttcggcttatttcgataagctt 305  Q
    |||||| ||||||||||||||||||||||  |||||||| ||||||||    
T  29771914 aacttaggacatgtccataagttgttttcaacttatttccataagctt 29771867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 261 - 304
Target Start/End: Original strand, 45432936 - 45432979
Alignment:
Q  261 ttatgacatgtccataagttgttttcggcttatttcgataagct 304  Q
    ||||||||||| |||||||||||||| ||||||||| |||||||    
T  45432936 ttatgacatgttcataagttgttttcagcttatttccataagct 45432979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 258 - 304
Target Start/End: Complemental strand, 31010478 - 31010432
Alignment:
Q  258 aacttatgacatgtccataagttgttttcggcttatttcgataagct 304  Q
    ||||||||||||||||||||| ||||||| ||||| ||| |||||||    
T  31010478 aacttatgacatgtccataagctgttttcagcttaattccataagct 31010432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 280 - 334
Target Start/End: Complemental strand, 42809026 - 42808972
Alignment:
Q  280 tgttttcggcttatttcgataagctttccgagacagcttatgaaaacagtttata 334  Q
    ||||||| |||||||| || ||||| ||||||| ||||||||||||||| |||||    
T  42809026 tgttttcagcttattttgacaagctctccgagagagcttatgaaaacagcttata 42808972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 243 - 325
Target Start/End: Complemental strand, 43397918 - 43397836
Alignment:
Q  243 agagtttatggacataacttatgacatgtccataagttgttttcggcttatttcgataagctttccgagacagcttatgaaaa 325  Q
    ||||||||| || ||| ||||| |||||||||||| ||||||||  |||| ||| ||||||| |||| || | ||||||||||    
T  43397918 agagtttatagaaatagcttataacatgtccataaattgttttcaacttacttccataagctctccgcgataacttatgaaaa 43397836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 243 - 320
Target Start/End: Original strand, 2081062 - 2081139
Alignment:
Q  243 agagtttatggacataacttatgacatgtccataagttgttttcggcttatttcgataagctttccgagacagcttat 320  Q
    |||| ||||||| ||| || ||||||  ||| |||||||||||| ||||||||| || |||| ||||||| |||||||    
T  2081062 agagcttatggaaatagctaatgacacatccttaagttgttttcagcttatttccattagctctccgagatagcttat 2081139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 314 - 383
Target Start/End: Original strand, 24235733 - 24235802
Alignment:
Q  314 agcttatgaaaacagtttatagcttagcttctaataaattgactttatattatctcttgtcacagaaata 383  Q
    ||||||||||||||  ||||||||||  ||| ||||  ||||||||||||||||| |||| | |||||||    
T  24235733 agcttatgaaaacaacttatagcttatattcaaatagtttgactttatattatcttttgttatagaaata 24235802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 298 - 339
Target Start/End: Complemental strand, 25964479 - 25964438
Alignment:
Q  298 ataagctttccgagacagcttatgaaaacagtttatagctta 339  Q
    |||||||||||| || ||||||||||||||| ||||||||||    
T  25964479 ataagctttccgggatagcttatgaaaacagcttatagctta 25964438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 258 - 327
Target Start/End: Original strand, 48048976 - 48049045
Alignment:
Q  258 aacttatgacatgtccataagttgttttcggcttatttcgataagctttccgagacagcttatgaaaaca 327  Q
    |||| |||||||||||||||| ||||||| ||||||||| |||| ||  || ||| |||| |||||||||    
T  48048976 aactcatgacatgtccataagctgttttcagcttatttccataacctccccaagatagctaatgaaaaca 48049045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 49; Significance: 1e-18; HSPs: 25)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 243 - 339
Target Start/End: Original strand, 33645940 - 33646035
Alignment:
Q  243 agagtttatggacataacttatgacatgtccataagttgttttcggcttatttcgataagctttccgagacagcttatgaaaacagtttatagctta 339  Q
    |||| ||||||| | ||||||||||||||| ||||||||||||  | ||||||| ||||||| ||| ||| ||||||||||||||||||||||||||    
T  33645940 agagcttatggaaacaacttatgacatgtctataagttgtttttaggttatttccataagctctcc-agatagcttatgaaaacagtttatagctta 33646035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 245 - 305
Target Start/End: Original strand, 39568305 - 39568365
Alignment:
Q  245 agtttatggacataacttatgacatgtccataagttgttttcggcttatttcgataagctt 305  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||  |||||||    
T  39568305 agtttatggaaataacttatgacatgtccataagttgttttcggcttatttctgtaagctt 39568365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 241 - 339
Target Start/End: Original strand, 39551525 - 39551623
Alignment:
Q  241 aaagagtttatggacataacttatgacatgtccataagttgttttcggcttatttcgataagctttccgagacagcttatgaaaacagtttatagctta 339  Q
    |||||| ||||||| | ||||||||||||||||||||| |||| || ||||||||| ||||||||||| ||| |  ||||||||| || ||||||||||    
T  39551525 aaagaggttatggaaacaacttatgacatgtccataaggtgttgtcagcttatttccataagctttcctagagaagttatgaaaatagattatagctta 39551623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 261 - 339
Target Start/End: Original strand, 44151477 - 44151555
Alignment:
Q  261 ttatgacatgtccataagttgttttcggcttatttcgataagctttccgagacagcttatgaaaacagtttatagctta 339  Q
    |||||||||||||||||| ||||||| ||||||||| ||||||||| | ||| || |||||||||||  ||||||||||    
T  44151477 ttatgacatgtccataagatgttttcagcttatttccataagcttttcaagatagtttatgaaaacaacttatagctta 44151555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 241 - 295
Target Start/End: Complemental strand, 21248019 - 21247965
Alignment:
Q  241 aaagagtttatggacataacttatgacatgtccataagttgttttcggcttattt 295  Q
    |||||||||||||| |||||||||||||||| |||||||||||||  ||||||||    
T  21248019 aaagagtttatggaaataacttatgacatgttcataagttgttttaagcttattt 21247965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 243 - 304
Target Start/End: Complemental strand, 39360114 - 39360053
Alignment:
Q  243 agagtttatggacataacttatgacatgtccataagttgttttcggcttatttcgataagct 304  Q
    |||||||||||| | |||||||||||| ||||||||||| |||| ||||||||| |||||||    
T  39360114 agagtttatggaaacaacttatgacatatccataagttgctttcagcttatttcaataagct 39360053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 264 - 327
Target Start/End: Original strand, 24363601 - 24363664
Alignment:
Q  264 tgacatgtccataagttgttttcggcttatttcgataagctttccgagacagcttatgaaaaca 327  Q
    ||||||||||||||||||||||| ||||||||| |||| || |||  || ||||||||||||||    
T  24363601 tgacatgtccataagttgttttcagcttatttccataacctctccaggatagcttatgaaaaca 24363664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 243 - 334
Target Start/End: Complemental strand, 39334284 - 39334193
Alignment:
Q  243 agagtttatggacataacttatgacatgtccataagttgttttcggcttatttcgataagctttccgagacagcttatgaaaacagtttata 334  Q
    |||||||||||| | || |||||||||||||||||||||  ||| ||||||||| |||||||  ||  || ||||| ||||||||| |||||    
T  39334284 agagtttatggaaacaatttatgacatgtccataagttgcattcagcttatttccataagctcgccaggatagcttttgaaaacagcttata 39334193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 256 - 331
Target Start/End: Complemental strand, 45078356 - 45078281
Alignment:
Q  256 ataacttatgacatgtccataagttgttttcggcttatttcgataagctttccgagacagcttatgaaaacagttt 331  Q
    ||||||||||||||||||||||| |||||||  |||||||| | ||| | |||| || |||||||||||| |||||    
T  45078356 ataacttatgacatgtccataagctgttttcaacttatttccacaagttatccgtgatagcttatgaaaaaagttt 45078281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 261 - 331
Target Start/End: Complemental strand, 7244753 - 7244683
Alignment:
Q  261 ttatgacatgtccataagttgttttcggcttatttcgataagctttccgagacagcttatgaaaacagttt 331  Q
    ||||||||||  |||||||||||||| ||||||||  ||||||| ||| | | ||||||||||||||||||    
T  7244753 ttatgacatgctcataagttgttttcagcttattttcataagctctccaatatagcttatgaaaacagttt 7244683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 246 - 328
Target Start/End: Original strand, 9423576 - 9423658
Alignment:
Q  246 gtttatggacataacttatgacatgtccataagttgttttcggcttatttcgataagctttccgagacagcttatgaaaacag 328  Q
    ||||||||| | || ||||||||||| |||||||||||||| ||||||||| | ||||| |||  || ||||||| |||||||    
T  9423576 gtttatggaaacaatttatgacatgttcataagttgttttcagcttatttcaagaagctctccaggatagcttattaaaacag 9423658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 260 - 334
Target Start/End: Original strand, 18749813 - 18749887
Alignment:
Q  260 cttatgacatgtccataagttgttttcggcttatttcgataagctttccgagacagcttatgaaaacagtttata 334  Q
    |||| ||||||| ||||||  |||||| ||||||||| ||||| |||||| || ||||||||||||||| |||||    
T  18749813 cttacgacatgttcataagcagttttcagcttatttccataagttttccgtgatagcttatgaaaacagcttata 18749887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 262 - 308
Target Start/End: Complemental strand, 33894699 - 33894653
Alignment:
Q  262 tatgacatgtccataagttgttttcggcttatttcgataagctttcc 308  Q
    ||||||||||||||||||||||||| ||||||||| |||| ||||||    
T  33894699 tatgacatgtccataagttgttttcagcttatttcaataaactttcc 33894653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 242 - 304
Target Start/End: Original strand, 39539759 - 39539821
Alignment:
Q  242 aagagtttatggacataacttatgacatgtccataagttgttttcggcttatttcgataagct 304  Q
    ||||||||| ||| | ||||||||||||||||||||| ||||||| |||||||| || |||||    
T  39539759 aagagtttacggaaacaacttatgacatgtccataagctgttttcagcttattttgacaagct 39539821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 258 - 307
Target Start/End: Original strand, 47134751 - 47134800
Alignment:
Q  258 aacttatgacatgtccataagttgttttcggcttatttcgataagctttc 307  Q
    ||||||||||| ||||||||||||||||| ||||||||  ||||||||||    
T  47134751 aacttatgacacgtccataagttgttttcagcttattttcataagctttc 47134800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 258 - 302
Target Start/End: Complemental strand, 28844566 - 28844522
Alignment:
Q  258 aacttatgacatgtccataagttgttttcggcttatttcgataag 302  Q
    |||||||||||||||||| |||||||||| | |||||||||||||    
T  28844566 aacttatgacatgtccatcagttgttttcagtttatttcgataag 28844522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 260 - 328
Target Start/End: Original strand, 42281510 - 42281578
Alignment:
Q  260 cttatgacatgtccataagttgttttcggcttatttcgataagctttccgagacagcttatgaaaacag 328  Q
    ||||||||||||  |||| |||||||| ||||||||| ||||||| || | || |||||||||||||||    
T  42281510 cttatgacatgtaaataatttgttttcagcttatttctataagctctcagtgatagcttatgaaaacag 42281578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 263 - 339
Target Start/End: Original strand, 46056009 - 46056085
Alignment:
Q  263 atgacatgtccataagttgttttcggcttatttcgataagctttccgagacagcttatgaaaacagtttatagctta 339  Q
    |||| ||||||||||  ||||||  ||||||||| ||||||| | || || |||||||||||||| |||||||||||    
T  46056009 atgatatgtccataatatgtttttagcttatttccataagctctacgggatagcttatgaaaacaatttatagctta 46056085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 259 - 334
Target Start/End: Complemental strand, 4966231 - 4966156
Alignment:
Q  259 acttatgacatgtccataagttgttttcggcttatttcgataagctttccgagacagcttatgaaaacagtttata 334  Q
    |||||||| ||||||||||||||||||| | ||||||| ||||||| | |  ||  |||||||||||||| |||||    
T  4966231 acttatgatatgtccataagttgttttcagtttatttccataagctcttcaggatggcttatgaaaacagcttata 4966156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 243 - 305
Target Start/End: Original strand, 3500946 - 3501008
Alignment:
Q  243 agagtttatggacataacttatgacatgtccataagttgttttcggcttatttcgataagctt 305  Q
    |||| ||||||| |||||||||||||||| ||| || ||||||| ||||||||| ||| ||||    
T  3500946 agagcttatggaaataacttatgacatgtacatcagctgttttcagcttatttccatacgctt 3501008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 258 - 304
Target Start/End: Original strand, 12234883 - 12234929
Alignment:
Q  258 aacttatgacatgtccataagttgttttcggcttatttcgataagct 304  Q
    ||||||||||||||| ||||| ||||||| ||||||||| |||||||    
T  12234883 aacttatgacatgtctataagctgttttcagcttatttccataagct 12234929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 258 - 304
Target Start/End: Complemental strand, 46082112 - 46082066
Alignment:
Q  258 aacttatgacatgtccataagttgttttcggcttatttcgataagct 304  Q
    ||||||||||||| ||||||||||||||| ||||||||  |||||||    
T  46082112 aacttatgacatgaccataagttgttttcagcttattttcataagct 46082066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 243 - 296
Target Start/End: Complemental strand, 29287318 - 29287265
Alignment:
Q  243 agagtttatggacataacttatgacatgtccataagttgttttcggcttatttc 296  Q
    |||| ||||| | ||| |||||||||||||||||| ||||||| ||||||||||    
T  29287318 agagcttatgaaaatagcttatgacatgtccataaattgtttttggcttatttc 29287265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 261 - 302
Target Start/End: Complemental strand, 39345544 - 39345503
Alignment:
Q  261 ttatgacatgtccataagttgttttcggcttatttcgataag 302  Q
    ||||||||||||||||||||| |||| ||||||||| |||||    
T  39345544 ttatgacatgtccataagttgctttcagcttatttccataag 39345503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 258 - 339
Target Start/End: Original strand, 48157114 - 48157195
Alignment:
Q  258 aacttatgacatgtccataagttgttttcggcttatttcgataagctttccgagacagcttatgaaaacagtttatagctta 339  Q
    |||||||| |||||||||||| ||||||| ||||||||| ||||| | |||   | ||||| ||||||||  ||||||||||    
T  48157114 aacttatgccatgtccataagctgttttcagcttatttccataagatctcccgaatagcttgtgaaaacaaattatagctta 48157195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 47; Significance: 2e-17; HSPs: 20)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 244 - 334
Target Start/End: Original strand, 53673638 - 53673728
Alignment:
Q  244 gagtttatggacataacttatgacatgtccataagttgttttcggcttatttcgataagctttccgagacagcttatgaaaacagtttata 334  Q
    ||||||||||| | ||| ||| | ||||||||||||||||||| ||||||||  ||||||| ||| ||| |||||||||||||||||||||    
T  53673638 gagtttatggaaacaacatatcatatgtccataagttgttttcagcttatttacataagctctccaagatagcttatgaaaacagtttata 53673728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 105 - 169
Target Start/End: Complemental strand, 54580626 - 54580562
Alignment:
Q  105 caggttcctcatgttaatcgcactgattatcagctcattgatatctcagaggatggatttgtaag 169  Q
    |||||||||||||| ||||| |||||||||||| | ||||||||||| || ||||||||||||||    
T  54580626 caggttcctcatgtgaatcgtactgattatcagttgattgatatctctgaagatggatttgtaag 54580562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 260 - 327
Target Start/End: Complemental strand, 23819163 - 23819096
Alignment:
Q  260 cttatgacatgtccataagttgttttcggcttatttcgataagctttccgagacagcttatgaaaaca 327  Q
    |||||||||||||||||||||||||||  |||||||| ||||||| | | ||| ||||||||||||||    
T  23819163 cttatgacatgtccataagttgttttcatcttatttctataagctcttcaagatagcttatgaaaaca 23819096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 106 - 169
Target Start/End: Complemental strand, 45277617 - 45277554
Alignment:
Q  106 aggttcctcatgttaatcgcactgattatcagctcattgatatctcagaggatggatttgtaag 169  Q
    |||||||||| || ||||| |||||||| ||||||||||||||||| || ||||||||||||||    
T  45277617 aggttcctcacgtgaatcgtactgattaccagctcattgatatctctgaagatggatttgtaag 45277554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 261 - 335
Target Start/End: Original strand, 34398682 - 34398756
Alignment:
Q  261 ttatgacatgtccataagttgttttcggcttatttcgataagctttccgagacagcttatgaaaacagtttatag 335  Q
    |||||||||| ||||||||||||||||||||| ||| ||||||| |||  ||  |||||||||||||| ||||||    
T  34398682 ttatgacatgcccataagttgttttcggcttacttccataagctctccatgatggcttatgaaaacagcttatag 34398756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 254 - 331
Target Start/End: Original strand, 55547034 - 55547111
Alignment:
Q  254 acataacttatgacatgtccataagttgttttcggcttatttcgataagctttccgagacagcttatgaaaacagttt 331  Q
    ||||||||||||||||||| ||||||||||||  ||||||||| |||| |||| |   | ||||||||||||||||||    
T  55547034 acataacttatgacatgtctataagttgtttttagcttatttccataaacttttcagcatagcttatgaaaacagttt 55547111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 263 - 339
Target Start/End: Original strand, 7694009 - 7694085
Alignment:
Q  263 atgacatgtccataagttgttttcggcttatttcgataagctttccgagacagcttatgaaaacagtttatagctta 339  Q
    ||||||||| |||||||||||||| ||||||||| |||| || |||  || | ||||||||||||| ||||||||||    
T  7694009 atgacatgttcataagttgttttcagcttatttccataaactctccaggataacttatgaaaacagcttatagctta 7694085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 276 - 339
Target Start/End: Original strand, 18628555 - 18628618
Alignment:
Q  276 aagttgttttcggcttatttcgataagctttccgagacagcttatgaaaacagtttatagctta 339  Q
    ||||||||||| ||||||||| ||||||| ||| ||| | ||||||||||||||||||| ||||    
T  18628555 aagttgttttcagcttatttccataagctctccaagataacttatgaaaacagtttataactta 18628618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 267 - 390
Target Start/End: Original strand, 45128313 - 45128436
Alignment:
Q  267 catgtccataagttgttttcggcttatttcgataagctttccgagacagcttatgaaaacagtttatagcttagcttctaataaattgactttatattat 366  Q
    ||||||||| || ||||||| ||||||||| |||||||||    ||||| ||||||||||| |||||||||||  |   ||||| |||| || || ||||    
T  45128313 catgtccatgagctgttttcagcttatttccataagctttataggacagtttatgaaaacaatttatagcttatatgagaataatttgatttgattttat 45128412  T
Q  367 ctcttgtcacagaaatagtttata 390  Q
    || |||| | ||||||||||||||    
T  45128413 cttttgttatagaaatagtttata 45128436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 261 - 339
Target Start/End: Complemental strand, 52754672 - 52754595
Alignment:
Q  261 ttatgacatgtccataagttgttttcggcttatttcgataagctttccgagacagcttatgaaaacagtttatagctta 339  Q
    ||||||| |||||||||| || |||| |||||||||  |||| ||||||| | ||||||||||||||| ||||||||||    
T  52754672 ttatgacgtgtccataagctgctttcagcttatttcc-taagatttccgaaatagcttatgaaaacagcttatagctta 52754595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 260 - 308
Target Start/End: Complemental strand, 43824357 - 43824309
Alignment:
Q  260 cttatgacatgtccataagttgttttcggcttatttcgataagctttcc 308  Q
    |||||| ||||| |||||||||||||| ||||||||| |||||||||||    
T  43824357 cttatggcatgttcataagttgttttcagcttatttccataagctttcc 43824309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 273 - 336
Target Start/End: Complemental strand, 46110264 - 46110201
Alignment:
Q  273 cataagttgttttcggcttatttcgataagctttccgagacagcttatgaaaacagtttatagc 336  Q
    |||||||||||||| ||||||||| ||||||| ||    | |||||||||||||||||||||||    
T  46110264 cataagttgttttcagcttatttctataagctctcaatcatagcttatgaaaacagtttatagc 46110201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 258 - 327
Target Start/End: Complemental strand, 2996649 - 2996580
Alignment:
Q  258 aacttatgacatgtccataagttgttttcggcttatttcgataagctttccgagacagcttatgaaaaca 327  Q
    ||||||||||||||||||||| | |||||  |||||||  ||| ||| ||| ||| ||||||||||||||    
T  2996649 aacttatgacatgtccataagcttttttcaacttattttcatacgctctccaagatagcttatgaaaaca 2996580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 258 - 327
Target Start/End: Complemental strand, 4471244 - 4471175
Alignment:
Q  258 aacttatgacatgtccataagttgttttcggcttatttcgataagctttccgagacagcttatgaaaaca 327  Q
    |||||||||||| |||||||||||| |||  |||||||  | ||||||| | ||| ||||||||||||||    
T  4471244 aacttatgacatatccataagttgtattcaacttattttcagaagcttttcaagatagcttatgaaaaca 4471175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 243 - 304
Target Start/End: Original strand, 27123331 - 27123392
Alignment:
Q  243 agagtttatggacataacttatgacatgtccataagttgttttcggcttatttcgataagct 304  Q
    |||| ||||||| | |||||||||||||||  ||||||||||||  |||||||| |||||||    
T  27123331 agagcttatggaaacaacttatgacatgtctttaagttgttttcaacttatttccataagct 27123392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 262 - 339
Target Start/End: Original strand, 28300297 - 28300374
Alignment:
Q  262 tatgacatgtccataagttgttttcggcttatttcgataagctttccgagacagcttatgaaaacagtttatagctta 339  Q
    |||||||||| | ||||||||||||  |||||||  ||||||| | | ||| ||| |||||||| |||||||||||||    
T  28300297 tatgacatgttcttaagttgttttcaacttattttcataagctcttcaagatagcctatgaaaatagtttatagctta 28300374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 258 - 331
Target Start/End: Complemental strand, 28615599 - 28615526
Alignment:
Q  258 aacttatgacatgtccataagttgttttcggcttatttcgataagctttccgagacagcttatgaaaacagttt 331  Q
    |||||||||||||||||| || | |||||  |||||||| ||||||| ||| ||| ||| ||| ||||||||||    
T  28615599 aacttatgacatgtccattagatattttcaccttatttccataagctctccaagatagcctataaaaacagttt 28615526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 260 - 301
Target Start/End: Original strand, 29467620 - 29467661
Alignment:
Q  260 cttatgacatgtccataagttgttttcggcttatttcgataa 301  Q
    ||||||||||||||||||| ||||||| ||||||||| ||||    
T  29467620 cttatgacatgtccataagctgttttcagcttatttccataa 29467661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 255 - 296
Target Start/End: Complemental strand, 46201427 - 46201386
Alignment:
Q  255 cataacttatgacatgtccataagttgttttcggcttatttc 296  Q
    ||||||||||||||||| |||| ||||||||| |||||||||    
T  46201427 cataacttatgacatgttcataggttgttttcagcttatttc 46201386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 258 - 339
Target Start/End: Original strand, 50800024 - 50800104
Alignment:
Q  258 aacttatgacatgtccataagttgttttcggcttatttcgataagctttccgagacagcttatgaaaacagtttatagctta 339  Q
    ||||||||||||||| ||||| ||||||| ||||||||| | ||| | |||  || |||||| |||||||| ||||||||||    
T  50800024 aacttatgacatgtctataagctgttttcagcttatttcca-aagttctccatgatagcttaagaaaacagcttatagctta 50800104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0044 (Bit Score: 45; Significance: 3e-16; HSPs: 1)
Name: scaffold0044
Description:

Target: scaffold0044; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 248 - 339
Target Start/End: Original strand, 51936 - 52025
Alignment:
Q  248 ttatggacataacttatgacatgtccataagttgttttcggcttatttcgataagctttccgagacagcttatgaaaacagtttatagctta 339  Q
    ||||||| |||| ||||||||||||||||||||||||||  ||||||||| |||| ||||| ||| | || |||||||||| ||||||||||    
T  51936 ttatggaaataatttatgacatgtccataagttgttttc--cttatttcggtaagttttccaagataactaatgaaaacagcttatagctta 52025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 32)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 241 - 304
Target Start/End: Complemental strand, 9027671 - 9027608
Alignment:
Q  241 aaagagtttatggacataacttatgacatgtccataagttgttttcggcttatttcgataagct 304  Q
    |||||| ||||||| ||||||||||||||||||||||||||||||| ||||||||  |||||||    
T  9027671 aaagagcttatggaaataacttatgacatgtccataagttgttttcagcttattttcataagct 9027608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 258 - 327
Target Start/End: Original strand, 9667979 - 9668048
Alignment:
Q  258 aacttatgacatgtccataagttgttttcggcttatttcgataagctttccgagacagcttatgaaaaca 327  Q
    ||||||||||||||||||||| |||||||  |||||||| ||||||| ||||| |||| |||||||||||    
T  9667979 aacttatgacatgtccataagctgttttcaacttatttccataagctctccgaaacagtttatgaaaaca 9668048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 263 - 327
Target Start/End: Complemental strand, 31583750 - 31583686
Alignment:
Q  263 atgacatgtccataagttgttttcggcttatttcgataagctttccgagacagcttatgaaaaca 327  Q
    ||||||||||||||||||||||||  |||||||| ||||||||| || || ||||||||||||||    
T  31583750 atgacatgtccataagttgttttcaacttatttccataagcttttcgggatagcttatgaaaaca 31583686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 260 - 327
Target Start/End: Original strand, 2160933 - 2161000
Alignment:
Q  260 cttatgacatgtccataagttgttttcggcttatttcgataagctttccgagacagcttatgaaaaca 327  Q
    |||| ||||||||||||||||||||||  |||||||| |||| |||||| |||||||||| |||||||    
T  2160933 cttacgacatgtccataagttgttttcaacttatttccataatctttccaagacagcttaggaaaaca 2161000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 258 - 392
Target Start/End: Original strand, 281842 - 281976
Alignment:
Q  258 aacttatgacatgtccataagttgttttcggcttatttcgataagctttccgagacagcttatgaaaacagtttatagcttagcttctaataaattgact 357  Q
    ||||||||||||||| ||||||||||||| ||||||||| || |||| ||   || |||||||||| |||| ||||||||||  |   || || ||||||    
T  281842 aacttatgacatgtctataagttgttttcagcttatttccatgagctctctaggatagcttatgaacacagcttatagcttatatgaaaacaagttgact 281941  T
Q  358 ttatattatctcttgtcacagaaatagtttataga 392  Q
    |||| |||||| |||| | || ||||| |||||||    
T  281942 ttattttatcttttgttataggaatagcttataga 281976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 260 - 339
Target Start/End: Original strand, 3168257 - 3168336
Alignment:
Q  260 cttatgacatgtccataagttgttttcggcttatttcgataagctttccgagacagcttatgaaaacagtttatagctta 339  Q
    ||||||||||||||||  | ||||||| |||||||||  |||||| |||  || |||||| |||||||||||||||||||    
T  3168257 cttatgacatgtccatcggctgttttcagcttatttccttaagctctccaggatagcttaagaaaacagtttatagctta 3168336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 256 - 335
Target Start/End: Original strand, 19275628 - 19275707
Alignment:
Q  256 ataacttatgacatgtccataagttgttttcggcttatttcgataagctttccgagacagcttatgaaaacagtttatag 335  Q
    |||| |||||||||||||| ||| || |||||| ||||||| ||||||| | |  || ||||||||||||||||||||||    
T  19275628 ataatttatgacatgtccacaagctgatttcggtttatttccataagctcttcatgatagcttatgaaaacagtttatag 19275707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 248 - 339
Target Start/End: Original strand, 28088207 - 28088297
Alignment:
Q  248 ttatggacataacttatgacatgtccataagttgttttcggcttatttcgataagctttccgagacagcttatgaaaacagtttatagctta 339  Q
    ||||||| | ||||||| ||||||| ||| ||||||||  ||||||||| || |||| |||  || ||||||||||||||||||||||||||    
T  28088207 ttatggaaacaacttat-acatgtctataggttgttttgagcttatttccatgagctctccatgatagcttatgaaaacagtttatagctta 28088297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 258 - 304
Target Start/End: Complemental strand, 6537023 - 6536977
Alignment:
Q  258 aacttatgacatgtccataagttgttttcggcttatttcgataagct 304  Q
    |||||||||||||| |||||||||||||| ||||||||| |||||||    
T  6537023 aacttatgacatgttcataagttgttttcagcttatttccataagct 6536977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 258 - 296
Target Start/End: Original strand, 20377914 - 20377952
Alignment:
Q  258 aacttatgacatgtccataagttgttttcggcttatttc 296  Q
    ||||||||||||||| |||||||||||||||||||||||    
T  20377914 aacttatgacatgtctataagttgttttcggcttatttc 20377952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 262 - 304
Target Start/End: Original strand, 27909636 - 27909678
Alignment:
Q  262 tatgacatgtccataagttgttttcggcttatttcgataagct 304  Q
    ||||||||||||||||||||||||| ||||||||| |||||||    
T  27909636 tatgacatgtccataagttgttttcagcttatttccataagct 27909678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 247 - 333
Target Start/End: Complemental strand, 33887917 - 33887831
Alignment:
Q  247 tttatggacataacttatgacatgtccataagttgttttcggcttatttcgataagctttccgagacagcttatgaaaacagtttat 333  Q
    |||||| | ||| |||||||||||| || |||||||||||  |||||||| |||||| || |  || ||||||||||||||||||||    
T  33887917 tttatgaaaatagcttatgacatgttcacaagttgttttcaacttatttccataagcatttcaggatagcttatgaaaacagtttat 33887831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 250 - 307
Target Start/End: Original strand, 733163 - 733220
Alignment:
Q  250 atggacataacttatgacatgtccataagttgttttcggcttatttcgataagctttc 307  Q
    ||||| ||||||||||||||||||| ||||||||||| || |||||| ||||| ||||    
T  733163 atggaaataacttatgacatgtccacaagttgttttcagcatatttctataagttttc 733220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 258 - 327
Target Start/End: Complemental strand, 2112276 - 2112207
Alignment:
Q  258 aacttatgacatgtccataagttgttttcggcttatttcgataagctttccgagacagcttatgaaaaca 327  Q
    |||||||||||||| |||||||||||||||| ||||||| ||||||  ||  ||| || |||||||||||    
T  2112276 aacttatgacatgttcataagttgttttcggtttatttctataagcactctaagatagtttatgaaaaca 2112207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 258 - 327
Target Start/End: Complemental strand, 10031808 - 10031739
Alignment:
Q  258 aacttatgacatgtccataagttgttttcggcttatttcgataagctttccgagacagcttatgaaaaca 327  Q
    |||||| ||||| ||||||||||||||||  ||||||||  |||||| ||| ||||||||||| ||||||    
T  10031808 aacttacgacatatccataagttgttttcatcttatttccttaagctctccaagacagcttataaaaaca 10031739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 261 - 325
Target Start/End: Complemental strand, 4420716 - 4420652
Alignment:
Q  261 ttatgacatgtccataagttgttttcggcttatttcgataagctttccgagacagcttatgaaaa 325  Q
    ||||||||||| |||||| ||||||| ||||||||| ||||||| ||| ||| |||||| |||||    
T  4420716 ttatgacatgttcataagctgttttcagcttatttccataagctctccaagatagcttaggaaaa 4420652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 250 - 334
Target Start/End: Complemental strand, 6647471 - 6647387
Alignment:
Q  250 atggacataacttatgacatgtccataagttgttttcggcttatttcgataagctttccgagacagcttatgaaaacagtttata 334  Q
    ||||| ||| |||||||||||| |||||| |||||||  |||||||  ||||||| ||  ||| ||||||||||||||| |||||    
T  6647471 atggaaatagcttatgacatgttcataagatgttttcaacttattttcataagctctctaagatagcttatgaaaacagattata 6647387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 260 - 304
Target Start/End: Original strand, 7785740 - 7785784
Alignment:
Q  260 cttatgacatgtccataagttgttttcggcttatttcgataagct 304  Q
    ||||||||||||| ||||||||||||| ||||||||| |||||||    
T  7785740 cttatgacatgtctataagttgttttcagcttatttccataagct 7785784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 260 - 339
Target Start/End: Complemental strand, 283169 - 283090
Alignment:
Q  260 cttatgacatgtccataagttgttttcggcttatttcgataagctttccgagacagcttatgaaaacagtttatagctta 339  Q
    ||||||||||||||||||  | ||||| ||||||||| |||||||| |  ||| ||| |||| |||||| ||||||||||    
T  283169 cttatgacatgtccataaactattttcagcttatttctataagcttccgaagatagcctatgcaaacagattatagctta 283090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 242 - 325
Target Start/End: Complemental strand, 2455902 - 2455819
Alignment:
Q  242 aagagtttatggacataacttatgacatgtccataagttgttttcggcttatttcgataagctttccgagacagcttatgaaaa 325  Q
    ||||| ||||||| | ||||||||||||| ||||||  | |||||  |||||||| ||||||| ||| ||| ||||||||||||    
T  2455902 aagagcttatggaaacaacttatgacatgcccataaactattttcaacttatttccataagctctccaagatagcttatgaaaa 2455819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 242 - 325
Target Start/End: Complemental strand, 2514794 - 2514711
Alignment:
Q  242 aagagtttatggacataacttatgacatgtccataagttgttttcggcttatttcgataagctttccgagacagcttatgaaaa 325  Q
    |||||| |||||| |||||||||||||| | |||||| |||||||| |||| ||| | ||| | |||  |||||||||||||||    
T  2514794 aagagtgtatggaaataacttatgacatattcataagctgttttcgtcttacttccaaaagatctccaggacagcttatgaaaa 2514711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 243 - 326
Target Start/End: Original strand, 10616520 - 10616603
Alignment:
Q  243 agagtttatggacataacttatgacatgtccataagttgttttcggcttatttcgataagctttccgagacagcttatgaaaac 326  Q
    |||| ||||||| | |||||||||||||||| |||||||| ||| ||||||||  ||||||| ||| | | ||||||| |||||    
T  10616520 agagcttatggaaacaacttatgacatgtccgtaagttgtgttcagcttatttttataagctctccaaaatagcttattaaaac 10616603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 268 - 327
Target Start/End: Complemental strand, 20351214 - 20351155
Alignment:
Q  268 atgtccataagttgttttcggcttatttcgataagctttccgagacagcttatgaaaaca 327  Q
    |||||| || ||||||||| ||||||||  ||||||| ||||||| ||||||||||||||    
T  20351214 atgtccttatgttgttttcagcttatttttataagctatccgagatagcttatgaaaaca 20351155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 260 - 323
Target Start/End: Complemental strand, 34939818 - 34939755
Alignment:
Q  260 cttatgacatgtccataagttgttttcggcttatttcgataagctttccgagacagcttatgaa 323  Q
    |||||||||||||||||| |||||||| ||||||||| |||| || |||  || ||||||||||    
T  34939818 cttatgacatgtccataaattgttttcagcttatttccataaactctccaggatagcttatgaa 34939755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 396 - 426
Target Start/End: Original strand, 8470132 - 8470162
Alignment:
Q  396 taagcacttaattaagttgtttatctaaaca 426  Q
    |||||||||||||||||||||||||||||||    
T  8470132 taagcacttaattaagttgtttatctaaaca 8470162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 258 - 304
Target Start/End: Complemental strand, 30863322 - 30863276
Alignment:
Q  258 aacttatgacatgtccataagttgttttcggcttatttcgataagct 304  Q
    |||||||||||||| |||||||||||||| ||||| ||| |||||||    
T  30863322 aacttatgacatgtacataagttgttttcagcttacttctataagct 30863276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 243 - 301
Target Start/End: Complemental strand, 34939604 - 34939546
Alignment:
Q  243 agagtttatggacataacttatgacatgtccataagttgttttcggcttatttcgataa 301  Q
    |||| ||||||| | ||||||||||| |||| |||||||||||| ||||||||| ||||    
T  34939604 agagcttatggaaacaacttatgacacgtccgtaagttgttttcagcttatttccataa 34939546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 243 - 296
Target Start/End: Original strand, 2034425 - 2034478
Alignment:
Q  243 agagtttatggacataacttatgacatgtccataagttgttttcggcttatttc 296  Q
    |||||||||||| | | |||||||||| |||||||| ||||||| |||||||||    
T  2034425 agagtttatggaaacagcttatgacatttccataagctgttttcagcttatttc 2034478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 260 - 301
Target Start/End: Original strand, 2167154 - 2167195
Alignment:
Q  260 cttatgacatgtccataagttgttttcggcttatttcgataa 301  Q
    ||||||| ||||||||||||||||||| ||||||||| ||||    
T  2167154 cttatgatatgtccataagttgttttcagcttatttccataa 2167195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 260 - 301
Target Start/End: Original strand, 2178787 - 2178828
Alignment:
Q  260 cttatgacatgtccataagttgttttcggcttatttcgataa 301  Q
    ||||||| ||||||||||||||||||| ||||||||| ||||    
T  2178787 cttatgatatgtccataagttgttttcagcttatttccataa 2178828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 243 - 304
Target Start/End: Original strand, 2460130 - 2460191
Alignment:
Q  243 agagtttatggacataacttatgacatgtccataagttgttttcggcttatttcgataagct 304  Q
    |||| ||||||| | |||||||||||||||  ||||||||||||  |||||||| |||||||    
T  2460130 agagcttatggaaacaacttatgacatgtctttaagttgttttcaacttatttccataagct 2460191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #32
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 258 - 339
Target Start/End: Complemental strand, 4006790 - 4006709
Alignment:
Q  258 aacttatgacatgtccataagttgttttcggcttatttcgataagctttccgagacagcttatgaaaacagtttatagctta 339  Q
    |||||| || ||||||||||||| ||||| ||||||||  |||| || || | || ||||||||||||||  ||||||||||    
T  4006790 aacttacgatatgtccataagttattttcagcttattttcataacctctcagggatagcttatgaaaacaacttatagctta 4006709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 26)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 242 - 337
Target Start/End: Complemental strand, 32821901 - 32821806
Alignment:
Q  242 aagagtttatggacataacttatgacatgtccataagttgttttcggcttatttcgataagctttccgagacagcttatgaaaacagtttatagct 337  Q
    |||||||||| || | ||||||||||||||||||||| ||||||| | ||||||| ||||||| |    || ||||||||||||||||||||||||    
T  32821901 aagagtttatagaaacaacttatgacatgtccataagctgttttcagtttatttctataagctctttaggatagcttatgaaaacagtttatagct 32821806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 258 - 325
Target Start/End: Original strand, 34652030 - 34652097
Alignment:
Q  258 aacttatgacatgtccataagttgttttcggcttatttcgataagctttccgagacagcttatgaaaa 325  Q
    ||||||||||||||||||||| |||||||  |||||||| ||||||| ||| ||| ||||||||||||    
T  34652030 aacttatgacatgtccataagctgttttcaacttatttccataagctctccaagatagcttatgaaaa 34652097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 251 - 334
Target Start/End: Complemental strand, 36852555 - 36852472
Alignment:
Q  251 tggacataacttatgacatgtccataagttgttttcggcttatttcgataagctttccgagacagcttatgaaaacagtttata 334  Q
    |||| ||||||||||||||||| ||||  | ||||| | ||||||| ||||||| ||| ||| |||||||||||||||||||||    
T  36852555 tggatataacttatgacatgtctataaactattttcagattatttccataagctctccaagatagcttatgaaaacagtttata 36852472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 242 - 296
Target Start/End: Original strand, 9878660 - 9878714
Alignment:
Q  242 aagagtttatggacataacttatgacatgtccataagttgttttcggcttatttc 296  Q
    ||||| ||||||| | |||||||||||||||||||||||||||||| ||||||||    
T  9878660 aagagcttatggaaacaacttatgacatgtccataagttgttttcgacttatttc 9878714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 258 - 331
Target Start/End: Complemental strand, 7283072 - 7282999
Alignment:
Q  258 aacttatgacatgtccataagttgttttcggcttatttcgataagctttccgagacagcttatgaaaacagttt 331  Q
    ||||||||| |||||||||||||||||||  ||||| || ||||||| ||| | | ||||||||||||||||||    
T  7283072 aacttatgatatgtccataagttgttttcatcttatatccataagctctcccacatagcttatgaaaacagttt 7282999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 700 - 753
Target Start/End: Complemental strand, 18045626 - 18045573
Alignment:
Q  700 cctttgaacattgtatagttccataaccttgtcatagttctctgcccaccatct 753  Q
    ||||||||||||||| || ||||| ||||| |||||||||||||||||||||||    
T  18045626 cctttgaacattgtaaagctccatgaccttatcatagttctctgcccaccatct 18045573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 258 - 327
Target Start/End: Original strand, 43065444 - 43065513
Alignment:
Q  258 aacttatgacatgtccataagttgttttcggcttatttcgataagctttccgagacagcttatgaaaaca 327  Q
    |||||||||||||||||||| |||||||| ||||||||| ||||||| |||  || | ||||||||||||    
T  43065444 aacttatgacatgtccataaattgttttcagcttatttcaataagctctccacgataacttatgaaaaca 43065513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 258 - 330
Target Start/End: Original strand, 1939326 - 1939398
Alignment:
Q  258 aacttatgacatgtccataagttgttttcggcttatttcgataagctttccgagacagcttatgaaaacagtt 330  Q
    ||||||||||||||||||||| |||||||  |||||||| ||||||| |||   | |||||||||||||||||    
T  1939326 aacttatgacatgtccataagctgttttcaacttatttccataagctctccagtatagcttatgaaaacagtt 1939398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 258 - 338
Target Start/End: Complemental strand, 9556315 - 9556235
Alignment:
Q  258 aacttatgacatgtccataagttgttttcggcttatttcgataagctttccgagacagcttatgaaaacagtttatagctt 338  Q
    |||| ||||||||||||||||| | ||||  |||||||  ||||||||||   || |||||||||||||||||||||||||    
T  9556315 aactaatgacatgtccataagtagatttcaacttattttcataagctttctaggatagcttatgaaaacagtttatagctt 9556235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 260 - 335
Target Start/End: Original strand, 29316771 - 29316846
Alignment:
Q  260 cttatgacatgtccataagttgttttcggcttatttcgataagctttccgagacagcttatgaaaacagtttatag 335  Q
    |||||||||||| |||||||| ||||| ||||||||| ||||| | ||| ||| |||| |||||||||| ||||||    
T  29316771 cttatgacatgttcataagttcttttcagcttatttccataagttctccaagatagctgatgaaaacagcttatag 29316846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 242 - 304
Target Start/End: Original strand, 14299609 - 14299671
Alignment:
Q  242 aagagtttatggacataacttatgacatgtccataagttgttttcggcttatttcgataagct 304  Q
    ||||||||||||| | |||||||||||| ||||||  |||||||| ||||||||| |||||||    
T  14299609 aagagtttatggaaacaacttatgacatatccatacattgttttcagcttatttctataagct 14299671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 258 - 295
Target Start/End: Original strand, 30538167 - 30538204
Alignment:
Q  258 aacttatgacatgtccataagttgttttcggcttattt 295  Q
    ||||||||||||||||||||||||||||| ||||||||    
T  30538167 aacttatgacatgtccataagttgttttcagcttattt 30538204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 258 - 307
Target Start/End: Original strand, 41809239 - 41809288
Alignment:
Q  258 aacttatgacatgtccataagttgttttcggcttatttcgataagctttc 307  Q
    |||||||||||||| |||||||||||||  ||||||||| ||||||||||    
T  41809239 aacttatgacatgttcataagttgtttttagcttatttccataagctttc 41809288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 258 - 327
Target Start/End: Original strand, 43910993 - 43911062
Alignment:
Q  258 aacttatgacatgtccataagttgttttcggcttatttcgataagctttccgagacagcttatgaaaaca 327  Q
    |||||||||||||| |||||||||||||| |||||||   | ||||||||| ||| ||||| ||||||||    
T  43910993 aacttatgacatgttcataagttgttttcagcttattatcacaagctttccaagatagcttttgaaaaca 43911062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 261 - 337
Target Start/End: Complemental strand, 16867812 - 16867736
Alignment:
Q  261 ttatgacatgtccataagttgttttcggcttatttcgataagctttccgagacagcttatgaaaacagtttatagct 337  Q
    ||||||||| | ||||||||||||||  |||||||| ||||||| ||| ||| ||||| ||||||||  ||||||||    
T  16867812 ttatgacatattcataagttgttttcaacttatttccataagctctccaagatagcttgtgaaaacaccttatagct 16867736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 256 - 304
Target Start/End: Original strand, 25796192 - 25796240
Alignment:
Q  256 ataacttatgacatgtccataagttgttttcggcttatttcgataagct 304  Q
    ||||||||| |||| |||||||||||||||| ||||||||| |||||||    
T  25796192 ataacttattacatatccataagttgttttcagcttatttcaataagct 25796240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 260 - 304
Target Start/End: Original strand, 28677655 - 28677699
Alignment:
Q  260 cttatgacatgtccataagttgttttcggcttatttcgataagct 304  Q
    |||||||||| | |||||||||||||||||||||||| |||||||    
T  28677655 cttatgacattttcataagttgttttcggcttatttccataagct 28677699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 263 - 327
Target Start/End: Original strand, 35379015 - 35379079
Alignment:
Q  263 atgacatgtccataagttgttttcggcttatttcgataagctttccgagacagcttatgaaaaca 327  Q
    ||||| ||| |||||||||||||| ||||||||  ||||||| ||| ||| ||||||||||||||    
T  35379015 atgacttgttcataagttgttttcagcttattttcataagctctccaagatagcttatgaaaaca 35379079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 260 - 339
Target Start/End: Complemental strand, 8017508 - 8017429
Alignment:
Q  260 cttatgacatgtccataagttgttttcggcttatttcgataagctttccgagacagcttatgaaaacagtttatagctta 339  Q
    ||||||| |||| ||||| |||||||| || |||||  ||||| | ||| ||| ||||||||||||||||||| ||||||    
T  8017508 cttatgatatgttcataatttgttttctgcgtattttcataagttctccaagatagcttatgaaaacagtttacagctta 8017429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 258 - 317
Target Start/End: Original strand, 14451044 - 14451103
Alignment:
Q  258 aacttatgacatgtccataagttgttttcggcttatttcgataagctttccgagacagct 317  Q
    ||||||||||||| ||||||| ||||||| ||||||||| | ||||| ||| ||||||||    
T  14451044 aacttatgacatgaccataagctgttttcagcttatttccacaagctatccaagacagct 14451103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 258 - 333
Target Start/End: Original strand, 38077067 - 38077142
Alignment:
Q  258 aacttatgacatgtccataagttgttttcggcttatttcgataagctttccgagacagcttatgaaaacagtttat 333  Q
    |||||| ||||| ||||||||  |||||| || |||||| ||||||| |||| || |||||| |||||||||||||    
T  38077067 aacttacgacatttccataagaggttttcagcctatttctataagctctccgtgatagcttaagaaaacagtttat 38077142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 256 - 302
Target Start/End: Complemental strand, 10285938 - 10285892
Alignment:
Q  256 ataacttatgacatgtccataagttgttttcggcttatttcgataag 302  Q
    ||||||||||||||||||||||| |||||||  |||||||| |||||    
T  10285938 ataacttatgacatgtccataagctgttttcaacttatttccataag 10285892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 243 - 301
Target Start/End: Original strand, 33525946 - 33526004
Alignment:
Q  243 agagtttatggacataacttatgacatgtccataagttgttttcggcttatttcgataa 301  Q
    |||||| ||||| | ||||||| |||||||||||||||| |||| ||||||||| ||||    
T  33525946 agagttcatggaaacaacttataacatgtccataagttggtttcagcttatttctataa 33526004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 247 - 304
Target Start/End: Original strand, 1160654 - 1160711
Alignment:
Q  247 tttatggacataacttatgacatgtccataagttgttttcggcttatttcgataagct 304  Q
    |||||||| | ||| ||||||||||||||||||||||||  | ||||||| |||||||    
T  1160654 tttatggaaacaacctatgacatgtccataagttgtttttagtttatttccataagct 1160711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 258 - 339
Target Start/End: Complemental strand, 43141947 - 43141866
Alignment:
Q  258 aacttatgacatgtccataagttgttttcggcttatttcgataagctttccgagacagcttatgaaaacagtttatagctta 339  Q
    ||||||||||||| |||||||||||||||   ||||||| |||| || | |  || ||||||||||||||  ||||||||||    
T  43141947 aacttatgacatgcccataagttgttttcattttatttccataaactcttcaggatagcttatgaaaacatcttatagctta 43141866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 258 - 295
Target Start/End: Original strand, 44606104 - 44606141
Alignment:
Q  258 aacttatgacatgtccataagttgttttcggcttattt 295  Q
    ||||||||||||||||||||||||||||| ||| ||||    
T  44606104 aacttatgacatgtccataagttgttttcagctgattt 44606141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 43; Significance: 0.000000000000005; HSPs: 34)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 260 - 339
Target Start/End: Original strand, 28689448 - 28689529
Alignment:
Q  260 cttatgacatgtccataagttgttttcggcttatttcgataagctttccgagacagct--tatgaaaacagtttatagctta 339  Q
    ||||||||||||||||||||||||||| ||||||||  ||||||||||| ||| ||||  ||||||||||  ||||||||||    
T  28689448 cttatgacatgtccataagttgttttcagcttattttcataagctttccaagatagcttatatgaaaacaacttatagctta 28689529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 258 - 339
Target Start/End: Complemental strand, 17420279 - 17420198
Alignment:
Q  258 aacttatgacatgtccataagttgttttcggcttatttcgataagctttccgagacagcttatgaaaacagtttatagctta 339  Q
    ||||||| |||||||||||| ||||||||  |||||||| || || |||| |||| |||||| |||||||||||||||||||    
T  17420279 aacttattacatgtccataaattgttttcaacttatttccattagttttctgagatagcttacgaaaacagtttatagctta 17420198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 243 - 307
Target Start/End: Original strand, 19412576 - 19412640
Alignment:
Q  243 agagtttatggacataacttatgacatgtccataagttgttttcggcttatttcgataagctttc 307  Q
    |||||||||||| | ||||||||||||||||||||| || ||| |||||||||| ||||||||||    
T  19412576 agagtttatggaaacaacttatgacatgtccataagctgattttggcttatttccataagctttc 19412640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 243 - 334
Target Start/End: Complemental strand, 27140569 - 27140478
Alignment:
Q  243 agagtttatggacataacttatgacatgtccataagttgttttcggcttatttcgataagctttccgagacagcttatgaaaacagtttata 334  Q
    |||||||| ||| | | ||||||||||||||||||||||||||| ||||||||  ||||||| |||  || ||||||| ||||||| |||||    
T  27140569 agagtttaaggaaacagcttatgacatgtccataagttgttttcagcttatttgcataagctctccatgatagcttataaaaacagcttata 27140478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 261 - 328
Target Start/End: Complemental strand, 35017649 - 35017582
Alignment:
Q  261 ttatgacatgtccataagttgttttcggcttatttcgataagctttccgagacagcttatgaaaacag 328  Q
    |||||||||||||||||||| |||||  |||||||| ||||||| |||  ||||||||||||||||||    
T  35017649 ttatgacatgtccataagttattttcaacttatttccataagctctccaggacagcttatgaaaacag 35017582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 243 - 339
Target Start/End: Original strand, 38867810 - 38867906
Alignment:
Q  243 agagtttatggacataacttatgacatgtccataagttgttttcggcttatttcgataagctttccgagacagcttatgaaaacagtttatagctta 339  Q
    |||| ||||||| ||||||||||| |||||||| |||||||||  ||||||||  ||||| | | | ||| | ||||||||||||||||| ||||||    
T  38867810 agagcttatggaaataacttatgatatgtccatcagttgtttttagcttattttcataagttcttcaagataacttatgaaaacagtttaaagctta 38867906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 268 - 339
Target Start/End: Complemental strand, 6659580 - 6659509
Alignment:
Q  268 atgtccataagttgttttcggcttatttcgataagctttccgagacagcttatgaaaacagtttatagctta 339  Q
    ||||||||||||||||||| ||||||||||||||||| ||   |  ||||||||||||||  ||||||||||    
T  6659580 atgtccataagttgttttcagcttatttcgataagctctcttggttagcttatgaaaacatcttatagctta 6659509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 260 - 327
Target Start/End: Original strand, 12564495 - 12564562
Alignment:
Q  260 cttatgacatgtccataagttgttttcggcttatttcgataagctttccgagacagcttatgaaaaca 327  Q
    ||||||||| ||| ||||||||||||| ||||||||| ||||| | ||| ||| ||||||||||||||    
T  12564495 cttatgacaagtcaataagttgttttcagcttatttccataagttctccaagatagcttatgaaaaca 12564562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 274 - 373
Target Start/End: Original strand, 34179882 - 34179981
Alignment:
Q  274 ataagttgttttcggcttatttcgataagctttccgagacagcttatgaaaacagtttatagcttagcttctaataaattgactttatattatctcttgt 373  Q
    ||||||||||||| || |||||| |||| |||| |  || || |||||||||||||||||||||||| ||  || || |||||||||| |||||| ||||    
T  34179882 ataagttgttttcagcgtatttccataaacttttcaggatagtttatgaaaacagtttatagcttagattaaaacaatttgactttattttatcttttgt 34179981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 260 - 339
Target Start/End: Complemental strand, 34290310 - 34290231
Alignment:
Q  260 cttatgacatgtccataagttgttttcggcttatttcgataagctttccgagacagcttatgaaaacagtttatagctta 339  Q
    |||||||||| | |||||||||||||| ||||||||  ||||| | | | ||| ||||||||||||||| ||||||||||    
T  34290310 cttatgacatattcataagttgttttcagcttattttcataagttcttcaagatagcttatgaaaacagcttatagctta 34290231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 267 - 338
Target Start/End: Original strand, 39347970 - 39348041
Alignment:
Q  267 catgtccataagttgttttcggcttatttcgataagctttccgagacagcttatgaaaacagtttatagctt 338  Q
    |||||||||||||||||||| ||||||||| ||||||||| |  || || |||||||||||  |||||||||    
T  39347970 catgtccataagttgttttcagcttatttccataagctttgcaggatagtttatgaaaacaacttatagctt 39348041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 261 - 339
Target Start/End: Complemental strand, 4549303 - 4549225
Alignment:
Q  261 ttatgacatgtccataagttgttttcggcttatttcgataagctttccgagacagcttatgaaaacagtttatagctta 339  Q
    |||||||||||| ||||||||||||| ||||||||| ||||||| |||  || || || ||||| ||| ||||||||||    
T  4549303 ttatgacatgtctataagttgttttcagcttatttccataagctatcctggatagtttgtgaaagcagcttatagctta 4549225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 258 - 335
Target Start/End: Complemental strand, 4868476 - 4868399
Alignment:
Q  258 aacttatgacatgtccataagttgttttcggcttatttcgataagctttccgagacagcttatgaaaacagtttatag 335  Q
    ||||||||||||||| |||||||||||||  |||||||  ||||||||| | | | || ||| |||||||||||||||    
T  4868476 aacttatgacatgtcaataagttgttttcaacttatttacataagcttttcaaaatagtttacgaaaacagtttatag 4868399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 266 - 339
Target Start/End: Complemental strand, 6279467 - 6279394
Alignment:
Q  266 acatgtccataagttgttttcggcttatttcgataagctttccgagacagcttatgaaaacagtttatagctta 339  Q
    ||||||||||||||||||||| || |||||| ||||||| ||   || |||||||||||| |||||| ||||||    
T  6279467 acatgtccataagttgttttcagcgtatttccataagctctctaggatagcttatgaaaatagtttaaagctta 6279394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 262 - 339
Target Start/End: Original strand, 14629964 - 14630041
Alignment:
Q  262 tatgacatgtccataagttgttttcggcttatttcgataagctttccgagacagcttatgaaaacagtttatagctta 339  Q
    ||||| |||| |||||||||||||| ||||||||| ||||  | ||| ||| |||||||||||| || ||||||||||    
T  14629964 tatgatatgttcataagttgttttcagcttatttccataaagtctccaagatagcttatgaaaatagcttatagctta 14630041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 261 - 306
Target Start/End: Original strand, 29007713 - 29007758
Alignment:
Q  261 ttatgacatgtccataagttgttttcggcttatttcgataagcttt 306  Q
    |||||| |||| |||||||||||||| |||||||||||||||||||    
T  29007713 ttatgatatgttcataagttgttttcagcttatttcgataagcttt 29007758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 258 - 339
Target Start/End: Complemental strand, 30371224 - 30371143
Alignment:
Q  258 aacttatgacatgtccataagttgttttcggcttatttcgataagctttccgagacagcttatgaaaacagtttatagctta 339  Q
    |||| |||||||||||||||||||||||| ||||||||| ||| ||| ||| | |   ||||||||||||  ||||||||||    
T  30371224 aactaatgacatgtccataagttgttttcagcttatttcaatacgctctccaaaatgtcttatgaaaacaacttatagctta 30371143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 260 - 296
Target Start/End: Original strand, 12477283 - 12477319
Alignment:
Q  260 cttatgacatgtccataagttgttttcggcttatttc 296  Q
    ||||||||||||||||||||||||||| |||||||||    
T  12477283 cttatgacatgtccataagttgttttcagcttatttc 12477319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 260 - 339
Target Start/End: Complemental strand, 4622167 - 4622088
Alignment:
Q  260 cttatgacatgtccataagttgttttcggcttatttcgataagctttccgagacagcttatgaaaacagtttatagctta 339  Q
    ||||||||||||||||||| ||||||  ||||||||  | ||||| ||| ||| ||| |||| |||||| ||||||||||    
T  4622167 cttatgacatgtccataagctgtttttagcttattttcacaagctctccaagatagcatatggaaacagcttatagctta 4622088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 258 - 325
Target Start/End: Original strand, 4699609 - 4699676
Alignment:
Q  258 aacttatgacatgtccataagttgttttcggcttatttcgataagctttccgagacagcttatgaaaa 325  Q
    |||||||||||||| |||||| ||||||  ||||||||| ||||||| |||| || || |||||||||    
T  4699609 aacttatgacatgttcataagctgtttttagcttatttctataagctctccgggatagtttatgaaaa 4699676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 260 - 335
Target Start/End: Original strand, 7136994 - 7137069
Alignment:
Q  260 cttatgacatgtccataagttgttttcggcttatttcgataagctttccgagacagcttatgaaaacagtttatag 335  Q
    |||||||||| | |||||||| ||||| ||||||||  ||||| | ||| ||| ||||||||||||||| ||||||    
T  7136994 cttatgacatattcataagttattttcagcttattttcataagttctccaagatagcttatgaaaacagcttatag 7137069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 261 - 304
Target Start/End: Original strand, 7761608 - 7761651
Alignment:
Q  261 ttatgacatgtccataagttgttttcggcttatttcgataagct 304  Q
    |||||||||||||||||||| ||||| |||||||| ||||||||    
T  7761608 ttatgacatgtccataagtttttttcagcttattttgataagct 7761651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 258 - 301
Target Start/End: Complemental strand, 15579558 - 15579515
Alignment:
Q  258 aacttatgacatgtccataagttgttttcggcttatttcgataa 301  Q
    |||||||||||||||||||||||||| || ||||||||| ||||    
T  15579558 aacttatgacatgtccataagttgttctcagcttatttccataa 15579515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 260 - 327
Target Start/End: Original strand, 27963366 - 27963433
Alignment:
Q  260 cttatgacatgtccataagttgttttcggcttatttcgataagctttccgagacagcttatgaaaaca 327  Q
    ||||||||||||||||||||||||||  ||||||||  ||||||| |||   | ||||||||||||||    
T  27963366 cttatgacatgtccataagttgtttttagcttatttatataagctctccataatagcttatgaaaaca 27963433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 268 - 331
Target Start/End: Original strand, 28077073 - 28077136
Alignment:
Q  268 atgtccataagttgttttcggcttatttcgataagctttccgagacagcttatgaaaacagttt 331  Q
    |||| |||||||||||||| ||||||||| ||||||| ||  | | ||||||||||||||||||    
T  28077073 atgttcataagttgttttcagcttatttcaataagctctctaaaatagcttatgaaaacagttt 28077136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 258 - 321
Target Start/End: Original strand, 46252676 - 46252739
Alignment:
Q  258 aacttatgacatgtccataagttgttttcggcttatttcgataagctttccgagacagcttatg 321  Q
    |||||||||||||| |||||||||||||| | ||||||  ||||||| ||| ||| ||||||||    
T  46252676 aacttatgacatgttcataagttgttttcaggttattttcataagctctccaagatagcttatg 46252739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 261 - 327
Target Start/End: Original strand, 16981933 - 16981999
Alignment:
Q  261 ttatgacatgtccataagttgttttcggcttatttcgataagctttccgagacagcttatgaaaaca 327  Q
    |||||||||||||||||||||||||  ||||||||  ||||||| |||  || ||||||||| ||||    
T  16981933 ttatgacatgtccataagttgtttttagcttatttatataagctctccatgatagcttatgataaca 16981999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 243 - 301
Target Start/End: Original strand, 33722380 - 33722438
Alignment:
Q  243 agagtttatggacataacttatgacatgtccataagttgttttcggcttatttcgataa 301  Q
    ||||||||| || ||||| |||||||| || ||||||||||||| ||||||||| ||||    
T  33722380 agagtttatagaaataacatatgacatatctataagttgttttcagcttatttccataa 33722438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 261 - 295
Target Start/End: Original strand, 37941982 - 37942016
Alignment:
Q  261 ttatgacatgtccataagttgttttcggcttattt 295  Q
    ||||||||||||||||||||||| |||||||||||    
T  37941982 ttatgacatgtccataagttgttctcggcttattt 37942016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 258 - 304
Target Start/End: Complemental strand, 49517137 - 49517091
Alignment:
Q  258 aacttatgacatgtccataagttgttttcggcttatttcgataagct 304  Q
    |||||||||||||||||||||| |||||| | |||||| ||||||||    
T  49517137 aacttatgacatgtccataagtggttttcaggttattttgataagct 49517091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 243 - 296
Target Start/End: Complemental strand, 6262829 - 6262776
Alignment:
Q  243 agagtttatggacataacttatgacatgtccataagttgttttcggcttatttc 296  Q
    |||| ||||| | ||||||||||| ||||||||||||||||||  |||||||||    
T  6262829 agagcttatgaaaataacttatgatatgtccataagttgttttaagcttatttc 6262776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 260 - 325
Target Start/End: Original strand, 10199404 - 10199469
Alignment:
Q  260 cttatgacatgtccataagttgttttcggcttatttcgataagctttccgagacagcttatgaaaa 325  Q
    |||||||||||| |||||||||||||| ||||||||  ||||||| ||  | | ||||||||||||    
T  10199404 cttatgacatgttcataagttgttttcagcttattttcataagctctctaaaatagcttatgaaaa 10199469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 255 - 296
Target Start/End: Original strand, 34278684 - 34278725
Alignment:
Q  255 cataacttatgacatgtccataagttgttttcggcttatttc 296  Q
    ||||||||||||||||| |||| ||||||||| |||||||||    
T  34278684 cataacttatgacatgttcataggttgttttcagcttatttc 34278725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 280 - 333
Target Start/End: Original strand, 51929715 - 51929768
Alignment:
Q  280 tgttttcggcttatttcgataagctttccgagacagcttatgaaaacagtttat 333  Q
    |||||||| |||||||  ||||||||||| ||| ||||||||||||||| ||||    
T  51929715 tgttttcgtcttatttacataagctttccaagatagcttatgaaaacagcttat 51929768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0286 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0286
Description:

Target: scaffold0286; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 260 - 327
Target Start/End: Complemental strand, 16184 - 16117
Alignment:
Q  260 cttatgacatgtccataagttgttttcggcttatttcgataagctttccgagacagcttatgaaaaca 327  Q
    |||| ||||||||||||||||||||||  |||||||| |||| |||||| |||||||||| |||||||    
T  16184 cttacgacatgtccataagttgttttcaacttatttccataatctttccaagacagcttaggaaaaca 16117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 244 - 284
Target Start/End: Complemental strand, 38682 - 38642
Alignment:
Q  244 gagtttatggacataacttatgacatgtccataagttgttt 284  Q
    ||||||||||| |||||||||||||||||||||||||||||    
T  38682 gagtttatggaaataacttatgacatgtccataagttgttt 38642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0147 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: scaffold0147
Description:

Target: scaffold0147; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 248 - 292
Target Start/End: Original strand, 12688 - 12732
Alignment:
Q  248 ttatggacataacttatgacatgtccataagttgttttcggctta 292  Q
    ||||||| | ||||||||||||||||||||||||||||| |||||    
T  12688 ttatggaaacaacttatgacatgtccataagttgttttcagctta 12732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 243 - 327
Target Start/End: Complemental strand, 27667 - 27583
Alignment:
Q  243 agagtttatggacataacttatgacatgtccataagttgttttcggcttatttcgataagctttccgagacagcttatgaaaaca 327  Q
    |||| ||||||| ||| ||||||||||| | ||||||||||||| ||||||||| | | |||| || ||| || |||||||||||    
T  27667 agagcttatggaaatagcttatgacatggctataagttgttttcagcttatttccacacgcttaccaagatagtttatgaaaaca 27583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0311 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0311
Description:

Target: scaffold0311; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 258 - 301
Target Start/End: Original strand, 10611 - 10654
Alignment:
Q  258 aacttatgacatgtccataagttgttttcggcttatttcgataa 301  Q
    |||| |||||||||||||||||||||||| ||||||||| ||||    
T  10611 aactaatgacatgtccataagttgttttcagcttatttccataa 10654  T

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Target: scaffold0153 (Bit Score: 31; Significance: 0.00000007; HSPs: 2)
Name: scaffold0153
Description:

Target: scaffold0153; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 262 - 324
Target Start/End: Original strand, 6492 - 6554
Alignment:
Q  262 tatgacatgtccataagttgttttcggcttatttcgataagctttccgagacagcttatgaaa 324  Q
    ||||||||||| ||||||||||||| | ||||||| ||||||| |||| ||  ||||||||||    
T  6492 tatgacatgtctataagttgttttcagtttatttccataagctctccgggattgcttatgaaa 6554  T

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Target: scaffold0153; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 262 - 324
Target Start/End: Original strand, 13512 - 13574
Alignment:
Q  262 tatgacatgtccataagttgttttcggcttatttcgataagctttccgagacagcttatgaaa 324  Q
    ||||||||||| ||||||||||||| | ||||||| ||||||| |||| ||  ||||||||||    
T  13512 tatgacatgtctataagttgttttcagtttatttccataagctctccgggattgcttatgaaa 13574  T

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Target: scaffold0254 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0254
Description:

Target: scaffold0254; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 260 - 301
Target Start/End: Complemental strand, 3547 - 3506
Alignment:
Q  260 cttatgacatgtccataagttgttttcggcttatttcgataa 301  Q
    ||||||| ||||||||||||||||||| ||||||||| ||||    
T  3547 cttatgatatgtccataagttgttttcagcttatttccataa 3506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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