View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2860_low_4 (Length: 338)
Name: NF2860_low_4
Description: NF2860
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2860_low_4 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 299; Significance: 1e-168; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 17 - 319
Target Start/End: Original strand, 2222217 - 2222519
Alignment:
| Q |
17 |
aactttctcaagtgaaaggttgaccaatgaagcaagtgcattgactcttacaacctcgttcttagacaaaatcaaagaacgcagaaaacatagtacccta |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2222217 |
aactttctcaagtgaaaggttgaccaatgaagcaagtgcattgactcttacaacctcgttcttagacaaaatcaaagaacgcagaaaacatagtacccta |
2222316 |
T |
|
| Q |
117 |
ttggtgcaaagttgaactctactttccaaattcgttcttgtgatttttctgagtgagattaaaccttcttctactataaccaattcatggtttctgagtt |
216 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2222317 |
ttgctgcaaagttgaactctactttccaaattcgttcttgtgatttttctgagtgagattaaaccttcttctactataaccaattcatggtttctgagtt |
2222416 |
T |
|
| Q |
217 |
ttgttactatttcttcttcttccggtgttgttgaaggttcaagttcagatgaagaaggtgaagagtaacagaaactttgaagctgtggtggtgttgttct |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2222417 |
ttgttactatttcttcttcttccggtgttgttgaaggttcaagttcagatgaagaaggtgaagagtaacagaaactttgaagctgtggtggtgttgttct |
2222516 |
T |
|
| Q |
317 |
tgt |
319 |
Q |
| |
|
||| |
|
|
| T |
2222517 |
tgt |
2222519 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University