View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2860_low_5 (Length: 273)
Name: NF2860_low_5
Description: NF2860
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2860_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 12 - 257
Target Start/End: Original strand, 14784941 - 14785188
Alignment:
| Q |
12 |
tcatcagatgaatgacgcttttcttacgaagatgctttggaatgttataaccaaacttgatgacctttggtgcaagattctttatagtaagtgtgggagt |
111 |
Q |
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| T |
14784941 |
tcatcagatgaatgatgcttttcttacgaagatgctttggaatgttataaccaaacttgatgacctttggtgcaaggttctttatagtaagtgtgggagt |
14785040 |
T |
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| Q |
112 |
aataaagatcttagagtaaccatagattctcaattatatgat--tctcctttgtggaaagctttaacaggtatctgggatcaatttcagcaaaatattgt |
209 |
Q |
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| T |
14785041 |
aataaagatcttagagaaaccatagattctcaatcatatgattctctcctttgtggaaagctttaacaggtatctgggatcaatttcagcaaaatattgt |
14785140 |
T |
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| Q |
210 |
gtggtggctgagcaatggtaacaatattaatttttgggtggataaata |
257 |
Q |
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| T |
14785141 |
gtggtagctgagcaatgataacaatattaatttttggatggataaata |
14785188 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 129; Significance: 8e-67; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 129; E-Value: 8e-67
Query Start/End: Original strand, 12 - 256
Target Start/End: Complemental strand, 31116673 - 31116429
Alignment:
| Q |
12 |
tcatcagatgaatgacgcttttcttacgaagatgctttggaatgttataaccaaacttgatgacctttggtgcaagattctttatagtaagtgtgggagt |
111 |
Q |
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|||||| ||||| |||| |||||||| ||||||||||| |||| | || ||||| ||||||||||| ||||| ||| ||||||||||||||| |||||| |
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| T |
31116673 |
tcatcatatgaaagacgtttttcttatgaagatgcttttgaatctgatcaccaagcttgatgacctatggtgtaagcttctttatagtaagtatgggagg |
31116574 |
T |
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| Q |
112 |
aataaagatcttagagtaaccatagattctcaattatatgattctcctttgtggaaagctttaacaggtatctgggatcaatttcagcaaaatattgtgt |
211 |
Q |
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| T |
31116573 |
aataaagatcttagggtaaccatagattctaaatcatatgattcccctttgtggaaagctttaacaagtatttgggattaatttaagcaaaatattgtgt |
31116474 |
T |
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| Q |
212 |
ggtggctgagcaatggtaacaatattaatttttgggtggataaat |
256 |
Q |
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| T |
31116473 |
ggcagcttggcaatggtaacaatattaacttttggatcgataaat |
31116429 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 147 - 256
Target Start/End: Original strand, 38061701 - 38061810
Alignment:
| Q |
147 |
atatgattctcctttgtggaaagctttaacaggtatctgggatcaatttcagcaaaatattgtgtggtggctgagcaatggtaacaatattaatttttgg |
246 |
Q |
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||||||||||||||| ||||||||||||||| |||| ||||| | |||||||||||||||||||||| | || || ||||||| |||||||||||||| |
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| T |
38061701 |
atatgattctcctttatggaaagctttaacatgtatttgggaacgatttcagcaaaatattgtgtggcagttgggcgatggtaataatattaatttttga |
38061800 |
T |
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| Q |
247 |
gtggataaat |
256 |
Q |
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||||||||| |
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| T |
38061801 |
atggataaat |
38061810 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 114; Significance: 7e-58; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 19 - 256
Target Start/End: Complemental strand, 48899049 - 48898812
Alignment:
| Q |
19 |
atgaatgacgcttttcttacgaagatgctttggaatgttataaccaaacttgatgacctttggtgcaagattctttatagtaagtgtgggagtaataaag |
118 |
Q |
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||||||||||||||||||| ||||||| |||||||| | || ||||| | | ||||||| ||||| ||| |||| |||||||||| |||||| ||||||| |
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| T |
48899049 |
atgaatgacgcttttcttatgaagatgttttggaatctaatcaccaagcctaatgacctatggtgtaaggttctctatagtaagtatgggaggaataaag |
48898950 |
T |
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| Q |
119 |
atcttagagtaaccatagattctcaattatatgattctcctttgtggaaagctttaacaggtatctgggatcaatttcagcaaaatattgtgtggtggct |
218 |
Q |
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||||||| ||| ||||||||||| ||| ||||||||||||||| |||||||||||||||||| ||||| |||||||| ||||||||||||||| | | |
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| T |
48898949 |
atcttagggtagccatagattctaaatcatatgattctcctttatggaaagctttaacaggttattgggaacaatttcaacaaaatattgtgtggcagtt |
48898850 |
T |
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| Q |
219 |
gagcaatggtaacaatattaatttttgggtggataaat |
256 |
Q |
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| T |
48898849 |
gggcgatggtaataatattaatttttggatggataaat |
48898812 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 151 - 213
Target Start/End: Complemental strand, 34184326 - 34184264
Alignment:
| Q |
151 |
gattctcctttgtggaaagctttaacaggtatctgggatcaatttcagcaaaatattgtgtgg |
213 |
Q |
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| T |
34184326 |
gattctcctttgtggaaagcattattaggcatttgggaaaattttcagcaaaatattgtgtgg |
34184264 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 151 - 213
Target Start/End: Complemental strand, 34204915 - 34204853
Alignment:
| Q |
151 |
gattctcctttgtggaaagctttaacaggtatctgggatcaatttcagcaaaatattgtgtgg |
213 |
Q |
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|||||||||||||||||||| ||| ||| || ||||| | ||||||||||||||||||||| |
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| T |
34204915 |
gattctcctttgtggaaagcattattaggcatttgggaaaattttcagcaaaatattgtgtgg |
34204853 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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