View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2861_high_17 (Length: 245)
Name: NF2861_high_17
Description: NF2861
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2861_high_17 |
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| [»] chr6 (3 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 227; Significance: 1e-125; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 19 - 245
Target Start/End: Complemental strand, 28143179 - 28142953
Alignment:
| Q |
19 |
tcatgattatgagtctcaatccaatccagagtctaaatccaagaagcttgaacaacttcggaatttagtttgtaaggatcagtgaatcgaatatcattca |
118 |
Q |
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| T |
28143179 |
tcatgattatgagtctcaatccaatccagagtctaaatccaagaagcttgaacaacttcggaatttagtttgtaaggatcagtgaatcgaatatcattca |
28143080 |
T |
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| Q |
119 |
tgctgcttttctgcttgaatacatgaattccacaatttgtaaggagtgacttcatcatcgagccatcacacctaacctctacacggatccattcatcttt |
218 |
Q |
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| T |
28143079 |
tgctgcttttctgcttgaatacatgaattccacaatttgtaaggagtgacttcatcatcgagccatcacacctaacctctacacggatccattcatcttt |
28142980 |
T |
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| Q |
219 |
tgaaagtgcttcatccaaattataatt |
245 |
Q |
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| T |
28142979 |
tgaaagtgcttcatccaaattataatt |
28142953 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 92 - 166
Target Start/End: Complemental strand, 28154989 - 28154915
Alignment:
| Q |
92 |
aaggatcagtgaatcgaatatcattcatgctgcttttctgcttgaatacatgaattccacaatttgtaaggagtg |
166 |
Q |
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| T |
28154989 |
aaggatcggtgaattgaatatccgccatgctacttttctgctttaatacatggattccaaaatctgtaacgagtg |
28154915 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 100 - 152
Target Start/End: Original strand, 29662694 - 29662746
Alignment:
| Q |
100 |
gtgaatcgaatatcattcatgctgcttttctgcttgaatacatgaattccaca |
152 |
Q |
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| T |
29662694 |
gtgaatcgaatatcattcatgttacttttctctttcaatacatggattccaca |
29662746 |
T |
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