View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2861_high_21 (Length: 239)
Name: NF2861_high_21
Description: NF2861
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2861_high_21 |
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Alignment Details
Target: chr3 (Bit Score: 179; Significance: 1e-96; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 8 - 226
Target Start/End: Original strand, 46085898 - 46086117
Alignment:
| Q |
8 |
gtcaatgtgtttcagtaagtcagtatnnnnnnn-tatagcaacaaattcagaaattcgggatttatttgtataacattttaccttgattgactattcatg |
106 |
Q |
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| T |
46085898 |
gtcaatgtgtttcagtaagtcagtataaaaaaaatatagcaacaaattcggaaagtcgggatttatttgtataacattttaccttgattgactattcatg |
46085997 |
T |
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| Q |
107 |
ttagtactccctgtggcacgtgacaatgaaccagttgagagatatgatgccatttcttcttttgtcttaacttcgggctcggccacaccagcaagcgtta |
206 |
Q |
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| T |
46085998 |
ttagtactccctgtggcacgtgacaatgaaccagttgagagatatgatgccatttcttcttttgtcttaacttcgggttcggccacaccagcaagcgtta |
46086097 |
T |
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| Q |
207 |
ttcctccatttgttgtttct |
226 |
Q |
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|||||||||||||||||||| |
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| T |
46086098 |
ttcctccatttgttgtttct |
46086117 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 84 - 210
Target Start/End: Complemental strand, 27956047 - 27955921
Alignment:
| Q |
84 |
tttaccttgattgactattcatgttagtactccctgtggcacgtgacaatgaaccagttgagagatatgatgccatttcttcttttgtcttaacttcggg |
183 |
Q |
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|||||||||||||||| |||||||| |||||||| ||||||||||||| ||||| |||||||| || | |||||||||||||||||| ||||| || |
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| T |
27956047 |
tttaccttgattgactgttcatgtttgtactcccagtggcacgtgacatggaaccgcgagagagataagacgacatttcttcttttgtcttgacttcagg |
27955948 |
T |
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| Q |
184 |
ctcggccacaccagcaagcgttattcc |
210 |
Q |
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| T |
27955947 |
ctctgtcacaccagccagggttattcc |
27955921 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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