View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2861_high_5 (Length: 343)
Name: NF2861_high_5
Description: NF2861
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2861_high_5 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 285; Significance: 1e-160; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 18 - 322
Target Start/End: Original strand, 18690640 - 18690944
Alignment:
| Q |
18 |
gctttcaagtagaattaattctaacttgcaacttttgattccagaattgatttatacactcaaattgatggaaggacacagttgacatgttctatttgat |
117 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18690640 |
gctttcaagtagaattgattctaacttgcaacttttgattccagaattgatttatacactcaaattgatggaaggacacagttgacatgttctatttgat |
18690739 |
T |
|
| Q |
118 |
gcagcgtgaccgacaacacaacctccgaaagcgaacatgaataatgtagttacattccctctgagactgagtaatttaacagataagatttaactgaatg |
217 |
Q |
| |
|
|||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18690740 |
gcagagtgaccgacaacacaacctccgaaagggaacatgaataatgtagttacattccctctgagactgagtaatttaacagataagatttaactgaatg |
18690839 |
T |
|
| Q |
218 |
attcatttgccattttcagtgttttggatgatgaataataattgaaaaggactaagaatataacagtaaaatttcgatgtcagtcataaatattagggca |
317 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
18690840 |
attcatttgccattttcagtgttttggatgatgaataataattgaaaaggactaagaatattacagtaaaatttcgatgtcggtcataaatattagggca |
18690939 |
T |
|
| Q |
318 |
cacac |
322 |
Q |
| |
|
||||| |
|
|
| T |
18690940 |
cacac |
18690944 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 27 - 83
Target Start/End: Complemental strand, 34027495 - 34027439
Alignment:
| Q |
27 |
tagaattaattctaacttgcaacttttgattccagaattgatttatacactcaaatt |
83 |
Q |
| |
|
||||||| ||||||||||| | |||||||||| ||||||||||| |||||||||||| |
|
|
| T |
34027495 |
tagaattgattctaacttgaagcttttgattctagaattgatttttacactcaaatt |
34027439 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 49 - 83
Target Start/End: Complemental strand, 31305903 - 31305869
Alignment:
| Q |
49 |
cttttgattccagaattgatttatacactcaaatt |
83 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||| |
|
|
| T |
31305903 |
cttttgattctagaattgatttatacactcaaatt |
31305869 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University