View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2861_high_9 (Length: 299)

Name: NF2861_high_9
Description: NF2861
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2861_high_9
NF2861_high_9
[»] chr1 (1 HSPs)
chr1 (9-299)||(46871457-46871747)


Alignment Details
Target: chr1 (Bit Score: 283; Significance: 1e-158; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 9 - 299
Target Start/End: Complemental strand, 46871747 - 46871457
Alignment:
Q  9 atgaaaattaaaatgacatgattgacgaaccacaacgacatggagaaaaggagaaggttatggagaagaagagaaatgatttatttgatcaacaagaatt 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46871747 atgaaaattaaaatgacatgattgacgaaccacaacgacatggagaaaaggagaaggttatggagaagaagagaaatgatttatttgatcaacaagaatt 46871648  T
Q  109 tgaatcccaccaattcacaactttacttgaatattttatatttaaatagcgaattaaatattttatattgaatctagaggaaacaattttagaatctcac 208  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46871647 tgaatcccaccaattcacaactttacttgactattttatatttaaatagcgaattaaatattttatattgaatctagaggaaacaattttagaatctcac 46871548  T
Q  209 aatgtagcgaattaaaatttgaaaacaaaaatgttttttcattagtttttataatcaagaaggtttaacatttagacaaacgtgtcatatt 299  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  46871547 aatgtagcgaattaaaatttgaaaacaaaaatgttttttcattagtttttataatcaagaaggtttaacatttagacaaaagtgtcatatt 46871457  T

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