View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2861_low_13 (Length: 304)
Name: NF2861_low_13
Description: NF2861
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2861_low_13 |
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Alignment Details
Target: chr5 (Bit Score: 273; Significance: 1e-152; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 10 - 290
Target Start/End: Complemental strand, 23935275 - 23934995
Alignment:
| Q |
10 |
cacagaaatagaatcaataatcaaccctttgtctaatgcaaatttaccctcttgaacttctgaccaaactttcacacctccttgtttgacactagcatat |
109 |
Q |
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| T |
23935275 |
cacagaaatagaatcaataatcaaccctttgtctaatgcaaatttaccctcttgaacttctgaccaaactttcacacctccttgtttgacactagcatat |
23935176 |
T |
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| Q |
110 |
agatcgataaaacttgaatagccatttccaagcttgatttctggaagttcatcgtcgtcaatgaaaagtgttcctttagcatctccttctgatgcgccag |
209 |
Q |
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| T |
23935175 |
agatcgataaaacttgaatagccatttccaagcttgatttctggaagttcatcgtcgtcaatgaaaagtgttcctttagcatctccttctgatgcgccag |
23935076 |
T |
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| Q |
210 |
ccgggaatgtaacaacgagcgtgaacggagtctttctcgcatcctttgagatcaatccaccttgctgcattggtagaattg |
290 |
Q |
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| T |
23935075 |
ccgggaatgtaacaatgagcgtgaacggagtctttctagcatcctttgagatcaatccaccttgctgcattggtagaattg |
23934995 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 62; Significance: 8e-27; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 47 - 288
Target Start/End: Original strand, 50109564 - 50109805
Alignment:
| Q |
47 |
gcaaatttaccctcttgaacttctgaccaaactttcacacctccttgtttgacactagcatatagatcgataaaacttgaatagccatttccaagcttga |
146 |
Q |
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||||| || |||||||| |||| |||||||||||||||| ||||| ||| ||||| |||| | ||| ||| | |||||||||||||||||||||| | |
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| T |
50109564 |
gcaaacttgccctcttggacttgtgaccaaactttcacagttccttctttcacacttgcatgaaaatcaatatacgttgaatagccatttccaagcttca |
50109663 |
T |
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| Q |
147 |
tttctggaagttcatcgtcgtcaatgaaaagtgttcctttagcatctccttctgatgcgccagccgggaatgtaacaacgagcgtgaacggagtctttct |
246 |
Q |
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| T |
50109664 |
tttctggaagttcatcatcatcaaggaataggttccctttagcttctccttcatttgcacctgctggaaatgtcacaatgaggctaaaaggtgtcattct |
50109763 |
T |
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| Q |
247 |
cgcatcctttgagatcaatccaccttgctgcattggtagaat |
288 |
Q |
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|||||||| || |||| ||||||||| |||||||||||||| |
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| T |
50109764 |
agcatccttagatatcattccaccttgttgcattggtagaat |
50109805 |
T |
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