View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2861_low_17 (Length: 257)
Name: NF2861_low_17
Description: NF2861
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2861_low_17 |
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Alignment Details
Target: chr2 (Bit Score: 239; Significance: 1e-132; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 3895288 - 3895050
Alignment:
| Q |
1 |
tttctccccagcactctctgcagcttcctttgttctatccttggcatcataagcatagtctcttatactctctccagcattctctgcagcatcctttgtt |
100 |
Q |
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| T |
3895288 |
tttctccccagcactctctgcagcttcctttgttctatccttggcatcataagcatagtctcttatactctctccagcattctctgcagcatcctttgtt |
3895189 |
T |
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| Q |
101 |
ctctcctttgcatcataagcataatctctagccttctctccagcattctcagccttctctgcagccctatttgttccttctctggctttatcccacacag |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3895188 |
ctctcctttgcatcataagcataatctctagccttctctccagcattctcagccttctctgcagccctatttgttccttctctggctttatcccacacag |
3895089 |
T |
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| Q |
201 |
aacctgctgcttcattggttctgtcttttacctcataag |
239 |
Q |
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| T |
3895088 |
aacctgctgcttcattggttctgtcttttacctcataag |
3895050 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 113 - 207
Target Start/End: Complemental strand, 3895056 - 3894962
Alignment:
| Q |
113 |
tcataagcataatctctagccttctctccagcattctcagccttctctgcagccctatttgttccttctctggctttatcccacacagaacctgc |
207 |
Q |
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| T |
3895056 |
tcataagcatagtctctagctttctctccagcattctctgccttctctgcagctctgtctgttccttctttggctttctcccacattgaacctgc |
3894962 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 24 - 150
Target Start/End: Complemental strand, 3895331 - 3895205
Alignment:
| Q |
24 |
cttcctttgttctatccttggcatcataagcatagtctcttatactctctccagcattctctgcagcatcctttgttctctcctttgcatcataagcata |
123 |
Q |
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||||||| ||||| ||||| |||||||||||||| ||||| |||| |||||| |||||||||| ||||||||||| ||||| |||||||||||||| |
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| T |
3895331 |
cttccttggttctttcctttgcatcataagcataatctctagctttctccccagcactctctgcagcttcctttgttctatccttggcatcataagcata |
3895232 |
T |
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| Q |
124 |
atctctagccttctctccagcattctc |
150 |
Q |
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||||| |||||||||||||||| |
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| T |
3895231 |
gtctcttatactctctccagcattctc |
3895205 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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