View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2861_low_2 (Length: 858)
Name: NF2861_low_2
Description: NF2861
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2861_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 491; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 491; E-Value: 0
Query Start/End: Original strand, 5 - 667
Target Start/End: Complemental strand, 14966061 - 14965410
Alignment:
| Q |
5 |
caactgccaaaaatgtactactcaaagatcattcaatatcatcatcccaaagatcgcaggtcctgtaatataccacaaaatataaactaatggtacttat |
104 |
Q |
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| T |
14966061 |
caactgccgaaagtgtactactcaaaagtcattcaatatcatcatcccaaagatcgcaggtcctgtaatataccacaaaatataaactaatggtactta- |
14965963 |
T |
|
| Q |
105 |
actttttgttctaattttaacctagaagagagagaagagcactcaactcttgcttccaataggtcagaacacaatgtctcctaccagtaaaaacaaaagc |
204 |
Q |
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| T |
14965962 |
-ctttttattctaattttaacctagaaaagagagaagagcactcaactcttgcttccaataggtcagaacacaatgtctcctactagtaaaaataaaagc |
14965864 |
T |
|
| Q |
205 |
atcaggaagagatagaagagcactcaacccttgcttctctctcatgacttatgccaagatccctcaatcgcacctccaatcatactagacaaacaattta |
304 |
Q |
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| T |
14965863 |
atcaggaagagatagaagagcactcaacccttgcttctctctcatgacttctgccaagatccctcaatcgcacctccgatcatactagacaaacaattta |
14965764 |
T |
|
| Q |
305 |
ctacatcatattattttctaatatgccatatattgtatctatgaaattacaaaacaaagctttaaccattaagttgacatctcttagatacaaataaaga |
404 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||| ||||||||||| |
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| T |
14965763 |
ctacatcatattatgttctaatatgccatatattgtatctatgaaattacaaaacaaagctctaaacattaagttgacatctcttagacacaaataaaga |
14965664 |
T |
|
| Q |
405 |
caattaaaggtaactaccatttttactaaaatgcaacattccnnnnnnnnnnnnnnnnacgatactaacttactatctaaaattgtcgagttggagactt |
504 |
Q |
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| T |
14965663 |
caattaaaggtaactaccatttttactaaaatgcaacattccttttcttttttattttacgatactaacttactatctaaaattgtcgagttggagactt |
14965564 |
T |
|
| Q |
505 |
tacacatatgtggtttcaaattaccctaaaaacacatggatataatttatctatacaagtacgcaatatnnnnnnncaaaagaaatgttaaaagcatgca |
604 |
Q |
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| T |
14965563 |
tacacaaatgtggtttcaaattaccctaaaaacacatggatataatttatctatacaagtacgcaatataaaaaaacaaaagaaatgtta---------a |
14965473 |
T |
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| Q |
605 |
aagcatgctataataagcatttgtaacaaataaagaagtgtgttggcctaaacacgagctaat |
667 |
Q |
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| T |
14965472 |
aagcatgctataataagcatttgtaacaaataaagaagtgtgttggcctaaacacgagctaat |
14965410 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 133; E-Value: 1e-68
Query Start/End: Original strand, 687 - 842
Target Start/End: Complemental strand, 14965420 - 14965267
Alignment:
| Q |
687 |
cacgagctaattaatgaagaaatttgattcaaatggctagctaatctcagaattacacaatcgtcaacatgatagattgttcatcacgtcattttctcta |
786 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
14965420 |
cacgagctaattaatgaagaaatttgattcaaatgactagctaatctcagaattacacaatcgtcaacatgatagattgttcatcacgtcgttttctcta |
14965321 |
T |
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| Q |
787 |
agtagtttcaaatgtgtgcatttgtgaaattctcacactattttattggagattat |
842 |
Q |
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| T |
14965320 |
agtagtttcaaatgtgtgcatttatgaaattct--cactattttattggagattat |
14965267 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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