View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2861_low_25 (Length: 239)

Name: NF2861_low_25
Description: NF2861
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2861_low_25
NF2861_low_25
[»] chr3 (7 HSPs)
chr3 (37-108)||(5307616-5307687)
chr3 (18-85)||(5307684-5307751)
chr3 (186-237)||(5307481-5307537)
chr3 (84-116)||(15332964-15332996)
chr3 (84-116)||(27813446-27813478)
chr3 (84-116)||(41252921-41252953)
chr3 (84-116)||(41751568-41751600)
[»] chr7 (3 HSPs)
chr7 (21-116)||(27045566-27045663)
chr7 (84-116)||(37467465-37467497)
chr7 (84-116)||(47525994-47526026)
[»] chr6 (2 HSPs)
chr6 (82-116)||(5495319-5495353)
chr6 (21-116)||(31869715-31869812)
[»] chr5 (4 HSPs)
chr5 (65-116)||(32017264-32017317)
chr5 (84-116)||(3422368-3422400)
chr5 (84-116)||(12359979-12360011)
chr5 (84-116)||(27579588-27579620)
[»] chr4 (4 HSPs)
chr4 (85-115)||(51355197-51355227)
chr4 (84-116)||(2571040-2571072)
chr4 (84-116)||(7614687-7614719)
chr4 (84-116)||(52227097-52227129)
[»] scaffold0595 (1 HSPs)
scaffold0595 (84-116)||(4020-4052)
[»] scaffold0225 (1 HSPs)
scaffold0225 (84-116)||(8991-9023)
[»] scaffold0029 (1 HSPs)
scaffold0029 (84-116)||(138188-138220)
[»] chr2 (5 HSPs)
chr2 (84-116)||(11931763-11931795)
chr2 (84-116)||(24252032-24252064)
chr2 (84-116)||(38839145-38839177)
chr2 (84-116)||(42133824-42133856)
chr2 (84-116)||(43444698-43444730)
[»] chr1 (1 HSPs)
chr1 (84-116)||(22575745-22575777)


Alignment Details
Target: chr3 (Bit Score: 64; Significance: 4e-28; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 37 - 108
Target Start/End: Complemental strand, 5307687 - 5307616
Alignment:
Q  37 tgttgcaattaaacaaagcacacttttgacataaattactttgattgttttttagctaatatataaatacaa 108  Q
    |||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5307687 tgttgcaattaatcaatgcacacttttgacataaattactttgattgttttttagctaatatataaatacaa 5307616  T

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Target: chr3; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 18 - 85
Target Start/End: Complemental strand, 5307751 - 5307684
Alignment:
Q  18 ctttccgttccaaaatacatgttgcaattaaacaaagcacacttttgacataaattactttgattgtt 85  Q
    |||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  5307751 ctttccgttcgaaaatacatgttgcaattaaacaatgcacacttttgacataaattactttgattgtt 5307684  T

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Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 186 - 237
Target Start/End: Complemental strand, 5307537 - 5307481
Alignment:
Q  186 attattaaacatatcaatgattaaaattgtg-----aaatatgtgaaatagttgatt 237  Q
    |||||||||||||||||||||||||||||||     | |||||||||||||||||||    
T  5307537 attattaaacatatcaatgattaaaattgtgcatttatatatgtgaaatagttgatt 5307481  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 84 - 116
Target Start/End: Complemental strand, 15332996 - 15332964
Alignment:
Q  84 ttttttagctaatatataaatacaaatgttagc 116  Q
    ||||||| |||||||||||||||||||||||||    
T  15332996 ttttttaactaatatataaatacaaatgttagc 15332964  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 84 - 116
Target Start/End: Complemental strand, 27813478 - 27813446
Alignment:
Q  84 ttttttagctaatatataaatacaaatgttagc 116  Q
    ||||||| |||||||||||||||||||||||||    
T  27813478 ttttttaactaatatataaatacaaatgttagc 27813446  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 84 - 116
Target Start/End: Complemental strand, 41252953 - 41252921
Alignment:
Q  84 ttttttagctaatatataaatacaaatgttagc 116  Q
    ||||||| |||||||||||||||||||||||||    
T  41252953 ttttttaactaatatataaatacaaatgttagc 41252921  T

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Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 84 - 116
Target Start/End: Complemental strand, 41751600 - 41751568
Alignment:
Q  84 ttttttagctaatatataaatacaaatgttagc 116  Q
    ||||||| |||||||||||||||||||||||||    
T  41751600 ttttttaactaatatataaatacaaatgttagc 41751568  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 21 - 116
Target Start/End: Complemental strand, 27045663 - 27045566
Alignment:
Q  21 tccgttccaaaatacatgttgcaattaaacaaagcacacttttgacataaattactttgat--tgttttttagctaatatataaatacaaatgttagc 116  Q
    |||||| |||||||||||||||||||  |||| | | ||| || ||||   |||||||||   | ||||||| |||||||||||||||||||||||||    
T  27045663 tccgtttcaaaatacatgttgcaattttacaatgtatactattcacatggtttactttgaccatattttttaactaatatataaatacaaatgttagc 27045566  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 84 - 116
Target Start/End: Complemental strand, 37467497 - 37467465
Alignment:
Q  84 ttttttagctaatatataaatacaaatgttagc 116  Q
    ||||||| |||||||||||||||||||||||||    
T  37467497 ttttttaactaatatataaatacaaatgttagc 37467465  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 84 - 116
Target Start/End: Complemental strand, 47526026 - 47525994
Alignment:
Q  84 ttttttagctaatatataaatacaaatgttagc 116  Q
    ||||||| |||||||||||||||||||||||||    
T  47526026 ttttttaactaatatataaatacaaatgttagc 47525994  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 82 - 116
Target Start/End: Original strand, 5495319 - 5495353
Alignment:
Q  82 tgttttttagctaatatataaatacaaatgttagc 116  Q
    ||||||||| |||||||||||||||||||||||||    
T  5495319 tgttttttaactaatatataaatacaaatgttagc 5495353  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 21 - 116
Target Start/End: Original strand, 31869715 - 31869812
Alignment:
Q  21 tccgttccaaaatacatgttgcaattaaacaaagcacacttttgacataaattactttgat--tgttttttagctaatatataaatacaaatgttagc 116  Q
    |||||| |||||||||||| || |||  |||| | ||||| ||  ||||| |||||||||   | ||||||| |||||||||||||||||||||||||    
T  31869715 tccgtttcaaaatacatgtcgcgattttacaatgtacactattcccataatttactttgaccattttttttaactaatatataaatacaaatgttagc 31869812  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 65 - 116
Target Start/End: Original strand, 32017264 - 32017317
Alignment:
Q  65 acataaattactttgat--tgttttttagctaatatataaatacaaatgttagc 116  Q
    |||||| ||||||||||  | ||||||| |||||||||||||||||||||||||    
T  32017264 acataacttactttgatcatattttttaactaatatataaatacaaatgttagc 32017317  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 84 - 116
Target Start/End: Complemental strand, 3422400 - 3422368
Alignment:
Q  84 ttttttagctaatatataaatacaaatgttagc 116  Q
    ||||||| |||||||||||||||||||||||||    
T  3422400 ttttttaactaatatataaatacaaatgttagc 3422368  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 84 - 116
Target Start/End: Complemental strand, 12360011 - 12359979
Alignment:
Q  84 ttttttagctaatatataaatacaaatgttagc 116  Q
    ||||||| |||||||||||||||||||||||||    
T  12360011 ttttttaactaatatataaatacaaatgttagc 12359979  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 84 - 116
Target Start/End: Complemental strand, 27579620 - 27579588
Alignment:
Q  84 ttttttagctaatatataaatacaaatgttagc 116  Q
    ||||||| |||||||||||||||||||||||||    
T  27579620 ttttttaactaatatataaatacaaatgttagc 27579588  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 85 - 115
Target Start/End: Complemental strand, 51355227 - 51355197
Alignment:
Q  85 tttttagctaatatataaatacaaatgttag 115  Q
    |||||||||||||||||||||||||||||||    
T  51355227 tttttagctaatatataaatacaaatgttag 51355197  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 84 - 116
Target Start/End: Complemental strand, 2571072 - 2571040
Alignment:
Q  84 ttttttagctaatatataaatacaaatgttagc 116  Q
    ||||||| |||||||||||||||||||||||||    
T  2571072 ttttttaactaatatataaatacaaatgttagc 2571040  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 84 - 116
Target Start/End: Original strand, 7614687 - 7614719
Alignment:
Q  84 ttttttagctaatatataaatacaaatgttagc 116  Q
    ||||||| |||||||||||||||||||||||||    
T  7614687 ttttttaactaatatataaatacaaatgttagc 7614719  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 84 - 116
Target Start/End: Original strand, 52227097 - 52227129
Alignment:
Q  84 ttttttagctaatatataaatacaaatgttagc 116  Q
    ||||||| |||||||||||||||||||||||||    
T  52227097 ttttttatctaatatataaatacaaatgttagc 52227129  T

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Target: scaffold0595 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0595
Description:

Target: scaffold0595; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 84 - 116
Target Start/End: Original strand, 4020 - 4052
Alignment:
Q  84 ttttttagctaatatataaatacaaatgttagc 116  Q
    ||||||| |||||||||||||||||||||||||    
T  4020 ttttttaactaatatataaatacaaatgttagc 4052  T

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Target: scaffold0225 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0225
Description:

Target: scaffold0225; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 84 - 116
Target Start/End: Complemental strand, 9023 - 8991
Alignment:
Q  84 ttttttagctaatatataaatacaaatgttagc 116  Q
    ||||||| |||||||||||||||||||||||||    
T  9023 ttttttaactaatatataaatacaaatgttagc 8991  T

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Target: scaffold0029 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0029
Description:

Target: scaffold0029; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 84 - 116
Target Start/End: Complemental strand, 138220 - 138188
Alignment:
Q  84 ttttttagctaatatataaatacaaatgttagc 116  Q
    ||||||| |||||||||||||||||||||||||    
T  138220 ttttttaactaatatataaatacaaatgttagc 138188  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 84 - 116
Target Start/End: Original strand, 11931763 - 11931795
Alignment:
Q  84 ttttttagctaatatataaatacaaatgttagc 116  Q
    ||||||| |||||||||||||||||||||||||    
T  11931763 ttttttaactaatatataaatacaaatgttagc 11931795  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 84 - 116
Target Start/End: Original strand, 24252032 - 24252064
Alignment:
Q  84 ttttttagctaatatataaatacaaatgttagc 116  Q
    ||||||| |||||||||||||||||||||||||    
T  24252032 ttttttaactaatatataaatacaaatgttagc 24252064  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 84 - 116
Target Start/End: Original strand, 38839145 - 38839177
Alignment:
Q  84 ttttttagctaatatataaatacaaatgttagc 116  Q
    ||||||| |||||||||||||||||||||||||    
T  38839145 ttttttaactaatatataaatacaaatgttagc 38839177  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 84 - 116
Target Start/End: Original strand, 42133824 - 42133856
Alignment:
Q  84 ttttttagctaatatataaatacaaatgttagc 116  Q
    ||||||| |||||||||||||||||||||||||    
T  42133824 ttttttaactaatatataaatacaaatgttagc 42133856  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 84 - 116
Target Start/End: Complemental strand, 43444730 - 43444698
Alignment:
Q  84 ttttttagctaatatataaatacaaatgttagc 116  Q
    ||||||| |||||||||||||||||||||||||    
T  43444730 ttttttaactaatatataaatacaaatgttagc 43444698  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 84 - 116
Target Start/End: Complemental strand, 22575777 - 22575745
Alignment:
Q  84 ttttttagctaatatataaatacaaatgttagc 116  Q
    ||||||| |||||||||||||||||||||||||    
T  22575777 ttttttaactaatatataaatacaaatgttagc 22575745  T

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