View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2861_low_3 (Length: 677)

Name: NF2861_low_3
Description: NF2861
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2861_low_3
NF2861_low_3
[»] chr7 (15 HSPs)
chr7 (296-515)||(16968483-16968702)
chr7 (1-251)||(16968741-16969015)
chr7 (512-663)||(16968251-16968402)
chr7 (327-512)||(16992132-16992317)
chr7 (519-598)||(16991962-16992041)
chr7 (140-233)||(10601663-10601756)
chr7 (323-463)||(17007925-17008050)
chr7 (29-120)||(16978136-16978227)
chr7 (143-207)||(16824362-16824426)
chr7 (327-421)||(16977814-16977908)
chr7 (616-661)||(16977169-16977214)
chr7 (327-394)||(10601817-10601884)
chr7 (358-415)||(16992331-16992388)
chr7 (75-132)||(10601589-10601646)
chr7 (168-233)||(17008113-17008178)
[»] chr4 (4 HSPs)
chr4 (398-515)||(35263168-35263285)
chr4 (521-606)||(35263339-35263424)
chr4 (327-414)||(35262998-35263085)
chr4 (140-247)||(35262694-35262804)


Alignment Details
Target: chr7 (Bit Score: 184; Significance: 3e-99; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 184; E-Value: 3e-99
Query Start/End: Original strand, 296 - 515
Target Start/End: Complemental strand, 16968702 - 16968483
Alignment:
Q  296 aacgggtgggccgaaatactattctgcggtggaggagttggtgagagaggtaatggatagacaaagtggaatttctgagaggaataatgagaaggtgaat 395  Q
    |||||||| |||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||  ||||||||    
T  16968702 aacgggtgagccgaaatactattatgcggtggaggagctggtgagagaggtaatggatagacaaagtggaatttctgagaggaatgatgaagaggtgaat 16968603  T
Q  396 gttgagaatagtccatcttccacaaatattgatgagttggagcatgcagatcatgctagtgtttcctcctgtaccattgagaagaagggtagttcttctt 495  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16968602 gttgagaatagtccatcttccacaaatattgatgagttggagcatgaagatcatgctagtgtttcctcctgtaccattgagaagaagggtagttcttctt 16968503  T
Q  496 ctaaaccgaatggagtatca 515  Q
    |||| | |||||||||||||    
T  16968502 ctaagctgaatggagtatca 16968483  T

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Target: chr7; HSP #2
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 1 - 251
Target Start/End: Complemental strand, 16969015 - 16968741
Alignment:
Q  1 taaaaatggatgctgatgatgatgctggtgatgttaaagacggagtaaagagtgatgaaattggaggaaacgaagagtttgatgataaagataaaaactt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||  |||||| ||||||||||||||| |||    
T  16969015 taaaaatggatgctgatgatgatgctggtgatgttaaagacggagtaaagagtgatgaagttggagggaacggtgagttttatgataaagataaaagctt 16968916  T
Q  101 tgttgatttgggtgattctga------tgatagtgatg------------gtga------tagttctgatgaaagtgaagaaaatgagaccagtgatgag 176  Q
    | |||||||||||||||||||      |||||||||||            ||||      | |||| |||||||||||||||||||||||||||||||||    
T  16968915 tattgatttgggtgattctgataagagtgatagtgatgattctgatgaaagtgaggattctggttcagatgaaagtgaagaaaatgagaccagtgatgag 16968816  T
Q  177 gattttagggttgatgagatgaatgagatttttggcaatgatgaagacaattcttctagttcctcttatgtgaat 251  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||    
T  16968815 gattttagggttgatgagatgaatgagatttttggcaatgatgatgacaattcttctagttcctcttatttgaat 16968741  T

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Target: chr7; HSP #3
Raw Score: 123; E-Value: 8e-63
Query Start/End: Original strand, 512 - 663
Target Start/End: Complemental strand, 16968402 - 16968251
Alignment:
Q  512 atcaaagaacaaatccaaggaaaatgttggtgattctgatcgaggaaaatatcaatttgttaaaggcttagatgttggaggaatttcatcagttcnnnnn 611  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||         
T  16968402 atcaaaaaacaaatccaaggaaaatgttggtgattctgatcgaggaaaatatcaatttgttaaaggcttagatgttggaggaatttcatcagttcaaaaa 16968303  T
Q  612 nngaaagaagagatgaagaatgaatcaattgtgttggagttcaagtatgatg 663  Q
      | ||||||||||||||||||||||||||||||||||||||||||||||||    
T  16968302 aagcaagaagagatgaagaatgaatcaattgtgttggagttcaagtatgatg 16968251  T

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Target: chr7; HSP #4
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 327 - 512
Target Start/End: Complemental strand, 16992317 - 16992132
Alignment:
Q  327 gaggagttggtgagagaggtaatggatagacaaagtggaatttctgagaggaataatgagaaggtgaatgttgagaatagtccatcttccacaaatattg 426  Q
    |||||| ||||||||||||  | ||||| | ||||| ||||||||||||||||   |||| ||||  |   |||||  | ||||||||||||||||||||    
T  16992317 gaggagatggtgagagaggggaaggataaaaaaagtagaatttctgagaggaaatgtgaggaggtagagaatgagagcaatccatcttccacaaatattg 16992218  T
Q  427 atgagttggagcatgcagatcatgctagtgtttcctcctgtaccattgagaagaagggtagttcttcttctaaaccgaatggagta 512  Q
    ||||||||||||| || || ||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||    
T  16992217 atgagttggagcaagccgaccatgctagtgtttcctcctgtaccattgagaagaagggtagttcttcttctaagctgaatggagta 16992132  T

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Target: chr7; HSP #5
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 519 - 598
Target Start/End: Complemental strand, 16992041 - 16991962
Alignment:
Q  519 aacaaatccaaggaaaatgttggtgattctgatcgaggaaaatatcaatttgttaaaggcttagatgttggaggaatttc 598  Q
    ||||||||||||||||||||||| || |||||| |||||||| |||||||||||||||||||||||||||||||| ||||    
T  16992041 aacaaatccaaggaaaatgttggcgactctgatggaggaaaagatcaatttgttaaaggcttagatgttggaggagtttc 16991962  T

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Target: chr7; HSP #6
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 140 - 233
Target Start/End: Original strand, 10601663 - 10601756
Alignment:
Q  140 ttctgatgaaagtgaagaaaatgagaccagtgatgaggattttagggttgatgagatgaatgagatttttggcaatgatgaagacaattcttct 233  Q
    ||||||||||||||||||||||||||| || |||||||||||||| ||||||||| |||||||||||| || ||||||||| || | |||||||    
T  10601663 ttctgatgaaagtgaagaaaatgagactagcgatgaggattttagagttgatgagctgaatgagatttctgacaatgatgacgatagttcttct 10601756  T

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Target: chr7; HSP #7
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 323 - 463
Target Start/End: Complemental strand, 17008050 - 17007925
Alignment:
Q  323 ggtggaggagttggtgagagaggtaatggatagacaaagtggaatttctgagaggaataatgagaaggtgaatgttgagaatagtccatcttccacaaat 422  Q
    ||||||| ||||| | |||||||| |||||||||||| ||||||||||||||| ||||||||||||               ||||||||||||||||| |    
T  17008050 ggtggagaagttgattagagaggtgatggatagacaatgtggaatttctgagaagaataatgagaa---------------tagtccatcttccacaagt 17007966  T
Q  423 attgatgagttggagcatgcagatcatgctagtgtttcctc 463  Q
    | |||||||||||| ||||||||||||||||||||||||||    
T  17007965 actgatgagttggaacatgcagatcatgctagtgtttcctc 17007925  T

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Target: chr7; HSP #8
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 29 - 120
Target Start/End: Complemental strand, 16978227 - 16978136
Alignment:
Q  29 tgatgttaaagacggagtaaagagtgatgaaattggaggaaacgaagagtttgatgataaagataaaaactttgttgatttgggtgattctg 120  Q
    |||||||||||| | |||||||| |||||||| |  |||||| |  ||||||||||||||||||||||||||||||||||||| ||||||||    
T  16978227 tgatgttaaagaggaagtaaagactgatgaaagtaaaggaaatggtgagtttgatgataaagataaaaactttgttgatttggatgattctg 16978136  T

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Target: chr7; HSP #9
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 143 - 207
Target Start/End: Complemental strand, 16824426 - 16824362
Alignment:
Q  143 tgatgaaagtgaagaaaatgagaccagtgatgaggattttagggttgatgagatgaatgagattt 207  Q
    |||||||||||||||||||||||| |||||||||||||||| ||| |||||| ||||||||||||    
T  16824426 tgatgaaagtgaagaaaatgagactagtgatgaggattttatggtggatgaggtgaatgagattt 16824362  T

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Target: chr7; HSP #10
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 327 - 421
Target Start/End: Complemental strand, 16977908 - 16977814
Alignment:
Q  327 gaggagttggtgagagaggtaatggatagacaaagtggaatttctgagaggaataatgagaaggtgaatgttgagaatagtccatcttccacaaa 421  Q
    ||||| ||||| |||||||| ||||||| |||||||||||||||||    |||| ||||| || | || ||||| ||||||||||||||||||||    
T  16977908 gaggatttggttagagaggtgatggataaacaaagtggaatttctggattgaatgatgaggagataaacgttgaaaatagtccatcttccacaaa 16977814  T

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Target: chr7; HSP #11
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 616 - 661
Target Start/End: Complemental strand, 16977214 - 16977169
Alignment:
Q  616 aagaagagatgaagaatgaatcaattgtgttggagttcaagtatga 661  Q
    ||||||||||||||||||||||| ||||||| ||||||||||||||    
T  16977214 aagaagagatgaagaatgaatcagttgtgttcgagttcaagtatga 16977169  T

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Target: chr7; HSP #12
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 327 - 394
Target Start/End: Original strand, 10601817 - 10601884
Alignment:
Q  327 gaggagttggtgagagaggtaatggatagacaaagtggaatttctgagaggaataatgagaaggtgaa 394  Q
    ||||| ||| ||||||||| ||| |||||||| | |||||||||||||| |||||||||| |||||||    
T  10601817 gaggaattgttgagagaggcaattgatagacacaatggaatttctgagatgaataatgaggaggtgaa 10601884  T

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Target: chr7; HSP #13
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 358 - 415
Target Start/End: Complemental strand, 16992388 - 16992331
Alignment:
Q  358 aaagtggaatttctgagaggaataatgagaaggtgaatgttgagaatagtccatcttc 415  Q
    |||| |||||||||||||| ||||||||| | || ||||||||||||||| |||||||    
T  16992388 aaaggggaatttctgagagtaataatgaggaagtaaatgttgagaatagttcatcttc 16992331  T

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Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 75 - 132
Target Start/End: Original strand, 10601589 - 10601646
Alignment:
Q  75 gagtttgatgataaagataaaaactttgttgatttgggtgattctgatgatagtgatg 132  Q
    ||||||| ||||||||||||    ||||||||||||| |||||||||||| |||||||    
T  10601589 gagtttgctgataaagataatttttttgttgatttggatgattctgatgagagtgatg 10601646  T

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Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 168 - 233
Target Start/End: Complemental strand, 17008178 - 17008113
Alignment:
Q  168 agtgatgaggattttagggttgatgagatgaatgagatttttggcaatgatgaagacaattcttct 233  Q
    |||||||| |||||||  ||||| ||| |||||||||||| || ||||||||| |||| |||||||    
T  17008178 agtgatgaagattttaaagttgaggagctgaatgagatttctgacaatgatgatgacagttcttct 17008113  T

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Target: chr4 (Bit Score: 102; Significance: 3e-50; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 102; E-Value: 3e-50
Query Start/End: Original strand, 398 - 515
Target Start/End: Original strand, 35263168 - 35263285
Alignment:
Q  398 tgagaatagtccatcttccacaaatattgatgagttggagcatgcagatcatgctagtgtttcctcctgtaccattgagaagaagggtagttcttcttct 497  Q
    |||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  35263168 tgagaatgttccatcttccacaaatattgatgagttggagcatgcagatcatgctagtgtttcctcctgtatcattgagaagaagggtagttcttcttct 35263267  T
Q  498 aaaccgaatggagtatca 515  Q
    |||| |||||||||||||    
T  35263268 aaactgaatggagtatca 35263285  T

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Target: chr4; HSP #2
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 521 - 606
Target Start/End: Original strand, 35263339 - 35263424
Alignment:
Q  521 caaatccaaggaaaatgttggtgattctgatcgaggaaaatatcaatttgttaaaggcttagatgttggaggaatttcatcagttc 606  Q
    ||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||| |||||||    
T  35263339 caaatccaaagaaaatgttggtgattctgatcgaggaaaagatcaatttgttaaaggcttagatgttggaggagtttcttcagttc 35263424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 327 - 414
Target Start/End: Original strand, 35262998 - 35263085
Alignment:
Q  327 gaggagttggtgagagaggtaatggatagacaaagtggaatttctgagaggaataatgagaaggtgaatgttgagaatagtccatctt 414  Q
    |||||| ||||||||||||  | ||||| | | ||||||||||||||||||||||||||||| || ||||||||||||||||||||||    
T  35262998 gaggagatggtgagagaggggaaggataaaaagagtggaatttctgagaggaataatgagaaagtaaatgttgagaatagtccatctt 35263085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 140 - 247
Target Start/End: Original strand, 35262694 - 35262804
Alignment:
Q  140 ttctgatgaaagtgaagaaaatgagaccagtgatgaggattttagggttgatgagatgaatgagatttttggca---atgatgaagacaattcttctagt 236  Q
    ||||||||| ||||||||||||||  | |||||||| ||||||   ||||||||  ||||||| ||||  | ||   ||||||| |||| |||||||||     
T  35262694 ttctgatgagagtgaagaaaatgactctagtgatgaagattttgcagttgatgaactgaatgaaatttcagacaatcatgatgatgacagttcttctagc 35262793  T
Q  237 tcctcttatgt 247  Q
    |||||||||||    
T  35262794 tcctcttatgt 35262804  T

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