View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2861_low_4 (Length: 608)
Name: NF2861_low_4
Description: NF2861
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2861_low_4 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 479; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 479; E-Value: 0
Query Start/End: Original strand, 17 - 597
Target Start/End: Original strand, 12963084 - 12963667
Alignment:
| Q |
17 |
atcatctatgtaaccgatccacttgatacaataaaactcgactgttgttatttcctttnnnnnnnnnnnnnnnnn---gagaaaataagaagtgataaga |
113 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||| |||||||||||||||| ||||| |
|
|
| T |
12963084 |
atcatctatgtaaccgatccacttgatacaataaaactcgattgttgttattttcttttttattatatatatatatatgagaaaataagaagtggtaaga |
12963183 |
T |
|
| Q |
114 |
tgaaaagtgtaaaacgagagagggatcaaattgagctaaattccacaatcaaatggtcatggaattgtgatgggttggactaattgagtcactaaaaatt |
213 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||| |
|
|
| T |
12963184 |
tgaaaagtgtaaaacgagagagggatcaaattgagctaaattccacaatcaaatggtcatggaattgtgatgggttgtactaaatgagtcactaaaaatt |
12963283 |
T |
|
| Q |
214 |
cttctaaacaaaatttattaatatattaattaactcctttttaaagttttggtattacatgctattgacatactagtggtttggccaaatttgtgacaat |
313 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12963284 |
cttctaaacaaaattgattaatatattaattaactcctttttaaagttttggtattacatgctattgacatactagtggtttggccaaatttgtgacaat |
12963383 |
T |
|
| Q |
314 |
gaaagggacagtgatatttgtcttgatacaaaagattgatgtcgatgcttgcatgagggtgaagtgtatattatttgtaattatactcaacatgcatttg |
413 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
12963384 |
gaaagggacagtgatatctgtcttgatacaaaagattgatgttgatgcttgcatgagggtgaagtgtgtattatttgtaattatactcaacatgcatttg |
12963483 |
T |
|
| Q |
414 |
tatcaacattcaaatgaaaatgagattattgtcgtattaacaacatcattgatttgttcattatcgtatattaatgtatgctccactgtattttgtcctc |
513 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12963484 |
tatcaacattcaaatgagaatgagattattgtcgtattaacaacatcattgatttgttcattatcgtatattaatgtatgctccactgtattttgtcctc |
12963583 |
T |
|
| Q |
514 |
tactttcccataacctgttcatgttctgcaccgaagatataagcaatgttataccatcattttattctacgacattcttttcat |
597 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12963584 |
tactttcccataacctgttcatgttctgcaccgaagatataagcaatgttataccatcattttattctacgacattcttttcat |
12963667 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University