View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2861_low_5 (Length: 518)

Name: NF2861_low_5
Description: NF2861
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2861_low_5
NF2861_low_5
[»] chr8 (9 HSPs)
chr8 (108-501)||(29118424-29118814)
chr8 (345-448)||(6223488-6223591)
chr8 (345-448)||(19369822-19369923)
chr8 (345-448)||(19448535-19448636)
chr8 (345-448)||(19532440-19532541)
chr8 (377-441)||(5650863-5650927)
chr8 (345-440)||(5528830-5528923)
chr8 (410-448)||(18767067-18767105)
chr8 (371-448)||(14997733-14997810)
[»] chr1 (6 HSPs)
chr1 (347-448)||(51758842-51758941)
chr1 (371-448)||(39368550-39368627)
chr1 (371-442)||(18308260-18308331)
chr1 (410-448)||(897605-897643)
chr1 (273-338)||(28636882-28636948)
chr1 (410-447)||(28637054-28637091)
[»] chr3 (2 HSPs)
chr3 (345-448)||(28745062-28745164)
chr3 (345-447)||(27259366-27259467)
[»] chr5 (5 HSPs)
chr5 (346-442)||(19985083-19985178)
chr5 (345-448)||(17037630-17037731)
chr5 (273-336)||(31571008-31571072)
chr5 (345-441)||(5078983-5079077)
chr5 (273-336)||(30786246-30786310)
[»] scaffold0069 (1 HSPs)
scaffold0069 (345-448)||(40610-40711)
[»] chr7 (5 HSPs)
chr7 (273-336)||(26619160-26619223)
chr7 (376-442)||(26619021-26619087)
chr7 (345-442)||(26621008-26621104)
chr7 (345-441)||(9242403-9242497)
chr7 (275-336)||(30089716-30089778)
[»] chr6 (5 HSPs)
chr6 (345-448)||(17719635-17719736)
chr6 (345-441)||(12591920-12592014)
chr6 (345-448)||(14669258-14669359)
chr6 (371-440)||(1942681-1942750)
chr6 (272-339)||(23904406-23904474)
[»] chr4 (3 HSPs)
chr4 (345-448)||(1152131-1152232)
chr4 (345-448)||(1684864-1684965)
chr4 (273-336)||(4923690-4923754)
[»] scaffold0684 (1 HSPs)
scaffold0684 (345-448)||(659-760)
[»] chr2 (3 HSPs)
chr2 (371-448)||(24479264-24479341)
chr2 (278-338)||(27151287-27151347)
chr2 (345-441)||(31342635-31342729)


Alignment Details
Target: chr8 (Bit Score: 334; Significance: 0; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 108 - 501
Target Start/End: Complemental strand, 29118814 - 29118424
Alignment:
Q  108 tatgcacacatatatcttgttattttaagttttaacttcatttgtctcttccatttcagttagacattcttctatatttatatgcaataatcatatcaaa 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29118814 tatgcacacatatatcttgttattttaagttttaacttcatttgtctcttccatttcagttagacattcttctatatttatatgcaataatcatatcaaa 29118715  T
Q  208 tccatttatcctttcctaaaccaaaaccaataggaacgtacatatatgattcaaattactaaaggcactacaatataattgagatctagtaacacttaaa 307  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||    
T  29118714 tccatttatcctttcctaaaccaaaaccaatgggaacgtacatatatga-tccaattactaaaggcactacaatataattgagatctagtaacacttaaa 29118616  T
Q  308 attgttgctaaaccaagaagaatgttactaaacacactgttacaaaagagttttaagtcacactttacagtattatctgtaacattcaaaacgtgtttca 407  Q
    ||||||||||||||||||||||||||||||||||| ||  |||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||    
T  29118615 attgttgctaaaccaagaagaatgttactaaacacgct-atacaaaagag-tttaagtcacactttacagtattatctgtaacattcaaaacgtgttgca 29118518  T
Q  408 atatgttacatcattgtaacattttttgtatcaccagtaacttttgtatcagaaattgattcatgtaattttcttcattgaacttcccatgaac 501  Q
    | ||||||||||||||||||| ||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  29118517 aaatgttacatcattgtaacactttttgtatcaccggtaactttagtatcagaaattgattcatgtaattttcttcattgaacttcccatgaac 29118424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 345 - 448
Target Start/End: Original strand, 6223488 - 6223591
Alignment:
Q  345 tgttacaaaagagttttaagtcacactttacagtattatctgtaacattcaaaac-gtgtttcaatatgttacatcattgtaacattttttgtatcacca 443  Q
    |||||| ||||||||||| || |||||||| | |||||| ||||||||||||||  ||||  ||| ||||||||| ||||||||| |||||| |||||||    
T  6223488 tgttactaaagagtttta-gttacactttataatattatatgtaacattcaaaaaagtgtcgcaaaatgttacattattgtaacactttttgaatcacca 6223586  T
Q  444 gtaac 448  Q
    |||||    
T  6223587 gtaac 6223591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 345 - 448
Target Start/End: Complemental strand, 19369923 - 19369822
Alignment:
Q  345 tgttacaaaagagttttaagtcacactttacagtattatctgtaacattcaaaacgtgtttcaatatgttacatcattgtaacattttttgtatcaccag 444  Q
    |||||| ||||||||||| || ||| |||| |||||||||||||||| | |||| ||||  ||| ||||||||| ||||||||| |||||||||||| ||    
T  19369923 tgttactaaagagtttta-gttacattttatagtattatctgtaacaattaaaaagtgtcgcaa-atgttacattattgtaacactttttgtatcactag 19369826  T
Q  445 taac 448  Q
    ||||    
T  19369825 taac 19369822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 345 - 448
Target Start/End: Original strand, 19448535 - 19448636
Alignment:
Q  345 tgttacaaaagagttttaagtcacactttacagtattatctgtaacattcaaaacgtgtttcaatatgttacatcattgtaacattttttgtatcaccag 444  Q
    |||||| ||||||||||| || | | |||| |||||||||||||||| | |||| ||||  ||| ||||||||| ||||||||| |||||||||||| ||    
T  19448535 tgttactaaagagtttta-gttatattttatagtattatctgtaacaattaaaaagtgtcgcaa-atgttacattattgtaacactttttgtatcactag 19448632  T
Q  445 taac 448  Q
    ||||    
T  19448633 taac 19448636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 345 - 448
Target Start/End: Complemental strand, 19532541 - 19532440
Alignment:
Q  345 tgttacaaaagagttttaagtcacactttacagtattatctgtaacattcaaaacgtgtttcaatatgttacatcattgtaacattttttgtatcaccag 444  Q
    |||||| ||||||||||| || | | |||| |||||||||||||||| | |||| ||||  ||| ||||||||| ||||||||| |||||||||||| ||    
T  19532541 tgttactaaagagtttta-gttatattttatagtattatctgtaacaattaaaaagtgtcgcaa-atgttacattattgtaacactttttgtatcactag 19532444  T
Q  445 taac 448  Q
    ||||    
T  19532443 taac 19532440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 377 - 441
Target Start/End: Complemental strand, 5650927 - 5650863
Alignment:
Q  377 gtattatctgtaacattcaaaacgtgtttcaatatgttacatcattgtaacattttttgtatcac 441  Q
    ||||||||| |||||||||||  ||||  ||| ||||||||| ||||||||| ||||||||||||    
T  5650927 gtattatctataacattcaaatagtgtcacaaaatgttacattattgtaacactttttgtatcac 5650863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 345 - 440
Target Start/End: Original strand, 5528830 - 5528923
Alignment:
Q  345 tgttacaaaagagttttaagtcacactttacagtattatctgtaacattcaaaacgtgtttcaatatgttacatcattgtaacattttttgtatca 440  Q
    |||||| ||||||||||| || ||| ||||||||||||||||||||| | |||| ||||  ||| || | |||| ||||||||| |||||||||||    
T  5528830 tgttactaaagagtttta-gttacattttacagtattatctgtaacagttaaaaagtgtcgcaa-atataacattattgtaacactttttgtatca 5528923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 410 - 448
Target Start/End: Original strand, 18767067 - 18767105
Alignment:
Q  410 atgttacatcattgtaacattttttgtatcaccagtaac 448  Q
    ||||||||| |||||||||||||||||||||| ||||||    
T  18767067 atgttacattattgtaacattttttgtatcactagtaac 18767105  T

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Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 371 - 448
Target Start/End: Original strand, 14997733 - 14997810
Alignment:
Q  371 tttacagtattatctgtaacattcaaaacgtgtttcaatatgttacatcattgtaacattttttgtatcaccagtaac 448  Q
    |||| ||||||| |||||||||||||||  |||  ||| |  |||||| ||||||||| ||||||||||||| |||||    
T  14997733 tttatagtattaactgtaacattcaaaaaatgtcgcaaaacattacattattgtaacactttttgtatcaccggtaac 14997810  T

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Target: chr1 (Bit Score: 46; Significance: 5e-17; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 347 - 448
Target Start/End: Original strand, 51758842 - 51758941
Alignment:
Q  347 ttacaaaagagttttaagtcacactttacagtattatctgtaacattcaaaacgtgtttcaatatgttacatcattgtaacattttttgtatcaccagta 446  Q
    |||| ||||||||||| || ||| |||| |||||||||||||||| | |||| ||||| ||| ||||||||| ||||||||| |||||||||||||||||    
T  51758842 ttactaaagagtttta-gttacattttatagtattatctgtaacaattaaaaagtgttgcaa-atgttacattattgtaacactttttgtatcaccagta 51758939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 371 - 448
Target Start/End: Complemental strand, 39368627 - 39368550
Alignment:
Q  371 tttacagtattatctgtaacattcaaaacgtgtttcaatatgttacatcattgtaacattttttgtatcaccagtaac 448  Q
    |||| ||||||||| |||||||| |||| ||||  ||| ||||||||| ||||||||| ||||||||||||| |||||    
T  39368627 tttatagtattatcagtaacatttaaaaagtgtcgcaaaatgttacattattgtaacactttttgtatcaccggtaac 39368550  T

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Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 371 - 442
Target Start/End: Original strand, 18308260 - 18308331
Alignment:
Q  371 tttacagtattatctgtaacattcaaaacgtgtttcaatatgttacatcattgtaacattttttgtatcacc 442  Q
    |||| |||||| | |||||||||||||| ||||  ||| ||||||||| ||||||||| |||||||||||||    
T  18308260 tttatagtattgtttgtaacattcaaaaagtgtcacaaaatgttacattattgtaacactttttgtatcacc 18308331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 410 - 448
Target Start/End: Original strand, 897605 - 897643
Alignment:
Q  410 atgttacatcattgtaacattttttgtatcaccagtaac 448  Q
    ||||||||| ||||||||| |||||||||||||||||||    
T  897605 atgttacattattgtaacactttttgtatcaccagtaac 897643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 273 - 338
Target Start/End: Original strand, 28636882 - 28636948
Alignment:
Q  273 cactacaatataattgagatctagtaacactt-aaaattgttgctaaaccaagaagaatgttactaa 338  Q
    |||||||| |||||| ||||||||||||| || ||||||||  ||||| |||||| |||||||||||    
T  28636882 cactacaacataattaagatctagtaacatttaaaaattgtaactaaatcaagaaaaatgttactaa 28636948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 410 - 447
Target Start/End: Original strand, 28637054 - 28637091
Alignment:
Q  410 atgttacatcattgtaacattttttgtatcaccagtaa 447  Q
    ||||||||| ||||||||| ||||||||||||||||||    
T  28637054 atgttacattattgtaacactttttgtatcaccagtaa 28637091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 44; Significance: 8e-16; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 345 - 448
Target Start/End: Original strand, 28745062 - 28745164
Alignment:
Q  345 tgttacaaaagagttttaagtcacactttacagtattatctgtaacattcaaaacgtgtttcaatatgttacatcattgtaacattttttgtatcaccag 444  Q
    |||||| ||||||||||| || ||| |||| |||||||| |||||||||||||| ||||  ||| || |||||| ||||||||| ||||||||||| |||    
T  28745062 tgttactaaagagtttta-gttacattttagagtattatttgtaacattcaaaaagtgtcgcaaaattttacattattgtaacactttttgtatcatcag 28745160  T
Q  445 taac 448  Q
    ||||    
T  28745161 taac 28745164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 345 - 447
Target Start/End: Complemental strand, 27259467 - 27259366
Alignment:
Q  345 tgttacaaaagagttttaagtcacactttacagtattatctgtaacattcaaaacgtgtttcaatatgttacatcattgtaacattttttgtatcaccag 444  Q
    |||||| |||||| |||| || ||| |||| ||||||||||||||||||||||| ||||   || ||||||||| ||||||||| ||||||||||||| |    
T  27259467 tgttactaaagagcttta-gttacattttagagtattatctgtaacattcaaaaagtgtcgtaaaatgttacattattgtaacactttttgtatcacctg 27259369  T
Q  445 taa 447  Q
    |||    
T  27259368 taa 27259366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 346 - 442
Target Start/End: Original strand, 19985083 - 19985178
Alignment:
Q  346 gttacaaaagagttttaagtcacactttacagtattatctgtaacattcaaaacgtgtttcaatatgttacatcattgtaacattttttgtatcacc 442  Q
    ||||| ||||||||||| || ||| |||| |||||||| ||||| | |||||| ||||| ||| ||||||||| ||||||||| |||||||||||||    
T  19985083 gttactaaagagtttta-gttacattttatagtattatatgtaataatcaaaaagtgttgcaaaatgttacattattgtaacactttttgtatcacc 19985178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 345 - 448
Target Start/End: Original strand, 17037630 - 17037731
Alignment:
Q  345 tgttacaaaagagttttaagtcacactttacagtattatctgtaacattcaaaacgtgtttcaatatgttacatcattgtaacattttttgtatcaccag 444  Q
    |||||| ||||||||||| || ||| |||| |||||||||||||||| | |||| ||||  ||| ||||||||| ||||||||| |||||||||||| ||    
T  17037630 tgttactaaagagtttta-gttacattttatagtattatctgtaacaattaaaaagtgtcgcaa-atgttacattattgtaacactttttgtatcactag 17037727  T
Q  445 taac 448  Q
    ||||    
T  17037728 taac 17037731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 273 - 336
Target Start/End: Original strand, 31571008 - 31571072
Alignment:
Q  273 cactacaatataattgagatctagtaacactt-aaaattgttgctaaaccaagaagaatgttact 336  Q
    |||||||| |||||||| |||||||||||||| |||||||||  |||| |||||| |||||||||    
T  31571008 cactacaacataattgacatctagtaacacttgaaaattgttattaaaacaagaaaaatgttact 31571072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 345 - 441
Target Start/End: Complemental strand, 5079077 - 5078983
Alignment:
Q  345 tgttacaaaagagttttaagtcacactttacagtattatctgtaacattcaaaacgtgtttcaatatgttacatcattgtaacattttttgtatcac 441  Q
    |||||| |||| |||||| || ||| |||| |||| ||||||||||| |||||| ||||| ||| ||| ||| | ||||||||| ||||||||||||    
T  5079077 tgttactaaagtgtttta-gttacattttatagtactatctgtaacaatcaaaaagtgttgcaa-atggtaccttattgtaacactttttgtatcac 5078983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 273 - 336
Target Start/End: Original strand, 30786246 - 30786310
Alignment:
Q  273 cactacaatataattgagatctagtaacactt-aaaattgttgctaaaccaagaagaatgttact 336  Q
    |||||||| |||||| |||||||||||||||| ||||||||  || || |||||| |||||||||    
T  30786246 cactacaacataattaagatctagtaacacttgaaaattgtaacttaatcaagaaaaatgttact 30786310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0069 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0069
Description:

Target: scaffold0069; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 345 - 448
Target Start/End: Complemental strand, 40711 - 40610
Alignment:
Q  345 tgttacaaaagagttttaagtcacactttacagtattatctgtaacattcaaaacgtgtttcaatatgttacatcattgtaacattttttgtatcaccag 444  Q
    |||||| ||||||||||| || ||| |||| |||||||||||||||| | |||| |||| |||| ||||||||| || |||||| |||||||||||| ||    
T  40711 tgttactaaagagtttta-gttacattttatagtattatctgtaacaattaaaaagtgtctcaa-atgttacattatcgtaacactttttgtatcactag 40614  T
Q  445 taac 448  Q
    ||||    
T  40613 taac 40610  T

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Target: chr7 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 273 - 336
Target Start/End: Complemental strand, 26619223 - 26619160
Alignment:
Q  273 cactacaatataattgagatctagtaacacttaaaattgttgctaaaccaagaagaatgttact 336  Q
    |||||||| |||||||| |||||||||||||| |||||||| ||||| |||||| |||||||||    
T  26619223 cactacaacataattgacatctagtaacacttgaaattgttactaaatcaagaaaaatgttact 26619160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 376 - 442
Target Start/End: Complemental strand, 26619087 - 26619021
Alignment:
Q  376 agtattatctgtaacattcaaaacgtgtttcaatatgttacatcattgtaacattttttgtatcacc 442  Q
    |||||||| |||||||||||||| ||||  ||| ||| ||||| ||||||||| |||||||||||||    
T  26619087 agtattatttgtaacattcaaaaagtgtcgcaaaatgctacattattgtaacactttttgtatcacc 26619021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 345 - 442
Target Start/End: Complemental strand, 26621104 - 26621008
Alignment:
Q  345 tgttacaaaagagttttaagtcacactttacagtattatctgtaacattcaaaacgtgtttcaatatgttacatcattgtaacattttttgtatcacc 442  Q
    |||||| |||||| |||| || ||| |||| ||||||||||||||||||||||| ||||   || ||||||||| |||| |||| || ||||||||||    
T  26621104 tgttactaaagagcttta-gttacattttatagtattatctgtaacattcaaaaagtgtcataaaatgttacattattgcaacacttgttgtatcacc 26621008  T

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Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 345 - 441
Target Start/End: Complemental strand, 9242497 - 9242403
Alignment:
Q  345 tgttacaaaagagttttaagtcacactttacagtattatctgtaacattcaaaacgtgtttcaatatgttacatcattgtaacattttttgtatcac 441  Q
    |||||| ||||||||||| || ||| |||| |||||||||| ||||| | |||| ||||  ||| ||||||||| ||||||||| ||||||||||||    
T  9242497 tgttactaaagagtttta-gttacattttatagtattatctataacaattaaaaagtgtcgcaa-atgttacattattgtaacactttttgtatcac 9242403  T

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Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 275 - 336
Target Start/End: Original strand, 30089716 - 30089778
Alignment:
Q  275 ctacaatataattgagatctagtaacactt-aaaattgttgctaaaccaagaagaatgttact 336  Q
    |||||| |||||||| |||||||||||||| |||| |||| ||||| |||||| |||||||||    
T  30089716 ctacaaaataattgacatctagtaacacttgaaaactgttactaaatcaagaaaaatgttact 30089778  T

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Target: chr6 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 345 - 448
Target Start/End: Complemental strand, 17719736 - 17719635
Alignment:
Q  345 tgttacaaaagagttttaagtcacactttacagtattatctgtaacattcaaaacgtgtttcaatatgttacatcattgtaacattttttgtatcaccag 444  Q
    |||||| ||||||||||| || ||| |||| |||||||||||||||| | |||| ||||  ||| ||||||||| ||||||||| |||||||||||| ||    
T  17719736 tgttactaaagagtttta-gttacaatttatagtattatctgtaacaattaaaaagtgtcgcaa-atgttacattattgtaacactttttgtatcactag 17719639  T
Q  445 taac 448  Q
    ||||    
T  17719638 taac 17719635  T

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Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 345 - 441
Target Start/End: Original strand, 12591920 - 12592014
Alignment:
Q  345 tgttacaaaagagttttaagtcacactttacagtattatctgtaacattcaaaacgtgtttcaatatgttacatcattgtaacattttttgtatcac 441  Q
    |||||| ||||||||||| || ||| |||| |||||||||||||||| | |||| ||||  ||| ||||||||| ||||||||| ||||||||||||    
T  12591920 tgttactaaagagtttta-gttacaatttatagtattatctgtaacaattaaaaagtgtcgcaa-atgttacattattgtaacactttttgtatcac 12592014  T

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Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 345 - 448
Target Start/End: Complemental strand, 14669359 - 14669258
Alignment:
Q  345 tgttacaaaagagttttaagtcacactttacagtattatctgtaacattcaaaacgtgtttcaatatgttacatcattgtaacattttttgtatcaccag 444  Q
    |||||| ||||||||||| || ||| |||| |||||||| ||||||| | |||| ||||  ||| ||||||||| ||||||||| |||||||||||| ||    
T  14669359 tgttactaaagagtttta-gttacattttatagtattatttgtaacaattaaaaagtgtcacaa-atgttacattattgtaacactttttgtatcactag 14669262  T
Q  445 taac 448  Q
    ||||    
T  14669261 taac 14669258  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 371 - 440
Target Start/End: Original strand, 1942681 - 1942750
Alignment:
Q  371 tttacagtattatctgtaacattcaaaacgtgtttcaatatgttacatcattgtaacattttttgtatca 440  Q
    |||| |||||||||||||||| | ||||  |||  ||| ||||||||| |||||||||| ||||||||||    
T  1942681 tttatagtattatctgtaacaattaaaatatgtcgcaaaatgttacattattgtaacatcttttgtatca 1942750  T

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Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 272 - 339
Target Start/End: Complemental strand, 23904474 - 23904406
Alignment:
Q  272 gcactacaatataattgagatctagtaacactt-aaaattgttgctaaaccaagaagaatgttactaaa 339  Q
    |||| |||| ||||||||||||||||||||||| ||||||| | |||||  ||||| || |||||||||    
T  23904474 gcacaacaacataattgagatctagtaacacttgaaaattgctactaaatgaagaaaaaagttactaaa 23904406  T

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Target: chr4 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 345 - 448
Target Start/End: Original strand, 1152131 - 1152232
Alignment:
Q  345 tgttacaaaagagttttaagtcacactttacagtattatctgtaacattcaaaacgtgtttcaatatgttacatcattgtaacattttttgtatcaccag 444  Q
    |||||| ||||||||||| || ||| |||| | |||||||||||||| | |||| |||| |||| ||||||||| ||||||||| |||||||||||| ||    
T  1152131 tgttactaaagagtttta-gttacagtttataatattatctgtaacaattaaaaagtgtctcaa-atgttacattattgtaacactttttgtatcactag 1152228  T
Q  445 taac 448  Q
    ||||    
T  1152229 taac 1152232  T

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Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 345 - 448
Target Start/End: Complemental strand, 1684965 - 1684864
Alignment:
Q  345 tgttacaaaagagttttaagtcacactttacagtattatctgtaacattcaaaacgtgtttcaatatgttacatcattgtaacattttttgtatcaccag 444  Q
    |||||| ||||||||||| || ||| |||| |||||||||||||||| | |||| ||||  ||| ||||||||  ||||||||| |||||||||||| ||    
T  1684965 tgttactaaagagtttta-gttacaatttatagtattatctgtaacaattaaaaagtgtcgcaa-atgttacaatattgtaacactttttgtatcactag 1684868  T
Q  445 taac 448  Q
    ||||    
T  1684867 taac 1684864  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 273 - 336
Target Start/End: Complemental strand, 4923754 - 4923690
Alignment:
Q  273 cactacaatataattgagatctagtaacactt-aaaattgttgctaaaccaagaagaatgttact 336  Q
    |||||||| |||||| | ||| |||||||||| ||||||||| ||||| |||||| |||||||||    
T  4923754 cactacaacataattaacatccagtaacacttaaaaattgttactaaatcaagaaaaatgttact 4923690  T

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Target: scaffold0684 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0684
Description:

Target: scaffold0684; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 345 - 448
Target Start/End: Complemental strand, 760 - 659
Alignment:
Q  345 tgttacaaaagagttttaagtcacactttacagtattatctgtaacattcaaaacgtgtttcaatatgttacatcattgtaacattttttgtatcaccag 444  Q
    |||||| ||||||||||| || ||| |||| |||||||||| ||||| | |||| ||||  ||| ||||||||| |||| |||| |||||||||||| ||    
T  760 tgttactaaagagtttta-gttacattttatagtattatctataacaattaaaaagtgtcgcaa-atgttacattattggaacactttttgtatcactag 663  T
Q  445 taac 448  Q
    ||||    
T  662 taac 659  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 371 - 448
Target Start/End: Original strand, 24479264 - 24479341
Alignment:
Q  371 tttacagtattatctgtaacattcaaaacgtgtttcaatatgttacatcattgtaacattttttgtatcaccagtaac 448  Q
    |||| |||||||||| |||||||||||| ||||   || | ||||||  |||||||||||||||||| ||||| ||||    
T  24479264 tttatagtattatctataacattcaaaaagtgtcgtaaaaggttacactattgtaacattttttgtaccaccattaac 24479341  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 278 - 338
Target Start/End: Complemental strand, 27151347 - 27151287
Alignment:
Q  278 caatataattgagatctagtaacacttaaaattgttgctaaaccaagaagaatgttactaa 338  Q
    |||||||||||| ||||||||| | || |||||||| ||||| |||||| ||||| |||||    
T  27151347 caatataattgacatctagtaataatttaaattgttactaaatcaagaaaaatgtcactaa 27151287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 345 - 441
Target Start/End: Complemental strand, 31342729 - 31342635
Alignment:
Q  345 tgttacaaaagagttttaagtcacactttacagtattatctgtaacattcaaaacgtgtttcaatatgttacatcattgtaacattttttgtatcac 441  Q
    |||||| |||| |||||| || ||| |||| |||| ||||||||||| |||||| ||||| ||| ||| ||| | ||||||||| ||||||||||||    
T  31342729 tgttactaaagtgtttta-gttacattttatagtactatctgtaacaatcaaaaagtgttgcaa-atggtaccttattgtaacactttttgtatcac 31342635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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