View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2861_low_7 (Length: 455)
Name: NF2861_low_7
Description: NF2861
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2861_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 337; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 10 - 437
Target Start/End: Original strand, 38708014 - 38708435
Alignment:
| Q |
10 |
aacaatattctagttttatttgtatttacgcttgttaaaacatgtgattggtctgttttttagcttgaaaattagtttgtctaaagcatgtgttccatga |
109 |
Q |
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| T |
38708014 |
aacaatattctaattttatttgtatttacgcttgttaaaacatgtgattggtctgttttttagcttgaaaattagtttgtctaaagcatgtgttacatga |
38708113 |
T |
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| Q |
110 |
gcaagacttgtgnnnnnnnggtgtaagagcaagacttgtgtggtaaccaatattttctggcacacttacataaatagnnnnnnnnnnnnnnngtagaaaa |
209 |
Q |
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| T |
38708114 |
gcaagacttgtgtttttttggtgtaagagcaagacttgtgtggtaaccaatattttctggcacacttacataaatagtaaaaaaaa------gtagaaaa |
38708207 |
T |
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| Q |
210 |
agaatactcaatattttctttttactaaaatattgaaaagatatatattttatgtttgtgtgtctaagtgtgattaatatttctggttgtgaccaactaa |
309 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
38708208 |
agaatactcaatattttctttttactaaaatattgaaaagatatatattttatgtttgtgtgtttaagtgtgattaatatttctggttgtgaccaactaa |
38708307 |
T |
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| Q |
310 |
atattttccgtatttcattcaatgaagaaatttaaacggtgctcttttttctaacgcccaaaacaccggtcgtttagtactccatattgatgacgagatc |
409 |
Q |
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| T |
38708308 |
atattttccgtatttcattcaatgaagaaatttaaacggtgctcttttttctagcgcccaaaacaccggtcgtttagtactccatattgatggcgagatc |
38708407 |
T |
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| Q |
410 |
ttttcctgtgttgtttccgtgcccaaaa |
437 |
Q |
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| T |
38708408 |
ttttcctgtgttgtttccgtgcccaaaa |
38708435 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 202 - 309
Target Start/End: Complemental strand, 27829732 - 27829623
Alignment:
| Q |
202 |
gtagaaaaagaatactcaatattttctttttactaaaatattgaaaaga--tatatattttatgtttgtg--tgtctaagtgtgattaatatttctggtt |
297 |
Q |
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|||||||||||| ||||||| |||||||||| |||||||||| ||| || |||||||||||||| |||| || |||| ||||||||||||| |||| |
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| T |
27829732 |
gtagaaaaagaacactcaattttttctttttgctaaaatatttaaatgatgtatatattttatgtgtgtgcatgcctaa--gtgattaatatttagggtt |
27829635 |
T |
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| Q |
298 |
gtgaccaactaa |
309 |
Q |
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|||||||||||| |
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| T |
27829634 |
gtgaccaactaa |
27829623 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 212 - 269
Target Start/End: Complemental strand, 17113522 - 17113463
Alignment:
| Q |
212 |
aatactcaatattttctttttactaaaatattgaaaagat--atatattttatgtttgtg |
269 |
Q |
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| T |
17113522 |
aatactcaattttttctttttattaaaatatttaaatgatggatatattttatgtgtgtg |
17113463 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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