View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2861_low_9 (Length: 364)

Name: NF2861_low_9
Description: NF2861
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2861_low_9
NF2861_low_9
[»] chr3 (13 HSPs)
chr3 (196-353)||(9856434-9856591)
chr3 (15-83)||(9856704-9856772)
chr3 (283-335)||(17755844-17755896)
chr3 (283-335)||(19057164-19057216)
chr3 (283-335)||(9240746-9240798)
chr3 (283-335)||(25716844-25716896)
chr3 (283-334)||(25937844-25937895)
chr3 (221-279)||(9240859-9240917)
chr3 (219-279)||(5565074-5565134)
chr3 (225-275)||(9241009-9241059)
chr3 (225-279)||(17755736-17755790)
chr3 (225-279)||(19057056-19057110)
chr3 (219-263)||(837271-837315)
[»] chr8 (8 HSPs)
chr8 (280-335)||(13461805-13461860)
chr8 (283-335)||(38294910-38294962)
chr8 (220-277)||(604382-604439)
chr8 (280-315)||(38294969-38295004)
chr8 (220-277)||(604557-604614)
chr8 (230-279)||(13461879-13461928)
chr8 (230-279)||(31249373-31249422)
chr8 (283-335)||(39616915-39616967)
[»] chr5 (4 HSPs)
chr5 (283-335)||(7779559-7779611)
chr5 (220-279)||(7779439-7779498)
chr5 (220-279)||(14854327-14854386)
chr5 (230-279)||(3432999-3433048)
[»] chr7 (11 HSPs)
chr7 (221-279)||(4455363-4455421)
chr7 (283-335)||(16377562-16377614)
chr7 (283-335)||(4455482-4455534)
chr7 (283-335)||(16376422-16376474)
chr7 (283-333)||(5553812-5553862)
chr7 (220-276)||(4454919-4454975)
chr7 (220-263)||(23591481-23591524)
chr7 (220-279)||(38694861-38694920)
chr7 (285-335)||(24788724-24788774)
chr7 (230-279)||(16377478-16377527)
chr7 (283-315)||(5553869-5553901)
[»] scaffold0090 (1 HSPs)
scaffold0090 (283-335)||(12418-12470)
[»] chr2 (15 HSPs)
chr2 (283-335)||(17930418-17930470)
chr2 (277-334)||(41075759-41075816)
chr2 (277-334)||(41076324-41076381)
chr2 (283-335)||(11131355-11131407)
chr2 (221-279)||(15255830-15255888)
chr2 (283-335)||(38857747-38857799)
chr2 (219-279)||(41076470-41076530)
chr2 (220-263)||(29550128-29550171)
chr2 (220-279)||(38857854-38857913)
chr2 (287-334)||(41076042-41076089)
chr2 (221-263)||(3249867-3249909)
chr2 (221-275)||(17930535-17930589)
chr2 (280-312)||(11131313-11131345)
chr2 (283-335)||(15256501-15256553)
chr2 (280-316)||(17930476-17930512)
[»] chr6 (15 HSPs)
chr6 (281-335)||(12296005-12296059)
chr6 (284-334)||(17201476-17201526)
chr6 (283-335)||(24223463-24223515)
chr6 (219-279)||(24223576-24223636)
chr6 (221-279)||(12295927-12295985)
chr6 (285-335)||(17079943-17079993)
chr6 (221-277)||(17199982-17200038)
chr6 (283-335)||(24223108-24223160)
chr6 (220-279)||(16799563-16799622)
chr6 (280-315)||(17200571-17200606)
chr6 (232-279)||(17203662-17203709)
chr6 (283-333)||(6601875-6601925)
chr6 (281-315)||(16799510-16799544)
chr6 (221-279)||(17200320-17200378)
chr6 (220-277)||(24223211-24223268)
[»] chr4 (6 HSPs)
chr4 (283-333)||(19553377-19553427)
chr4 (217-279)||(46883329-46883391)
chr4 (284-335)||(9711335-9711385)
chr4 (283-330)||(29013796-29013843)
chr4 (220-275)||(47428297-47428352)
chr4 (280-334)||(46883410-46883466)
[»] chr1 (8 HSPs)
chr1 (283-335)||(11928311-11928363)
chr1 (283-335)||(41460966-41461018)
chr1 (283-335)||(49484051-49484103)
chr1 (283-334)||(52740982-52741033)
chr1 (283-335)||(46533030-46533082)
chr1 (293-335)||(23482588-23482630)
chr1 (220-261)||(6537500-6537541)
chr1 (283-335)||(41462629-41462681)
[»] scaffold0368 (1 HSPs)
scaffold0368 (283-330)||(279-326)


Alignment Details
Target: chr3 (Bit Score: 142; Significance: 2e-74; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 196 - 353
Target Start/End: Complemental strand, 9856591 - 9856434
Alignment:
Q  196 aaaggattatttcaaaatattttgtatccttatctattaattttattagatctgtaacaatttaaccttataatttccctctaacagcaatttaacctaa 295  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||| ||||    
T  9856591 aaaggattatttcaaaatattttgtatccttatctattaattttattagatctgtaacaacttaacctaataatttccctctaacagcaatttaatctaa 9856492  T
Q  296 caaatttcctctaaaatgcaaaaatccctaatatttctccgatgagctttttattcat 353  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  9856491 caaatttcctctaaaatgcaaaaatccctaatatttctccgatgagcttttcattcat 9856434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 15 - 83
Target Start/End: Complemental strand, 9856772 - 9856704
Alignment:
Q  15 aataaatctttcttttcagaggtgtacggagtaaatcttgggaatcaagtatgaggattttgtattgga 83  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9856772 aataaatcttttttttcagaggtgtacggagtaaatcttgggaatcaagtatgaggattttgtattgga 9856704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 283 - 335
Target Start/End: Original strand, 17755844 - 17755896
Alignment:
Q  283 caatttaacctaacaaatttcctctaaaatgcaaaaatccctaatatttctcc 335  Q
    |||||||||||||||||||||||||||||||||  ||||||||||||||||||    
T  17755844 caatttaacctaacaaatttcctctaaaatgcagcaatccctaatatttctcc 17755896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 283 - 335
Target Start/End: Original strand, 19057164 - 19057216
Alignment:
Q  283 caatttaacctaacaaatttcctctaaaatgcaaaaatccctaatatttctcc 335  Q
    |||||||||||||||||||||||||||||||||  ||||||||||||||||||    
T  19057164 caatttaacctaacaaatttcctctaaaatgcagcaatccctaatatttctcc 19057216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 283 - 335
Target Start/End: Complemental strand, 9240798 - 9240746
Alignment:
Q  283 caatttaacctaacaaatttcctctaaaatgcaaaaatccctaatatttctcc 335  Q
    |||||||||||||||||||||||| ||||||||  ||||||||||||||||||    
T  9240798 caatttaacctaacaaatttcctcaaaaatgcagcaatccctaatatttctcc 9240746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 283 - 335
Target Start/End: Complemental strand, 25716896 - 25716844
Alignment:
Q  283 caatttaacctaacaaatttcctctaaaatgcaaaaatccctaatatttctcc 335  Q
    |||||||| |||||||||| |||||||||||||  ||||||||||||||||||    
T  25716896 caatttaagctaacaaattccctctaaaatgcagcaatccctaatatttctcc 25716844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 283 - 334
Target Start/End: Original strand, 25937844 - 25937895
Alignment:
Q  283 caatttaacctaacaaatttcctctaaaatgcaaaaatccctaatatttctc 334  Q
    ||||||||||||||||||| ||||||| |||||  |||||||||||||||||    
T  25937844 caatttaacctaacaaattccctctaacatgcagcaatccctaatatttctc 25937895  T

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Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 221 - 279
Target Start/End: Complemental strand, 9240917 - 9240859
Alignment:
Q  221 atccttatctattaattttattagatctgtaacaatttaaccttataatttccctctaa 279  Q
    |||||||| ||||||||||||||  |||| ||||| ||||||| |||||||||||||||    
T  9240917 atccttatttattaattttattacgtctgcaacaacttaacctaataatttccctctaa 9240859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 219 - 279
Target Start/End: Original strand, 5565074 - 5565134
Alignment:
Q  219 gtatccttatctattaattttattagatctgtaacaatttaaccttataatttccctctaa 279  Q
    |||||||||  ||||||||||||||| |||| ||||| ||||||| ||| |||||||||||    
T  5565074 gtatccttaattattaattttattaggtctgcaacaacttaacctaatattttccctctaa 5565134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 225 - 275
Target Start/End: Complemental strand, 9241059 - 9241009
Alignment:
Q  225 ttatctattaattttattagatctgtaacaatttaaccttataatttccct 275  Q
    |||| ||||||||||||||| |||| ||||| ||||||| |||||||||||    
T  9241059 ttatttattaattttattagctctgcaacaacttaacctaataatttccct 9241009  T

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Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 225 - 279
Target Start/End: Original strand, 17755736 - 17755790
Alignment:
Q  225 ttatctattaattttattagatctgtaacaatttaaccttataatttccctctaa 279  Q
    |||| ||||||||||||||| || | | ||||||||||| |||||||||||||||    
T  17755736 ttatttattaattttattaggtccgcagcaatttaacctaataatttccctctaa 17755790  T

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Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 225 - 279
Target Start/End: Original strand, 19057056 - 19057110
Alignment:
Q  225 ttatctattaattttattagatctgtaacaatttaaccttataatttccctctaa 279  Q
    |||| ||||||||||||||| || | | ||||||||||| |||||||||||||||    
T  19057056 ttatttattaattttattaggtccgcagcaatttaacctaataatttccctctaa 19057110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 219 - 263
Target Start/End: Complemental strand, 837315 - 837271
Alignment:
Q  219 gtatccttatctattaattttattagatctgtaacaatttaacct 263  Q
    |||||||||| ||||||||||||||  |||| |||||||||||||    
T  837315 gtatccttatttattaattttattatgtctgcaacaatttaacct 837271  T

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Target: chr8 (Bit Score: 48; Significance: 2e-18; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 280 - 335
Target Start/End: Complemental strand, 13461860 - 13461805
Alignment:
Q  280 cagcaatttaacctaacaaatttcctctaaaatgcaaaaatccctaatatttctcc 335  Q
    |||||||||||||||||||||| |||||||||||||| ||||||||||||||||||    
T  13461860 cagcaatttaacctaacaaattccctctaaaatgcaacaatccctaatatttctcc 13461805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 283 - 335
Target Start/End: Complemental strand, 38294962 - 38294910
Alignment:
Q  283 caatttaacctaacaaatttcctctaaaatgcaaaaatccctaatatttctcc 335  Q
    ||||||||||||||||||| |||||||||||||  ||||||||||||||||||    
T  38294962 caatttaacctaacaaattccctctaaaatgcagcaatccctaatatttctcc 38294910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 220 - 277
Target Start/End: Complemental strand, 604439 - 604382
Alignment:
Q  220 tatccttatctattaattttattagatctgtaacaatttaaccttataatttccctct 277  Q
    ||||||||| |||||||||| ||||||||||| ||| ||||||| ||| |||||||||    
T  604439 tatccttatttattaattttgttagatctgtagcaacttaacctaatattttccctct 604382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 280 - 315
Target Start/End: Complemental strand, 38295004 - 38294969
Alignment:
Q  280 cagcaatttaacctaacaaatttcctctaaaatgca 315  Q
    |||||||||||||||||||||||| |||||||||||    
T  38295004 cagcaatttaacctaacaaatttcatctaaaatgca 38294969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 220 - 277
Target Start/End: Complemental strand, 604614 - 604557
Alignment:
Q  220 tatccttatctattaattttattagatctgtaacaatttaaccttataatttccctct 277  Q
    ||||||| | |||||||||| ||||||||||| ||| ||||||| ||| |||||||||    
T  604614 tatccttgtttattaattttgttagatctgtagcaacttaacctaatattttccctct 604557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 230 - 279
Target Start/End: Complemental strand, 13461928 - 13461879
Alignment:
Q  230 tattaattttattagatctgtaacaatttaaccttataatttccctctaa 279  Q
    ||||||||||||||||| || ||||| |||||||  ||||||||||||||    
T  13461928 tattaattttattagatttgcaacaagttaacctactaatttccctctaa 13461879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 230 - 279
Target Start/End: Complemental strand, 31249422 - 31249373
Alignment:
Q  230 tattaattttattagatctgtaacaatttaaccttataatttccctctaa 279  Q
    |||||||||||||||||||| | ||| ||||| | |||||||||||||||    
T  31249422 tattaattttattagatctgcatcaacttaacataataatttccctctaa 31249373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 283 - 335
Target Start/End: Complemental strand, 39616967 - 39616915
Alignment:
Q  283 caatttaacctaacaaatttcctctaaaatgcaaaaatccctaatatttctcc 335  Q
    ||||||||||||||||||| || |||||||||    |||||||||||||||||    
T  39616967 caatttaacctaacaaattcccactaaaatgccgtgatccctaatatttctcc 39616915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 45; Significance: 1e-16; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 283 - 335
Target Start/End: Original strand, 7779559 - 7779611
Alignment:
Q  283 caatttaacctaacaaatttcctctaaaatgcaaaaatccctaatatttctcc 335  Q
    ||||||||||||||||||| |||||||||||||| ||||||||||||||||||    
T  7779559 caatttaacctaacaaattccctctaaaatgcaacaatccctaatatttctcc 7779611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 220 - 279
Target Start/End: Original strand, 7779439 - 7779498
Alignment:
Q  220 tatccttatctattaattttattagatctgtaacaatttaaccttataatttccctctaa 279  Q
    ||||||||| ||||||||||||||| |||  ||||| ||||||| |||||||||||||||    
T  7779439 tatccttatttattaattttattaggtctacaacaacttaacctaataatttccctctaa 7779498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 220 - 279
Target Start/End: Original strand, 14854327 - 14854386
Alignment:
Q  220 tatccttatctattaattttattagatctgtaacaatttaaccttataatttccctctaa 279  Q
    ||||||||| ||||||||||||||| | || | ||| ||||||| |||||||||||||||    
T  14854327 tatccttatttattaattttattaggtttgcagcaacttaacctaataatttccctctaa 14854386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 230 - 279
Target Start/End: Original strand, 3432999 - 3433048
Alignment:
Q  230 tattaattttattagatctgtaacaatttaaccttataatttccctctaa 279  Q
    ||||||||||||||||| || ||||| ||||||| ||||||| |||||||    
T  3432999 tattaattttattagatttgcaacaacttaacctaataattttcctctaa 3433048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 221 - 279
Target Start/End: Original strand, 4455363 - 4455421
Alignment:
Q  221 atccttatctattaattttattagatctgtaacaatttaaccttataatttccctctaa 279  Q
    |||||||| ||||||||||||||| |||| ||||||||||||| |||||||||||||||    
T  4455363 atccttatttattaattttattaggtctgcaacaatttaacctaataatttccctctaa 4455421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 283 - 335
Target Start/End: Complemental strand, 16377614 - 16377562
Alignment:
Q  283 caatttaacctaacaaatttcctctaaaatgcaaaaatccctaatatttctcc 335  Q
    |||||||||||| ||||||||||||||||||||  ||||||||||||||||||    
T  16377614 caatttaacctatcaaatttcctctaaaatgcagcaatccctaatatttctcc 16377562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 283 - 335
Target Start/End: Original strand, 4455482 - 4455534
Alignment:
Q  283 caatttaacctaacaaatttcctctaaaatgcaaaaatccctaatatttctcc 335  Q
    |||| |||||||||||||| |||||||||||||  ||||||||||||||||||    
T  4455482 caatataacctaacaaattccctctaaaatgcagcaatccctaatatttctcc 4455534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 283 - 335
Target Start/End: Complemental strand, 16376474 - 16376422
Alignment:
Q  283 caatttaacctaacaaatttcctctaaaatgcaaaaatccctaatatttctcc 335  Q
    ||||||||||||||||||| |||||||| ||||  ||||||||||||||||||    
T  16376474 caatttaacctaacaaattccctctaaagtgcagcaatccctaatatttctcc 16376422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 283 - 333
Target Start/End: Complemental strand, 5553862 - 5553812
Alignment:
Q  283 caatttaacctaacaaatttcctctaaaatgcaaaaatccctaatatttct 333  Q
    |||||||||||||||||||  ||||||||||||| ||||| ||||||||||    
T  5553862 caatttaacctaacaaattctctctaaaatgcaacaatccttaatatttct 5553812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 220 - 276
Target Start/End: Original strand, 4454919 - 4454975
Alignment:
Q  220 tatccttatctattaattttattagatctgtaacaatttaaccttataatttccctc 276  Q
    ||||||||| ||||||||||||||| |||| ||||| ||||||| ||| ||||||||    
T  4454919 tatccttatttattaattttattaggtctgcaacaacttaacctaatattttccctc 4454975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 220 - 263
Target Start/End: Complemental strand, 23591524 - 23591481
Alignment:
Q  220 tatccttatctattaattttattagatctgtaacaatttaacct 263  Q
    ||||||||| |||||||||| ||||||||| |||||||||||||    
T  23591524 tatccttatttattaattttgttagatctgcaacaatttaacct 23591481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 220 - 279
Target Start/End: Complemental strand, 38694920 - 38694861
Alignment:
Q  220 tatccttatctattaattttattagatctgtaacaatttaaccttataatttccctctaa 279  Q
    ||||||||| |||||| |||||||| |||| | ||| ||||||| |||||||||||||||    
T  38694920 tatccttatttattaagtttattaggtctgcagcaacttaacctaataatttccctctaa 38694861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 285 - 335
Target Start/End: Complemental strand, 24788774 - 24788724
Alignment:
Q  285 atttaacctaacaaatttcctctaaaatgcaaaaatccctaatatttctcc 335  Q
    |||||||||||||||||||| | ||||||||  |||| |||||||||||||    
T  24788774 atttaacctaacaaatttccacaaaaatgcagcaatcactaatatttctcc 24788724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 230 - 279
Target Start/End: Complemental strand, 16377527 - 16377478
Alignment:
Q  230 tattaattttattagatctgtaacaatttaaccttataatttccctctaa 279  Q
    |||||||||||||||||||| |  || ||||||| |||||||||||||||    
T  16377527 tattaattttattagatctgcagtaacttaacctaataatttccctctaa 16377478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 283 - 315
Target Start/End: Complemental strand, 5553901 - 5553869
Alignment:
Q  283 caatttaacctaacaaatttcctctaaaatgca 315  Q
    ||||||||||||||||||||| |||||||||||    
T  5553901 caatttaacctaacaaatttcatctaaaatgca 5553869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0090 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0090
Description:

Target: scaffold0090; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 283 - 335
Target Start/End: Complemental strand, 12470 - 12418
Alignment:
Q  283 caatttaacctaacaaatttcctctaaaatgcaaaaatccctaatatttctcc 335  Q
    ||||||||||||||||||| |||||||||| ||| ||||||||||||||||||    
T  12470 caatttaacctaacaaattccctctaaaatacaacaatccctaatatttctcc 12418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 283 - 335
Target Start/End: Complemental strand, 17930470 - 17930418
Alignment:
Q  283 caatttaacctaacaaatttcctctaaaatgcaaaaatccctaatatttctcc 335  Q
    ||||||||||||||||||| |||||||||||||  ||||||||||||||||||    
T  17930470 caatttaacctaacaaattccctctaaaatgcagcaatccctaatatttctcc 17930418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 277 - 334
Target Start/End: Complemental strand, 41075816 - 41075759
Alignment:
Q  277 taacagcaatttaacctaacaaatttcctctaaaatgcaaaaatccctaatatttctc 334  Q
    ||||| |||||||||||||||||||  ||||||||||||  |||||||||||||||||    
T  41075816 taacaacaatttaacctaacaaattctctctaaaatgcagcaatccctaatatttctc 41075759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 277 - 334
Target Start/End: Complemental strand, 41076381 - 41076324
Alignment:
Q  277 taacagcaatttaacctaacaaatttcctctaaaatgcaaaaatccctaatatttctc 334  Q
    ||||| |||||||||||||||||||  ||||||||||||  |||||||||||||||||    
T  41076381 taacaacaatttaacctaacaaattctctctaaaatgcagcaatccctaatatttctc 41076324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 283 - 335
Target Start/End: Original strand, 11131355 - 11131407
Alignment:
Q  283 caatttaacctaacaaatttcctctaaaatgcaaaaatccctaatatttctcc 335  Q
    |||||||||||| |||||| |||||||||||||  ||||||||||||||||||    
T  11131355 caatttaacctatcaaattccctctaaaatgcagcaatccctaatatttctcc 11131407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 221 - 279
Target Start/End: Complemental strand, 15255888 - 15255830
Alignment:
Q  221 atccttatctattaattttattagatctgtaacaatttaaccttataatttccctctaa 279  Q
    |||||||| ||||||||| ||||| |||| ||||| ||||||| |||||||||||||||    
T  15255888 atccttatttattaatttaattaggtctgcaacaacttaacctaataatttccctctaa 15255830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 283 - 335
Target Start/End: Complemental strand, 38857799 - 38857747
Alignment:
Q  283 caatttaacctaacaaatttcctctaaaatgcaaaaatccctaatatttctcc 335  Q
    ||||||||||||| |||||  || |||||||||| ||||||||||||||||||    
T  38857799 caatttaacctaataaattctctttaaaatgcaacaatccctaatatttctcc 38857747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 219 - 279
Target Start/End: Complemental strand, 41076530 - 41076470
Alignment:
Q  219 gtatccttatctattaattttattagatctgtaacaatttaaccttataatttccctctaa 279  Q
    |||||||||| ||||||||||||||  |||| ||||| ||||||| |||||||| ||||||    
T  41076530 gtatccttatttattaattttattaagtctgcaacaacttaacctaataatttctctctaa 41076470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 220 - 263
Target Start/End: Original strand, 29550128 - 29550171
Alignment:
Q  220 tatccttatctattaattttattagatctgtaacaatttaacct 263  Q
    ||||||||| ||||||||||||||| |||| |||||||||||||    
T  29550128 tatccttatttattaattttattaggtctgcaacaatttaacct 29550171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 220 - 279
Target Start/End: Complemental strand, 38857913 - 38857854
Alignment:
Q  220 tatccttatctattaattttattagatctgtaacaatttaaccttataatttccctctaa 279  Q
    ||||||||| ||||||||||||||| ||| || ||| ||||| | |||||||||||||||    
T  38857913 tatccttatttattaattttattaggtctatagcaacttaacttaataatttccctctaa 38857854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 287 - 334
Target Start/End: Complemental strand, 41076089 - 41076042
Alignment:
Q  287 ttaacctaacaaatttcctctaaaatgcaaaaatccctaatatttctc 334  Q
    |||||||||||||||  ||||||||||||  |||||||||||||||||    
T  41076089 ttaacctaacaaattctctctaaaatgcagcaatccctaatatttctc 41076042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 221 - 263
Target Start/End: Complemental strand, 3249909 - 3249867
Alignment:
Q  221 atccttatctattaattttattagatctgtaacaatttaacct 263  Q
    |||||||| |||||||||| ||||||||| |||||||||||||    
T  3249909 atccttatttattaattttgttagatctgcaacaatttaacct 3249867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 221 - 275
Target Start/End: Complemental strand, 17930589 - 17930535
Alignment:
Q  221 atccttatctattaattttattagatctgtaacaatttaaccttataatttccct 275  Q
    |||||||| ||||||||||||||| |||| ||||| ||||||| |||||| ||||    
T  17930589 atccttatttattaattttattaggtctgcaacaacttaacctaataattcccct 17930535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 280 - 312
Target Start/End: Original strand, 11131313 - 11131345
Alignment:
Q  280 cagcaatttaacctaacaaatttcctctaaaat 312  Q
    |||||||||||||||||||||||| ||||||||    
T  11131313 cagcaatttaacctaacaaatttcatctaaaat 11131345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 283 - 335
Target Start/End: Complemental strand, 15256553 - 15256501
Alignment:
Q  283 caatttaacctaacaaatttcctctaaaatgcaaaaatccctaatatttctcc 335  Q
    |||||||| |||||||||  |||||||||||||  ||| ||||||||||||||    
T  15256553 caatttaaactaacaaataccctctaaaatgcagcaattcctaatatttctcc 15256501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 280 - 316
Target Start/End: Complemental strand, 17930512 - 17930476
Alignment:
Q  280 cagcaatttaacctaacaaatttcctctaaaatgcaa 316  Q
    |||||||||||||||||||||| | ||||||||||||    
T  17930512 cagcaatttaacctaacaaattccatctaaaatgcaa 17930476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 281 - 335
Target Start/End: Original strand, 12296005 - 12296059
Alignment:
Q  281 agcaatttaacctaacaaatttcctctaaaatgcaaaaatccctaatatttctcc 335  Q
    ||||||||||||||||||||| |||||||||||||  |||| |||||||||||||    
T  12296005 agcaatttaacctaacaaattccctctaaaatgcagcaatctctaatatttctcc 12296059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 284 - 334
Target Start/End: Original strand, 17201476 - 17201526
Alignment:
Q  284 aatttaacctaacaaatttcctctaaaatgcaaaaatccctaatatttctc 334  Q
    |||||||||||||||||| |||||||||||||  |||||||||||||||||    
T  17201476 aatttaacctaacaaattccctctaaaatgcagcaatccctaatatttctc 17201526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 283 - 335
Target Start/End: Complemental strand, 24223515 - 24223463
Alignment:
Q  283 caatttaacctaacaaatttcctctaaaatgcaaaaatccctaatatttctcc 335  Q
    |||||||||||| |||||| |||||||||||||  ||||||||||||||||||    
T  24223515 caatttaacctatcaaattccctctaaaatgcagcaatccctaatatttctcc 24223463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 219 - 279
Target Start/End: Complemental strand, 24223636 - 24223576
Alignment:
Q  219 gtatccttatctattaattttattagatctgtaacaatttaaccttataatttccctctaa 279  Q
    |||||||||| ||||||||||||||| |||| | ||| ||||||| |||||||||||||||    
T  24223636 gtatccttatttattaattttattaggtctgcagcaacttaacctaataatttccctctaa 24223576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 221 - 279
Target Start/End: Original strand, 12295927 - 12295985
Alignment:
Q  221 atccttatctattaattttattagatctgtaacaatttaaccttataatttccctctaa 279  Q
    |||||||| ||||||||||||||| |||| ||||| ||||||| || ||||||||||||    
T  12295927 atccttatttattaattttattaggtctgcaacaacttaacctaatgatttccctctaa 12295985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 285 - 335
Target Start/End: Complemental strand, 17079993 - 17079943
Alignment:
Q  285 atttaacctaacaaatttcctctaaaatgcaaaaatccctaatatttctcc 335  Q
    ||||||||||||||||| |||||||||||||  ||||| ||||||||||||    
T  17079993 atttaacctaacaaattccctctaaaatgcagcaatccttaatatttctcc 17079943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 221 - 277
Target Start/End: Original strand, 17199982 - 17200038
Alignment:
Q  221 atccttatctattaattttattagatctgtaacaatttaaccttataatttccctct 277  Q
    |||||||| |||||||||| |||| |||||| ||||||||||| ||| |||||||||    
T  17199982 atccttatttattaattttgttaggtctgtagcaatttaacctaatattttccctct 17200038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 283 - 335
Target Start/End: Complemental strand, 24223160 - 24223108
Alignment:
Q  283 caatttaacctaacaaatttcctctaaaatgcaaaaatccctaatatttctcc 335  Q
    |||||||||||| ||||||  ||||||||||||  ||||||||||||||||||    
T  24223160 caatttaacctatcaaattcactctaaaatgcagcaatccctaatatttctcc 24223108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 220 - 279
Target Start/End: Complemental strand, 16799622 - 16799563
Alignment:
Q  220 tatccttatctattaattttattagatctgtaacaatttaaccttataatttccctctaa 279  Q
    ||||||||| ||||||||||||||| |||| | ||| | ||||| |||||||||||||||    
T  16799622 tatccttatttattaattttattaggtctgcagcaactgaacctaataatttccctctaa 16799563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 280 - 315
Target Start/End: Original strand, 17200571 - 17200606
Alignment:
Q  280 cagcaatttaacctaacaaatttcctctaaaatgca 315  Q
    |||||||||||||||||||||||| |||||||||||    
T  17200571 cagcaatttaacctaacaaatttcatctaaaatgca 17200606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 232 - 279
Target Start/End: Original strand, 17203662 - 17203709
Alignment:
Q  232 ttaattttattagatctgtaacaatttaaccttataatttccctctaa 279  Q
    ||||||||||||| |||| ||||| ||||||| |||||||||||||||    
T  17203662 ttaattttattaggtctgcaacaacttaacctaataatttccctctaa 17203709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 283 - 333
Target Start/End: Complemental strand, 6601925 - 6601875
Alignment:
Q  283 caatttaacctaacaaatttcctctaaaatgcaaaaatccctaatatttct 333  Q
    |||||| |||||||||||| |||||||||||||  |||| |||||||||||    
T  6601925 caatttcacctaacaaattccctctaaaatgcagcaatctctaatatttct 6601875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 281 - 315
Target Start/End: Complemental strand, 16799544 - 16799510
Alignment:
Q  281 agcaatttaacctaacaaatttcctctaaaatgca 315  Q
    ||||||||||||||||||||||| |||||||||||    
T  16799544 agcaatttaacctaacaaatttcatctaaaatgca 16799510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 221 - 279
Target Start/End: Original strand, 17200320 - 17200378
Alignment:
Q  221 atccttatctattaattttattagatctgtaacaatttaaccttataatttccctctaa 279  Q
    |||||||| ||||||||||||||| |||| | ||| ||||||| ||||||||| |||||    
T  17200320 atccttatttattaattttattaggtctgcagcaacttaacctaataatttccttctaa 17200378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 220 - 277
Target Start/End: Complemental strand, 24223268 - 24223211
Alignment:
Q  220 tatccttatctattaattttattagatctgtaacaatttaaccttataatttccctct 277  Q
    ||||||||| ||||||||||||| | |||| | ||| ||||||| |||||||||||||    
T  24223268 tatccttatttattaattttatttggtctgcatcaacttaacctaataatttccctct 24223211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 283 - 333
Target Start/End: Original strand, 19553377 - 19553427
Alignment:
Q  283 caatttaacctaacaaatttcctctaaaatgcaaaaatccctaatatttct 333  Q
    ||||||||||||||||||| |||||||||||||  ||||||||||||||||    
T  19553377 caatttaacctaacaaattccctctaaaatgcagcaatccctaatatttct 19553427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 217 - 279
Target Start/End: Original strand, 46883329 - 46883391
Alignment:
Q  217 ttgtatccttatctattaattttattagatctgtaacaatttaaccttataatttccctctaa 279  Q
    |||||||||||| ||||||||||||||| |||| || || ||||||| |||||||||||||||    
T  46883329 ttgtatccttatttattaattttattaggtctgcaataacttaacctaataatttccctctaa 46883391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 284 - 335
Target Start/End: Original strand, 9711335 - 9711385
Alignment:
Q  284 aatttaacctaacaaatttcctctaaaatgcaaaaatccctaatatttctcc 335  Q
    |||||||||||||||||||| |||||||||||| |||  |||||||||||||    
T  9711335 aatttaacctaacaaatttcatctaaaatgcaacaat-tctaatatttctcc 9711385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 283 - 330
Target Start/End: Complemental strand, 29013843 - 29013796
Alignment:
Q  283 caatttaacctaacaaatttcctctaaaatgcaaaaatccctaatatt 330  Q
    ||||||||| ||||||||| |||||||||||||  |||||||||||||    
T  29013843 caatttaacttaacaaattccctctaaaatgcagcaatccctaatatt 29013796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 220 - 275
Target Start/End: Complemental strand, 47428352 - 47428297
Alignment:
Q  220 tatccttatctattaattttattagatctgtaacaatttaaccttataatttccct 275  Q
    ||||||||| |||||||||| ||||||||  ||||||||||||| ||| |||||||    
T  47428352 tatccttatttattaattttgttagatctacaacaatttaacctaatattttccct 47428297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 280 - 334
Target Start/End: Original strand, 46883410 - 46883466
Alignment:
Q  280 cagcaatttaacctaacaaatttcctc--taaaatgcaaaaatccctaatatttctc 334  Q
    |||||||||||||||||||||| ||||  |||||||||  |||||||| ||||||||    
T  46883410 cagcaatttaacctaacaaattacctctttaaaatgcagcaatccctattatttctc 46883466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.000000000008; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 283 - 335
Target Start/End: Original strand, 11928311 - 11928363
Alignment:
Q  283 caatttaacctaacaaatttcctctaaaatgcaaaaatccctaatatttctcc 335  Q
    |||||||||||||||| || |||||||||||||  ||||||||||||||||||    
T  11928311 caatttaacctaacaatttccctctaaaatgcagcaatccctaatatttctcc 11928363  T

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Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 283 - 335
Target Start/End: Original strand, 41460966 - 41461018
Alignment:
Q  283 caatttaacctaacaaatttcctctaaaatgcaaaaatccctaatatttctcc 335  Q
    |||||||||||| |||||| |||||||||||||  ||||||||||||||||||    
T  41460966 caatttaacctatcaaattccctctaaaatgcagcaatccctaatatttctcc 41461018  T

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Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 283 - 335
Target Start/End: Original strand, 49484051 - 49484103
Alignment:
Q  283 caatttaacctaacaaatttcctctaaaatgcaaaaatccctaatatttctcc 335  Q
    |||||||||||||||||||  |||||| |||||| ||||||||||||||||||    
T  49484051 caatttaacctaacaaattctctctaacatgcaacaatccctaatatttctcc 49484103  T

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Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 283 - 334
Target Start/End: Original strand, 52740982 - 52741033
Alignment:
Q  283 caatttaacctaacaaatttcctctaaaatgcaaaaatccctaatatttctc 334  Q
    ||||||||||||||||||||| | |||||||||  |||||||||||||||||    
T  52740982 caatttaacctaacaaatttcatttaaaatgcagcaatccctaatatttctc 52741033  T

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Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 283 - 335
Target Start/End: Original strand, 46533030 - 46533082
Alignment:
Q  283 caatttaacctaacaaatttcctctaaaatgcaaaaatccctaatatttctcc 335  Q
    |||||||||||||||||||  ||||||||||| | ||||| ||||||||||||    
T  46533030 caatttaacctaacaaattatctctaaaatgctacaatccataatatttctcc 46533082  T

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Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 293 - 335
Target Start/End: Complemental strand, 23482630 - 23482588
Alignment:
Q  293 taacaaatttcctctaaaatgcaaaaatccctaatatttctcc 335  Q
    |||||||||||||||||||||||  |||| |||||||||||||    
T  23482630 taacaaatttcctctaaaatgcagcaatctctaatatttctcc 23482588  T

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Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 220 - 261
Target Start/End: Complemental strand, 6537541 - 6537500
Alignment:
Q  220 tatccttatctattaattttattagatctgtaacaatttaac 261  Q
    ||||||||| |||||||||| |||| ||||||||||||||||    
T  6537541 tatccttatttattaattttgttaggtctgtaacaatttaac 6537500  T

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Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 283 - 335
Target Start/End: Original strand, 41462629 - 41462681
Alignment:
Q  283 caatttaacctaacaaatttcctctaaaatgcaaaaatccctaatatttctcc 335  Q
    |||||||||||| |||| | ||||||||||| |  ||||||||||||||||||    
T  41462629 caatttaacctatcaaactccctctaaaatgtagcaatccctaatatttctcc 41462681  T

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Target: scaffold0368 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0368
Description:

Target: scaffold0368; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 283 - 330
Target Start/End: Complemental strand, 326 - 279
Alignment:
Q  283 caatttaacctaacaaatttcctctaaaatgcaaaaatccctaatatt 330  Q
    ||||||||||||||||||| ||| |||||||||  |||||||||||||    
T  326 caatttaacctaacaaattccctataaaatgcagcaatccctaatatt 279  T

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