View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2862_high_1 (Length: 600)
Name: NF2862_high_1
Description: NF2862
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2862_high_1 |
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Alignment Details
Target: chr8 (Bit Score: 527; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 527; E-Value: 0
Query Start/End: Original strand, 11 - 581
Target Start/End: Complemental strand, 12725969 - 12725399
Alignment:
| Q |
11 |
cacagacacaacaataggagttttcaggagaagagttaccaatgtaggtcctggaccgaccatctttaatgccaccatcaaatctccaaaaggagtggaa |
110 |
Q |
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| T |
12725969 |
cacagacacaacaataggagttttcaggagaagagttaccaatgtaggtcctggacaaaccatctttaatgccaccatcaaatctccaaaaggagtggaa |
12725870 |
T |
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| Q |
111 |
attacagtgaagcctactagtctcattttctctcacaccttgcaaaagaggagcttcaaggtagttgtgaaagcaaaatctatggcaagtatgaaaattg |
210 |
Q |
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| T |
12725869 |
attacagtgaagcctactagtctcattttctctcacaccttgcaaaagaggagcttcaaggtagttgtgaaagcaaaatctatggcaagtatgaaaattg |
12725770 |
T |
|
| Q |
211 |
tatcagcttcccttatttggagaagccctcgttatatcgtaagaagccctattgttatctacagtccgtaaagttacaattaacagtggaaaaagtcaag |
310 |
Q |
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| T |
12725769 |
tatcagcttcccttatttggagaagccctcgttatatcgttagaagccctattgttatctacagtccgtaaagttacaattaacagtggaaaaagtcaag |
12725670 |
T |
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| Q |
311 |
cttgtagcattgcctgataacatgtttaacacttctatcaattcttttgcttaatgtttacattttcatcccacaatattgactcgatgaattgtgtaat |
410 |
Q |
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| T |
12725669 |
cttgtagcgttgcctgttaacatgtttaacacttctatcaattcttttgcttaatgtttacattttcatcccacaatattgactcgatgaattgtgtatg |
12725570 |
T |
|
| Q |
411 |
gatttaaatttactcttgagaatagagaaaatgagctgagtaaacatggcaatcaatatcaataaaaatcacatctcacatgctactgacttgtgttgca |
510 |
Q |
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| T |
12725569 |
gatttaaatttactcttgagaatagagaaaataagctgagtaaacatggcaatcaatatcaataaaaattacatcttacatgctactgacttgtgttgca |
12725470 |
T |
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| Q |
511 |
tcagaactaattatttccttggaatcttttagccctccctttgcctctttttagctcttatatttatgacc |
581 |
Q |
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| T |
12725469 |
tcagaactaattatttccttggaatcttttagccctccttttgcctctttttagctcttatatttatgacc |
12725399 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 19 - 316
Target Start/End: Original strand, 34294478 - 34294775
Alignment:
| Q |
19 |
caacaataggagttttcaggagaagagttaccaatgtaggtcctggaccgaccatctttaatgccaccatcaaatctccaaaaggagtggaaattacagt |
118 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| || || | |||||| ||||| ||||| |||||||| |||||||||||||| |
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| T |
34294478 |
caacaataggagttttcaggagaagagttaccaatgtaggtcctggaccaacaatgtataatgctaccattaaatcaccaaaaggtgtggaaattacagt |
34294577 |
T |
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| Q |
119 |
gaagcctactagtctcattttctctcacaccttgcaaaagaggagcttcaaggtagttgtgaaagcaaaatctatggcaagtatgaaaattgtatcagct |
218 |
Q |
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| T |
34294578 |
gaagcctactagcttgattttctatcataccctgcagaaaaagaacttcaaggtagttgtgaaagcaaaatctatggcaagcatgaaaattgtatcaggt |
34294677 |
T |
|
| Q |
219 |
tcccttatttggagaagccctcgttatatcgtaagaagccctattgttatctacagtccgtaaagttacaattaacagtggaaaaagtcaagcttgta |
316 |
Q |
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|| ||||||||||||| ||||||||| || || |||||||||||||||||||| ||| | |||||| |||||||| ||||| ||| ||||||||||| |
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| T |
34294678 |
tcacttatttggagaaaccctcgttacattgttagaagccctattgttatctatagttcataaagtaacaattaatagtggccaaaatcaagcttgta |
34294775 |
T |
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