View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2862_high_1_N (Length: 584)
Name: NF2862_high_1_N
Description: NF2862
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2862_high_1_N |
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Alignment Details
Target: chr8 (Bit Score: 524; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 524; E-Value: 0
Query Start/End: Original strand, 2 - 569
Target Start/End: Original strand, 12725399 - 12725966
Alignment:
| Q |
2 |
ggtcataaatataagagctaaaaagaggcaaagggagggctaaaagattccaaggaaataattagttctgatgcaacacaagtcagtagcatgtgagatg |
101 |
Q |
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| T |
12725399 |
ggtcataaatataagagctaaaaagaggcaaaaggagggctaaaagattccaaggaaataattagttctgatgcaacacaagtcagtagcatgtaagatg |
12725498 |
T |
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| Q |
102 |
tgatttttattgatattgattgccatgtttactcagctcattttctctattctcaagagtaaatttaaatcattacacaattcatcgagtcaatattgtg |
201 |
Q |
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| T |
12725499 |
taatttttattgatattgattgccatgtttactcagcttattttctctattctcaagagtaaatttaaatccatacacaattcatcgagtcaatattgtg |
12725598 |
T |
|
| Q |
202 |
ggatgaaaatgtaaacattaagcaaaagaattgatagaagtgttaaacatgttatcaggcaatgctacaagcttgactttttccactgttaattgtaact |
301 |
Q |
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| T |
12725599 |
ggatgaaaatgtaaacattaagcaaaagaattgatagaagtgttaaacatgttaacaggcaacgctacaagcttgactttttccactgttaattgtaact |
12725698 |
T |
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| Q |
302 |
ttacggactgtagataacaatagggcttcttacgatataacgagggcttctccaaataagggaagctgatacaattttcatacttgccatagattttgct |
401 |
Q |
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| T |
12725699 |
ttacggactgtagataacaatagggcttctaacgatataacgagggcttctccaaataagggaagctgatacaattttcatacttgccatagattttgct |
12725798 |
T |
|
| Q |
402 |
ttcacaactaccttgaagctcctcttttgcaaggtgtgagagaaaatgagactagtaggcttcactgtaatttccactccttttggagatttgatggtgg |
501 |
Q |
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| T |
12725799 |
ttcacaactaccttgaagctcctcttttgcaaggtgtgagagaaaatgagactagtaggcttcactgtaatttccactccttttggagatttgatggtgg |
12725898 |
T |
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| Q |
502 |
cattaaagatggtcggtccaggacctacattggtaactcttctcctgaaaactcctattgttgtgtct |
569 |
Q |
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| T |
12725899 |
cattaaagatggtttgtccaggacctacattggtaactcttctcctgaaaactcctattgttgtgtct |
12725966 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 267 - 564
Target Start/End: Complemental strand, 34294775 - 34294478
Alignment:
| Q |
267 |
tacaagcttgactttttccactgttaattgtaactttacggactgtagataacaatagggcttcttacgatataacgagggcttctccaaataagggaag |
366 |
Q |
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| T |
34294775 |
tacaagcttgattttggccactattaattgttactttatgaactatagataacaatagggcttctaacaatgtaacgagggtttctccaaataagtgaac |
34294676 |
T |
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| Q |
367 |
ctgatacaattttcatacttgccatagattttgctttcacaactaccttgaagctcctcttttgcaaggtgtgagagaaaatgagactagtaggcttcac |
466 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||| || | || |||| ||| ||| ||||||| | |||||||||||||| |
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| T |
34294675 |
ctgatacaattttcatgcttgccatagattttgctttcacaactaccttgaagttctttttctgcagggtatgatagaaaatcaagctagtaggcttcac |
34294576 |
T |
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| Q |
467 |
tgtaatttccactccttttggagatttgatggtggcattaaagatggtcggtccaggacctacattggtaactcttctcctgaaaactcctattgttg |
564 |
Q |
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| T |
34294575 |
tgtaatttccacaccttttggtgatttaatggtagcattatacattgttggtccaggacctacattggtaactcttctcctgaaaactcctattgttg |
34294478 |
T |
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