View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2862_high_2 (Length: 534)
Name: NF2862_high_2
Description: NF2862
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2862_high_2 |
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Alignment Details
Target: chr2 (Bit Score: 158; Significance: 8e-84; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 158; E-Value: 8e-84
Query Start/End: Original strand, 299 - 493
Target Start/End: Original strand, 7424454 - 7424650
Alignment:
| Q |
299 |
catttaaattttactaaatcattaggttaagttgttaactgcnnnnnnnntcgttgttggtgtttgtcaaatgagtgatttttgtcgttcaagcaactat |
398 |
Q |
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| T |
7424454 |
catttaaattttactaaatcattaggttaagttgttaactgcaaaaaaaatagttgttggtgtttgtcaaatgagtgatttttgtcgttcaagcaactat |
7424553 |
T |
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| Q |
399 |
gccaacatagtctgattccaaaaatgaaaatgc--tatagcgtggactactagcgaagacaaccctccttgaatatgagattttactacaataagtt |
493 |
Q |
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| T |
7424554 |
gccaacatagtctgattccaaaaatgaaaatgctatatagcgtggactactagcgaagacaaccctccttgaatatgagattttactacaataagtt |
7424650 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 96; E-Value: 8e-47
Query Start/End: Original strand, 1 - 151
Target Start/End: Original strand, 7423759 - 7423914
Alignment:
| Q |
1 |
aaatttatactttggctcctgatatatatatatt----ggtataattttagatttatatcaacgatagtttannnnnnnnn-acgttaatgtttagttct |
95 |
Q |
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| T |
7423759 |
aaatttatactttggctcctgatatatatatattatatggtataattttagatttatatcaacgattgtttatttattttttacgttaatgtttagttct |
7423858 |
T |
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| Q |
96 |
acaatctttccaccctttgacacacgcctatgtggcaaaatgctacgactcagctt |
151 |
Q |
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| T |
7423859 |
acaatctttccaccctttgacacacgcctatgtggcaaaatgctatgactcagctt |
7423914 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 178 - 262
Target Start/End: Original strand, 7423940 - 7424024
Alignment:
| Q |
178 |
catggagaacgaaaacagggaaggtttgagaaagaggaagagacatcatggccttctccgttgccataacattcattcatccatc |
262 |
Q |
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| T |
7423940 |
catggagaacgaaaacagggaaggtttgagaaagaggaagagacatcatggccttctccgttgccataacattcattcatccatc |
7424024 |
T |
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