View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2862_high_3 (Length: 475)
Name: NF2862_high_3
Description: NF2862
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2862_high_3 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 360; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 76 - 475
Target Start/End: Original strand, 50111801 - 50112199
Alignment:
| Q |
76 |
gtatgaccaactgcattctgaaatgcatttatgtacaccatggatatgttcaagtttgtcgaaataacagtgtgtcaccctgatttcggtacactttaaa |
175 |
Q |
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| T |
50111801 |
gtatgaccaactgcattctgaaatgcatttatgtacaccatggatatgttcaagtttgtcgaaatcacagtgtgtcaccctgatttcggtacactttaaa |
50111900 |
T |
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| Q |
176 |
gctcggttttaattcatactaattaaaatagtaaaattgaatatgcaatgcaatgcagcacagtgatatgatataaagaggctgtgaaaagtgaatcata |
275 |
Q |
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| T |
50111901 |
gctcggttttaattcatactaattaaaatagtaaaattgaatatgcaatgcaatgcagcacagtgatatgatataa-gaggttgtgaaaagtgaatcata |
50111999 |
T |
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| Q |
276 |
ccaaaagcccagtaaggcattggagctggtcttccaatgaaggatgtgtactgatcaacaacactaagaggcgtgggtcctgcaaagaagtaaaaatcaa |
375 |
Q |
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| T |
50112000 |
ccaaaagcccagtaaggcattggagctggtcttccaatgaaggatgtgtactgatcaacaacactaagaggcgtgggtcctgcaaagaagtaaaaatcaa |
50112099 |
T |
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| Q |
376 |
gtattcctccaataatcttgtatgtcaaagagttccctttgtaaaacacatccattccattgctattcaacaaaagaacaccatgtgcattaggcttgcc |
475 |
Q |
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| T |
50112100 |
gtacccctccaataatcttgtacgtcaaagaggtccctttgtaaaacacatccattccattgctattcaacaacaaaacaccatgtgcattaggcttgcc |
50112199 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 259 - 465
Target Start/End: Original strand, 50121564 - 50121770
Alignment:
| Q |
259 |
gtgaaaagtgaatcataccaaaagcccagtaaggcattggagctggtcttccaatgaaggatgtgtactgatcaacaacactaagaggcgtgggtcctgc |
358 |
Q |
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| T |
50121564 |
gtgaaaagtgaatcataccaaaagcccaataaggcattggagctggtcttccaatgaaggatgtgtactgatcaacaacattcagaggcgtaggtcctgc |
50121663 |
T |
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| Q |
359 |
aaagaagtaaaaatcaagtattcctccaataatcttgtatgtcaaagagttccctttgtaaaacacatccattccattgctattcaacaaaagaacacca |
458 |
Q |
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| T |
50121664 |
aaagaagtaaaaatcaagtattcctccaataatcttgtatgtcaaagagttccctttgtaaaacacatccattccattgctattcaacaaaagaacacca |
50121763 |
T |
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| Q |
459 |
tgtgcat |
465 |
Q |
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| T |
50121764 |
tgtgcat |
50121770 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 68; Significance: 4e-30; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 269 - 464
Target Start/End: Complemental strand, 23931210 - 23931015
Alignment:
| Q |
269 |
aatcataccaaaagcccagtaaggcattggagctggtcttccaatgaaggatgtgtactgatcaacaacactaagaggcgtgggtcctgcaaagaagtaa |
368 |
Q |
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||||||||||||||||||||||||||| | ||||||||||||||| || | || ||||||||||| ||| | | ||| || ||||| | ||||||||| |
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| T |
23931210 |
aatcataccaaaagcccagtaaggcatagcagctggtcttccaatcaaagtagtatactgatcaaccacattcaaaggagttggtccagagaagaagtaa |
23931111 |
T |
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| Q |
369 |
aaatcaagtattcctccaataatcttgtatgtcaaagagttccctttgtaaaacacatccattccattgctattcaacaaaagaacaccatgtgca |
464 |
Q |
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| T |
23931110 |
aaatcaaaaacaccaccaataaccttataagtcaaagaagttcctttataaaacacatccattccattactattcaacaacaaaacagcatgtgca |
23931015 |
T |
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