View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2862_high_5 (Length: 347)
Name: NF2862_high_5
Description: NF2862
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2862_high_5 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 120; Significance: 2e-61; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 66 - 197
Target Start/End: Original strand, 12819154 - 12819285
Alignment:
| Q |
66 |
tgttaaaaatatataagacacccaataaaatcgagagtgggaaaacattcaaagagagattttcttttagtatatagatatagaccatattttctgcact |
165 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
12819154 |
tgttaaaaatatataagacacccaatgaaatcgagagtgggaaaacattcaaagagagattttcttatagtatatagatatagaccatattttctgcact |
12819253 |
T |
|
| Q |
166 |
attttcctgaaaacaaaagttggtgaaagcaa |
197 |
Q |
| |
|
|||||| ||||||||||||||||||||||||| |
|
|
| T |
12819254 |
attttcttgaaaacaaaagttggtgaaagcaa |
12819285 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 206 - 335
Target Start/End: Original strand, 12819336 - 12819465
Alignment:
| Q |
206 |
aaactcaacaggtcatgcaaagatatcagaaaagcaatataaggaacaatgtcaaaggaccacgacattcttcgtatgaatcagttatcattatccattg |
305 |
Q |
| |
|
|||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||| |
|
|
| T |
12819336 |
aaactcaacaggtcctgcaaagatctcagaaaagcaatataaggaacaatgtcaaaggaccacggcattcttcgtatgaatcagttatcattatcaattg |
12819435 |
T |
|
| Q |
306 |
aggtatgtatcatagagtactgtgcagtat |
335 |
Q |
| |
|
||||||||||||||| ||||| |||||||| |
|
|
| T |
12819436 |
aggtatgtatcatagcgtactatgcagtat |
12819465 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 12819106 - 12819138
Alignment:
| Q |
1 |
attatggtaaagaagtccctagattcttgcaaa |
33 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
12819106 |
attatggtaaagaagtccctagattcttgcaaa |
12819138 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University