View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2863_high_3 (Length: 278)
Name: NF2863_high_3
Description: NF2863
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2863_high_3 |
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Alignment Details
Target: chr2 (Bit Score: 51; Significance: 3e-20; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 34 - 123
Target Start/End: Complemental strand, 44262665 - 44262575
Alignment:
| Q |
34 |
attagaataatcatattccaatccatccgataactgaaatgggacttaaa-atacacatacatcccaccaattagtaacataacaaaccaa |
123 |
Q |
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| T |
44262665 |
attagagtaattctattcctatccatccgataactgaaatgggacttaaagatacacatacatcccatcaattaatggcataacaaaccaa |
44262575 |
T |
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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 211 - 267
Target Start/End: Complemental strand, 44261926 - 44261870
Alignment:
| Q |
211 |
gctaacaatagtttcactagtgaaactccagacgacatcccttcttccacatcactt |
267 |
Q |
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| T |
44261926 |
gctaacaatagtcgcactagtggaactccagatgaaattccttcttccagatcactt |
44261870 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 7 - 41
Target Start/End: Complemental strand, 56165215 - 56165181
Alignment:
| Q |
7 |
tattatccattcaataacttcgcaaaaattagaat |
41 |
Q |
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| T |
56165215 |
tattatccattcaataacttcgcaaaaattagaat |
56165181 |
T |
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