View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2863_low_1 (Length: 508)
Name: NF2863_low_1
Description: NF2863
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2863_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 475; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 475; E-Value: 0
Query Start/End: Original strand, 11 - 493
Target Start/End: Complemental strand, 39252314 - 39251832
Alignment:
| Q |
11 |
cacagaatttaataaacttgatttaataatttattttatcagacccaagtaataaccaagggtgggcgggcaaaaaacaaattaattaataataggtaga |
110 |
Q |
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| T |
39252314 |
cacagaatttaataaacttgatttaataatttattttatcagacccaagtaataaccaagggtgggcgggcaaaaaacaaattaattaataataggtaga |
39252215 |
T |
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| Q |
111 |
tattacataatagatgagagttctcttttaacaaatctttcttataaaatagaatagtagaacaccctacaactttctaagagtttcatctgcccatttc |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39252214 |
tattacataatagatgagagttctcttttaacaaatctttcttataaaatagaatagtagaacaccctacaactttctaagagtttcatctgcccatttc |
39252115 |
T |
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| Q |
211 |
ttgataaagcttgcctccaaaacccttctttctttcctttttgatagatggaagcacgatataatacggctgaagctgaacaaaaatatggccgagtgaa |
310 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39252114 |
ttgataaagcttgcctccaaaacccttctttctatcctttttgatagatggaagcacgatataatacggctgaagctgaacaaaaatatggccgagtgaa |
39252015 |
T |
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| Q |
311 |
cttgtgtttcttacgttatacccttctccaatccagtgatagggattcggccacaaaccgacatgccagtaaactttagaggaaatcaaagaacaaaaaa |
410 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39252014 |
cttgtgtttcttacgttatacccttctccaatccagtgatagggattcggccacaagccgacatgccagtaaactttagaggaaatcaaagaacaaaaaa |
39251915 |
T |
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| Q |
411 |
ctttacaaaaactaaaaccatcaagaaatgatggtgatattatgatatttcattaagttaaaatggttttctatcattctaat |
493 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39251914 |
ctttacaaaaactaaaaccatcaagaaatgatggtgatattatgatatttcattaagttaaaatggttttctatcattctaat |
39251832 |
T |
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