View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2863_low_2 (Length: 353)
Name: NF2863_low_2
Description: NF2863
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2863_low_2 |
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| [»] chr4 (4 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 237; Significance: 1e-131; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 109 - 353
Target Start/End: Complemental strand, 39047869 - 39047625
Alignment:
| Q |
109 |
ttggaggtagtataatcttactgtgagtggttttctgttaactcacgaagctccttcaagcatgggtgctctcttggaaacacactggtctcaagtatat |
208 |
Q |
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| T |
39047869 |
ttggaggtagtataatcttactgtgagtggttttctgttaactcacgaagctccttcaagcatgggtgctctcttggaaacacactggtctcaagtatat |
39047770 |
T |
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| Q |
209 |
actgcacaatatatataatacaagatatgaaatttgatgtgtcaattttgtttattaaatcaaaatagatatataattgtagagagtgaatatatatact |
308 |
Q |
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| T |
39047769 |
actgcacaatatatataatgcaagatatgaaatttgatgtgtcaattttctttattaaatcaaaatagatatataattgtagagagtgaatatatatact |
39047670 |
T |
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| Q |
309 |
tcatatagtgcatcactctgaagcagagacttgtgaactaaatct |
353 |
Q |
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| T |
39047669 |
tcatatagtgcatcactctgaagcagagacttgtgaactaaatct |
39047625 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 118 - 217
Target Start/End: Complemental strand, 39235520 - 39235421
Alignment:
| Q |
118 |
gtataatcttactgtgagtggttttctgttaactcacgaagctccttcaagcatgggtgctctcttggaaacacactggtctcaagtatatactgcacaa |
217 |
Q |
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| T |
39235520 |
gtatgatcttaccgagggtgtttttctgtcatctcacggagctccttcaagcaagggtgttctcttggaaacacacttgtgtcaagtatatactgcacaa |
39235421 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 156 - 219
Target Start/End: Original strand, 39292542 - 39292605
Alignment:
| Q |
156 |
aagctccttcaagcatgggtgctctcttggaaacacactggtctcaagtatatactgcacaata |
219 |
Q |
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| T |
39292542 |
aagctccttcaagcatgggtgttctcttggaaacacgcttgtttcaagtatatactgcacaata |
39292605 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 139 - 217
Target Start/End: Complemental strand, 39053841 - 39053763
Alignment:
| Q |
139 |
ttttctgttaactcacgaagctccttcaagcatgggtgctctcttggaaacacactggtctcaagtatatactgcacaa |
217 |
Q |
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| T |
39053841 |
ttttctgtcatctcacgaagctccttcaagcaagggtgttcatttggaaacacacttgtgtcaagtatatactgcacaa |
39053763 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 52; Significance: 9e-21; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 118 - 217
Target Start/End: Complemental strand, 7562863 - 7562764
Alignment:
| Q |
118 |
gtataatcttactgtgagtggttttctgttaactcacgaagctccttcaagcatgggtgctctcttggaaacacactggtctcaagtatatactgcacaa |
217 |
Q |
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| T |
7562863 |
gtatgatcttaccgagggtgtttttctgtcatctcacggagctccttcaagcaagggtgttctcttggaaacacacttgtgtcaagtatatactgcacaa |
7562764 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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