View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2863_low_4 (Length: 276)

Name: NF2863_low_4
Description: NF2863
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2863_low_4
NF2863_low_4
[»] chr1 (11 HSPs)
chr1 (1-263)||(13130828-13131090)
chr1 (1-263)||(13162521-13162783)
chr1 (1-263)||(13095399-13095661)
chr1 (105-263)||(13214577-13214735)
chr1 (105-263)||(13008289-13008447)
chr1 (105-263)||(13102089-13102247)
chr1 (104-238)||(13005922-13006056)
chr1 (45-171)||(30367127-30367253)
chr1 (105-251)||(13205560-13205706)
chr1 (107-263)||(13069121-13069277)
chr1 (119-243)||(19278109-19278233)
[»] chr6 (2 HSPs)
chr6 (45-147)||(31376542-31376644)
chr6 (103-131)||(31385340-31385368)


Alignment Details
Target: chr1 (Bit Score: 207; Significance: 1e-113; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 263
Target Start/End: Original strand, 13130828 - 13131090
Alignment:
Q  1 actacctccaagaacttcaaaaatgtcatgatattttgaccctttcccgtagttgccacaattcttctttgtgatgtagttcacgttcatttgatcagct 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13130828 actacctccaagaacttcaaaaatgtcatgatattttgaccctttcctgtagttgccacaattcttctttgtgatgtagttcacgttcatttgatcagct 13130927  T
Q  101 agagcgataaagcttgtgtttgtgaaccagggcccttgatatcgaaaagttcctcgatgacgcttcaaaacaatggttgcataatcatggaaatcggaga 200  Q
    ||||||||||||||||||||||||||||||||||||||| ||||| ||||||||| || |||||||||||||||||||| |||||||||| |||||||||    
T  13130928 agagcgataaagcttgtgtttgtgaaccagggcccttgaaatcgacaagttcctccataacgcttcaaaacaatggttgaataatcatggtaatcggaga 13131027  T
Q  201 gatgacgcaaaaatgttggtagcataccaattattggccaattaattggtacaaattcatctc 263  Q
    |||||| ||||||||  ||||| |||||||||||||||||||||||| ||| || ||||||||    
T  13131028 gatgacacaaaaatgacggtagtataccaattattggccaattaattagtaaaagttcatctc 13131090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 263
Target Start/End: Original strand, 13162521 - 13162783
Alignment:
Q  1 actacctccaagaacttcaaaaatgtcatgatattttgaccctttcccgtagttgccacaattcttctttgtgatgtagttcacgttcatttgatcagct 100  Q
    |||||||||||||||||||||||| |||||  |||||||||||||| ||||||||||| |||||||||||||||||||  ||||||||||| ||||||||    
T  13162521 actacctccaagaacttcaaaaatatcatggaattttgaccctttcgcgtagttgccaaaattcttctttgtgatgtatgtcacgttcattggatcagct 13162620  T
Q  101 agagcgataaagcttgtgtttgtgaaccagggcccttgatatcgaaaagttcctcgatgacgcttcaaaacaatggttgcataatcatggaaatcggaga 200  Q
    ||| ||| |||||||||||||||||||||||| |||||| ||||| ||||||||| || |||||||||||||||||||||||||||||||||||||||||    
T  13162621 agaccgacaaagcttgtgtttgtgaaccagggtccttgaaatcgataagttcctccattacgcttcaaaacaatggttgcataatcatggaaatcggaga 13162720  T
Q  201 gatgacgcaaaaatgttggtagcataccaattattggccaattaattggtacaaattcatctc 263  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13162721 gatgatgcaaaaatgttggtagcataccaattattggccaattaattggtacaaattcatctc 13162783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 1 - 263
Target Start/End: Original strand, 13095399 - 13095661
Alignment:
Q  1 actacctccaagaacttcaaaaatgtcatgatattttgaccctttcccgtagttgccacaattcttctttgtgatgtagttcacgttcatttgatcagct 100  Q
    |||||||||||||||||||||||| |||||  |||||||||||||| |||||||||||  |||||||||||||||||||| |||||||||| ||||||||    
T  13095399 actacctccaagaacttcaaaaatatcatggaattttgaccctttcgcgtagttgccaacattcttctttgtgatgtagtccacgttcattggatcagct 13095498  T
Q  101 agagcgataaagcttgtgtttgtgaaccagggcccttgatatcgaaaagttcctcgatgacgcttcaaaacaatggttgcataatcatggaaatcggaga 200  Q
    ||| ||||||||||| |||  |||||||||||||||| |  | |||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||    
T  13095499 agaccgataaagcttatgtcagtgaaccagggccctttaattagaaaagttcctccatggcgcttcaaaacaatggttgcataatcatggaaatcggaga 13095598  T
Q  201 gatgacgcaaaaatgttggtagcataccaattattggccaattaattggtacaaattcatctc 263  Q
    ||||| |||||||||  ||||||||||||||||||||||||||||||||||||||||||||||    
T  13095599 gatgatgcaaaaatgccggtagcataccaattattggccaattaattggtacaaattcatctc 13095661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 105 - 263
Target Start/End: Original strand, 13214577 - 13214735
Alignment:
Q  105 cgataaagcttgtgtttgtgaaccagggcccttgatatcgaaaagttcctcgatgacgcttcaaaacaatggttgcataatcatggaaatcggagagatg 204  Q
    |||||||||||||||||||||||||||  |  | | |||||||  |||||| |||| | |||||||| | ||||| |||||||||||||| ||| ||  |    
T  13214577 cgataaagcttgtgtttgtgaaccaggctcactcaaatcgaaacattcctccatgatgtttcaaaactaaggttgtataatcatggaaattggacagggg 13214676  T
Q  205 acgcaaaaatgttggtagcataccaattattggccaattaattggtacaaattcatctc 263  Q
    ||||||||  || |||||||||||||||||||||||||| |||||||||| ||||||||    
T  13214677 acgcaaaatcgtcggtagcataccaattattggccaattgattggtacaatttcatctc 13214735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 105 - 263
Target Start/End: Original strand, 13008289 - 13008447
Alignment:
Q  105 cgataaagcttgtgtttgtgaaccagggcccttgatatcgaaaagttcctcgatgacgcttcaaaacaatggttgcataatcatggaaatcggagagatg 204  Q
    ||||||||||||||||||||||||| |  |||| | ||||||| ||||||| |||| | |||||||  | ||||| || ||||||||||| ||| || ||    
T  13008289 cgataaagcttgtgtttgtgaaccaagctccttcaaatcgaaatgttcctccatgatgtttcaaaaataaggttgtatgatcatggaaattggacaggtg 13008388  T
Q  205 acgcaaaaatgttggtagcataccaattattggccaattaattggtacaaattcatctc 263  Q
    | ||||||     ||||||||||||||||||||||||||||||||| ||||||||||||    
T  13008389 atgcaaaatcccaggtagcataccaattattggccaattaattggtgcaaattcatctc 13008447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 105 - 263
Target Start/End: Original strand, 13102089 - 13102247
Alignment:
Q  105 cgataaagcttgtgtttgtgaaccagggcccttgatatcgaaaagttcctcgatgacgcttcaaaacaatggttgcataatcatggaaatcggagagatg 204  Q
    |||||||||  ||||||||||||||||  |||| | ||||||| ||||||| |||| | || ||||| | ||||| || ||||||||||| ||| || ||    
T  13102089 cgataaagccagtgtttgtgaaccaggctccttcaaatcgaaacgttcctccatgatgttttaaaactaaggttgtatgatcatggaaattggacaggtg 13102188  T
Q  205 acgcaaaaatgttggtagcataccaattattggccaattaattggtacaaattcatctc 263  Q
    ||||||||  | ||||||||||||||||||||||||||| ||||||| || ||||||||    
T  13102189 acgcaaaagcgctggtagcataccaattattggccaattgattggtaaaatttcatctc 13102247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 104 - 238
Target Start/End: Original strand, 13005922 - 13006056
Alignment:
Q  104 gcgataaagcttgtgtttgtgaaccagggcccttgatatcgaaaagttcctcgatgacgcttcaaaacaatggttgcataatcatggaaatcggagagat 203  Q
    |||||||||||||| |||||| | ||||||||||   ||||||||||||||| |||| |||| ||||||| ||||||||||||||| |||| ||| ||||    
T  13005922 gcgataaagcttgtatttgtgtatcagggcccttcgaatcgaaaagttcctccatgatgctttaaaacaaaggttgcataatcatgtaaattggatagat 13006021  T
Q  204 gacgcaaaaatgttggtagcataccaattattggc 238  Q
    ||| ||||||  | |||||||||||| ||| ||||    
T  13006022 gactcaaaaacctcggtagcataccatttactggc 13006056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 45 - 171
Target Start/End: Complemental strand, 30367253 - 30367127
Alignment:
Q  45 tcccgtagttgccacaattcttctttgtgatgtagttcacgttcatttgatcagctagagcgataaagcttgtgtttgtgaaccagggcccttgatatcg 144  Q
    |||||||||||||| |||||||  ||| ||||| ||| ||||||||| |||||||   |||||||||||||||||||||||| ||||| |||| | ||||    
T  30367253 tcccgtagttgccaaaattcttgcttgcgatgtggttaacgttcattggatcagcagtagcgataaagcttgtgtttgtgaatcagggtccttcaaatcg 30367154  T
Q  145 aaaagttcctcgatgacgcttcaaaac 171  Q
    ||| ||||||| |||||  ||||||||    
T  30367153 aaacgttcctccatgacatttcaaaac 30367127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 105 - 251
Target Start/End: Original strand, 13205560 - 13205706
Alignment:
Q  105 cgataaagcttgtgtttgtgaaccagggcccttgatatcgaaaagttcctcgatgacgcttcaaaacaatggttgcataatcatggaaatcggagagatg 204  Q
    |||||||||||||||||||||||||||  |||| | ||||||| ||||||| || ||| |||||||  | ||||  |||||||||||| | | | |  ||    
T  13205560 cgataaagcttgtgtttgtgaaccaggctccttcaaatcgaaatgttcctccattacgtttcaaaattaaggttagataatcatggaatttgaataagtg 13205659  T
Q  205 acgcaaaaatgttggtagcataccaattattggccaattaattggta 251  Q
    ||||||||  |  ||||||||||||||||||||| ||||||||||||    
T  13205660 acgcaaaagcgacggtagcataccaattattggcaaattaattggta 13205706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 107 - 263
Target Start/End: Complemental strand, 13069277 - 13069121
Alignment:
Q  107 ataaagcttgtgtttgtgaaccagggcccttgatatcgaaaagttcctcgatgacgcttcaaaacaatggttgcataatcatggaaatcggagagatgac 206  Q
    |||||||||||||||||||||||||  |||  | ||| ||| ||||||| |||| | |||||||  | |||||||  ||||||||||| ||| || | ||    
T  13069277 ataaagcttgtgtttgtgaaccaggctcctccaaatctaaacgttcctccatgatgtttcaaaattaaggttgcacgatcatggaaattggacaggttac 13069178  T
Q  207 gcaaaaatgttggtagcataccaattattggccaattaattggtacaaattcatctc 263  Q
     || ||  |   |||||||||||| ||||||||||||||||||||||||||||||||    
T  13069177 acataagcgccagtagcataccaaatattggccaattaattggtacaaattcatctc 13069121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 119 - 243
Target Start/End: Complemental strand, 19278233 - 19278109
Alignment:
Q  119 tttgtgaaccagggcccttgatatcgaaaagttcctcgatgacgcttcaaaacaatggttgcataatcatggaaatcggagagatgacgcaaaaatgttg 218  Q
    ||||||||||| || |||| | |  ||||||| |||| |||| | |||||||| | ||||||||||||||| |  | ||| || | | |||||| || ||    
T  19278233 tttgtgaaccaaggtcctttaaactgaaaagtacctccatgatgtttcaaaactaaggttgcataatcatgaatcttggataggttatgcaaaactgatg 19278134  T
Q  219 gtagcataccaattattggccaatt 243  Q
    ||||||| |||||||||||||||||    
T  19278133 gtagcatgccaattattggccaatt 19278109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 45 - 147
Target Start/End: Original strand, 31376542 - 31376644
Alignment:
Q  45 tcccgtagttgccacaattcttctttgtgatgtagttcacgttcatttgatcagctagagcgataaagcttgtgtttgtgaaccagggcccttgatatcg 144  Q
    |||||||||||||| |||||||  ||| ||||| ||| ||||| ||| |||||||    ||||||||||||||||||||||||||||| |||| | ||||    
T  31376542 tcccgtagttgccaaaattcttgcttgcgatgtggttaacgttaattggatcagcagtggcgataaagcttgtgtttgtgaaccagggtccttcaaatcg 31376641  T
Q  145 aaa 147  Q
    |||    
T  31376642 aaa 31376644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 103 - 131
Target Start/End: Complemental strand, 31385368 - 31385340
Alignment:
Q  103 agcgataaagcttgtgtttgtgaaccagg 131  Q
    |||||||||||||||||||||||||||||    
T  31385368 agcgataaagcttgtgtttgtgaaccagg 31385340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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