View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2863_low_6 (Length: 212)

Name: NF2863_low_6
Description: NF2863
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2863_low_6
NF2863_low_6
[»] chr3 (12 HSPs)
chr3 (14-198)||(2565341-2565525)
chr3 (11-77)||(31435925-31435991)
chr3 (11-77)||(43132159-43132225)
chr3 (11-78)||(1099201-1099268)
chr3 (17-76)||(32071449-32071508)
chr3 (17-77)||(38140366-38140426)
chr3 (11-77)||(6231503-6231569)
chr3 (11-77)||(11239122-11239188)
chr3 (11-77)||(12228258-12228324)
chr3 (17-75)||(18460950-18461008)
chr3 (11-77)||(28124438-28124504)
chr3 (11-77)||(44952311-44952377)
[»] chr2 (21 HSPs)
chr2 (11-75)||(14832813-14832877)
chr2 (11-88)||(2050869-2050946)
chr2 (18-78)||(24499450-24499510)
chr2 (11-77)||(41750532-41750598)
chr2 (18-74)||(1623392-1623448)
chr2 (18-77)||(40950861-40950920)
chr2 (11-82)||(45409253-45409324)
chr2 (11-77)||(1988314-1988380)
chr2 (18-64)||(14253532-14253578)
chr2 (11-76)||(18713660-18713725)
chr2 (11-75)||(28311701-28311765)
chr2 (11-82)||(6171794-6171865)
chr2 (19-73)||(3902467-3902521)
chr2 (11-77)||(4559562-4559628)
chr2 (11-77)||(9733848-9733914)
chr2 (20-77)||(7007585-7007642)
chr2 (18-79)||(37192532-37192593)
chr2 (21-73)||(5002843-5002895)
chr2 (18-82)||(25455034-25455098)
chr2 (11-75)||(37233432-37233496)
chr2 (11-83)||(39995127-39995199)
[»] chr1 (22 HSPs)
chr1 (11-82)||(5518501-5518572)
chr1 (11-84)||(48916017-48916090)
chr1 (18-82)||(29091677-29091741)
chr1 (11-83)||(47037461-47037533)
chr1 (11-82)||(9831867-9831938)
chr1 (18-73)||(13653862-13653917)
chr1 (21-76)||(31806759-31806814)
chr1 (18-73)||(49627535-49627590)
chr1 (11-73)||(30241013-30241075)
chr1 (11-77)||(49822919-49822985)
chr1 (18-76)||(52186049-52186107)
chr1 (18-77)||(1007758-1007817)
chr1 (11-77)||(6978774-6978840)
chr1 (11-77)||(9115841-9115907)
chr1 (11-77)||(13931886-13931952)
chr1 (11-77)||(25789767-25789833)
chr1 (11-77)||(39930461-39930527)
chr1 (20-77)||(24116339-24116396)
chr1 (11-76)||(51445083-51445148)
chr1 (18-82)||(5806288-5806352)
chr1 (21-73)||(20504995-20505047)
chr1 (18-82)||(32202328-32202392)
[»] chr8 (14 HSPs)
chr8 (11-77)||(21137134-21137200)
chr8 (11-82)||(7317376-7317447)
chr8 (18-77)||(33444628-33444687)
chr8 (18-75)||(29421493-29421550)
chr8 (11-82)||(26062147-26062218)
chr8 (11-77)||(10896219-10896285)
chr8 (11-77)||(42755870-42755936)
chr8 (18-83)||(7931249-7931314)
chr8 (28-80)||(5020489-5020541)
chr8 (11-82)||(32660930-32661001)
chr8 (18-77)||(34672344-34672403)
chr8 (18-77)||(38132739-38132798)
chr8 (11-77)||(12710648-12710714)
chr8 (18-74)||(35394400-35394456)
[»] chr5 (9 HSPs)
chr5 (17-77)||(6930653-6930713)
chr5 (18-79)||(32535947-32536008)
chr5 (11-76)||(11855658-11855723)
chr5 (18-77)||(26637045-26637104)
chr5 (18-77)||(42012181-42012240)
chr5 (22-64)||(27481023-27481065)
chr5 (18-82)||(555703-555767)
chr5 (23-79)||(20962605-20962661)
chr5 (12-64)||(28429705-28429757)
[»] chr7 (17 HSPs)
chr7 (18-77)||(41684024-41684083)
chr7 (11-77)||(41632366-41632432)
chr7 (12-77)||(45723211-45723276)
chr7 (18-77)||(28904188-28904247)
chr7 (11-77)||(6656226-6656292)
chr7 (11-77)||(16825356-16825422)
chr7 (11-82)||(18824148-18824220)
chr7 (11-82)||(39554186-39554257)
chr7 (11-77)||(11329996-11330062)
chr7 (11-77)||(27213857-27213923)
chr7 (11-77)||(43949248-43949314)
chr7 (11-77)||(45045629-45045695)
chr7 (11-64)||(34930481-34930534)
chr7 (24-77)||(44820270-44820323)
chr7 (17-77)||(11000712-11000772)
chr7 (24-76)||(19156633-19156685)
chr7 (24-76)||(20756032-20756084)
[»] chr4 (15 HSPs)
chr4 (11-77)||(25932448-25932514)
chr4 (11-84)||(23686794-23686867)
chr4 (11-82)||(35999693-35999764)
chr4 (18-64)||(9327260-9327306)
chr4 (18-64)||(9374019-9374065)
chr4 (18-64)||(9382297-9382343)
chr4 (18-74)||(10400810-10400866)
chr4 (18-82)||(30415916-30415980)
chr4 (11-82)||(40435907-40435978)
chr4 (11-82)||(48879332-48879403)
chr4 (11-77)||(936133-936199)
chr4 (11-77)||(43723271-43723337)
chr4 (11-77)||(47670369-47670435)
chr4 (18-77)||(36860132-36860190)
chr4 (21-77)||(38414223-38414277)
[»] scaffold0006 (1 HSPs)
scaffold0006 (18-73)||(143623-143678)
[»] chr6 (3 HSPs)
chr6 (18-77)||(6705767-6705826)
chr6 (11-82)||(2657703-2657774)
chr6 (11-82)||(8029336-8029407)
[»] scaffold0702 (1 HSPs)
scaffold0702 (11-77)||(3567-3633)
[»] scaffold0662 (1 HSPs)
scaffold0662 (11-77)||(4471-4537)


Alignment Details
Target: chr3 (Bit Score: 141; Significance: 4e-74; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 141; E-Value: 4e-74
Query Start/End: Original strand, 14 - 198
Target Start/End: Complemental strand, 2565525 - 2565341
Alignment:
Q  14 aggtatatatatttctatcattttattcttaagaatcaacaaatataacttaatacaaacacactcttataattgctctaagatgtgcaatattccacgt 113  Q
    |||||||||||||||||| ||||||||| |||||||||||||||||||||||| || ||||||| |||||||||||| |||||||||||||  |||||||    
T  2565525 aggtatatatatttctattattttattcctaagaatcaacaaatataacttaaaacgaacacacccttataattgctttaagatgtgcaattctccacgt 2565426  T
Q  114 attagataactccaaataaataagtatttcaaaataattgccggtttcaactttttataactccatagtattctctgtttcaaat 198  Q
    ||  ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2565425 atcggataactccaaataaataagtatttcaaactaattgccggtttcaactttttataactccatagtattctctgtttcaaat 2565341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 11 - 77
Target Start/End: Complemental strand, 31435991 - 31435925
Alignment:
Q  11 cataggtatatatatttctatcattttattcttaagaatcaacaaatataacttaatacaaacacac 77  Q
    |||||| ||||| ||||||||||||||||||| | ||||||||||||||||||| | ||||||||||    
T  31435991 cataggcatatacatttctatcattttattctcaggaatcaacaaatataacttgaaacaaacacac 31435925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 11 - 77
Target Start/End: Complemental strand, 43132225 - 43132159
Alignment:
Q  11 cataggtatatatatttctatcattttattcttaagaatcaacaaatataacttaatacaaacacac 77  Q
    |||||| ||||||||| |||| ||||||||||  |||||||||||||||||||| | ||||||||||    
T  43132225 cataggcatatatattcctattattttattctcgagaatcaacaaatataacttgaaacaaacacac 43132159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 11 - 78
Target Start/End: Original strand, 1099201 - 1099268
Alignment:
Q  11 cataggtatatatatttctatcattttattcttaagaatcaacaaatataacttaatacaaacacact 78  Q
    |||||| ||||| ||||||||||||||||||    |||||||||| |||||||||| |||||||||||    
T  1099201 catagggatatacatttctatcattttattcccgggaatcaacaattataacttaaaacaaacacact 1099268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 17 - 76
Target Start/End: Original strand, 32071449 - 32071508
Alignment:
Q  17 tatatatatttctatcattttattcttaagaatcaacaaatataacttaatacaaacaca 76  Q
    |||||||||||||||||||||||| |||  |||||| ||||||||||| | |||||||||    
T  32071449 tatatatatttctatcattttatttttagaaatcaataaatataacttcaaacaaacaca 32071508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 17 - 77
Target Start/End: Complemental strand, 38140426 - 38140366
Alignment:
Q  17 tatatatatttctatcattttattcttaagaatcaacaaatataacttaatacaaacacac 77  Q
    ||||||||| | |||||||||||||| | ||||| ||||||||||||||| | ||||||||    
T  38140426 tatatatatatatatcattttattctcatgaatctacaaatataacttaaaataaacacac 38140366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 11 - 77
Target Start/End: Complemental strand, 6231569 - 6231503
Alignment:
Q  11 cataggtatatatatttctatcattttattcttaagaatcaacaaatataacttaatacaaacacac 77  Q
    |||||| ||||| ||| |||||||||||||||   |||||||||| |||||||| | ||||||||||    
T  6231569 cataggcatatacattcctatcattttattctcgggaatcaacaattataacttgaaacaaacacac 6231503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 11 - 77
Target Start/End: Complemental strand, 11239188 - 11239122
Alignment:
Q  11 cataggtatatatatttctatcattttattcttaagaatcaacaaatataacttaatacaaacacac 77  Q
    |||||| ||||| ||||||||||||||||||    |||||||||| |||||||| | ||||||||||    
T  11239188 cataggcatatacatttctatcattttattcccgggaatcaacaattataacttgaaacaaacacac 11239122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 11 - 77
Target Start/End: Complemental strand, 12228324 - 12228258
Alignment:
Q  11 cataggtatatatatttctatcattttattcttaagaatcaacaaatataacttaatacaaacacac 77  Q
    |||||| ||||||||||||||||||||||||  | |||| ||||| ||||  |||| ||||||||||    
T  12228324 cataggcatatatatttctatcattttattcgcaggaattaacaactatattttaaaacaaacacac 12228258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 75
Target Start/End: Original strand, 18460950 - 18461008
Alignment:
Q  17 tatatatatttctatcattttattcttaagaatcaacaaatataacttaatacaaacac 75  Q
    ||||||||||||||| |||| ||| ||| ||| ||||||||||||||| | ||||||||    
T  18460950 tatatatatttctattatttcattattaggaaacaacaaatataacttgaaacaaacac 18461008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 11 - 77
Target Start/End: Complemental strand, 28124504 - 28124438
Alignment:
Q  11 cataggtatatatatttctatcattttattcttaagaatcaacaaatataacttaatacaaacacac 77  Q
    |||||| ||||| ||| ||||||||||||||   ||||||||||| |||||||| | ||||||||||    
T  28124504 cataggcatatacattcctatcattttattcccgagaatcaacaattataacttgaaacaaacacac 28124438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 11 - 77
Target Start/End: Original strand, 44952311 - 44952377
Alignment:
Q  11 cataggtatatatatttctatcattttattcttaagaatcaacaaatataacttaatacaaacacac 77  Q
    |||||| ||||| ||||||||||||||||||    |||||||||| |||||||| | ||||||||||    
T  44952311 cataggcatatacatttctatcattttattcccgggaatcaacaattataacttgaaacaaacacac 44952377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 45; Significance: 8e-17; HSPs: 21)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 11 - 75
Target Start/End: Original strand, 14832813 - 14832877
Alignment:
Q  11 cataggtatatatatttctatcattttattcttaagaatcaacaaatataacttaatacaaacac 75  Q
    |||||| |||||||||||||||||||||||| || ||||||||||||||||||| | ||||||||    
T  14832813 cataggcatatatatttctatcattttattcctaggaatcaacaaatataacttgaaacaaacac 14832877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 11 - 88
Target Start/End: Original strand, 2050869 - 2050946
Alignment:
Q  11 cataggtatatatatttctatcattttattcttaagaatcaacaaatataacttaatacaaacacactcttataattg 88  Q
    |||||||||||| ||| |||||||||||||||   |||||||||| |||||||| | |||||||||| ||||||||||    
T  2050869 cataggtatatacattcctatcattttattctcgggaatcaacaattataacttgaaacaaacacacacttataattg 2050946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 18 - 78
Target Start/End: Original strand, 24499450 - 24499510
Alignment:
Q  18 atatatatttctatcattttattcttaagaatcaacaaatataacttaatacaaacacact 78  Q
    |||||||||||||||||||||||  || ||||||||||||||||||| | |||||||||||    
T  24499450 atatatatttctatcattttatttctatgaatcaacaaatataacttgaaacaaacacact 24499510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 11 - 77
Target Start/End: Original strand, 41750532 - 41750598
Alignment:
Q  11 cataggtatatatatttctatcattttattcttaagaatcaacaaatataacttaatacaaacacac 77  Q
    |||||| ||||| |||||||||||||||||| || |||||||||| |||||||| | ||||||||||    
T  41750532 cataggcatatacatttctatcattttattcctaggaatcaacaattataacttgaaacaaacacac 41750598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 18 - 74
Target Start/End: Original strand, 1623392 - 1623448
Alignment:
Q  18 atatatatttctatcattttattcttaagaatcaacaaatataacttaatacaaaca 74  Q
    |||||||||||||| |||||| ||||| |||||||||||||||| |||| |||||||    
T  1623392 atatatatttctattattttactcttaggaatcaacaaatataatttaaaacaaaca 1623448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 18 - 77
Target Start/End: Complemental strand, 40950920 - 40950861
Alignment:
Q  18 atatatatttctatcattttattcttaagaatcaacaaatataacttaatacaaacacac 77  Q
    ||||||||||||||||||||||||   ||||||||||| |||||||| | ||||||||||    
T  40950920 atatatatttctatcattttattcccgagaatcaacaattataacttgaaacaaacacac 40950861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 11 - 82
Target Start/End: Original strand, 45409253 - 45409324
Alignment:
Q  11 cataggtatatatatttctatcattttattcttaagaatcaacaaatataacttaatacaaacacactctta 82  Q
    |||||| ||||| ||| |||||||||||| |||  ||||||||||||||||||| | |||||||||| ||||    
T  45409253 cataggcatatacattcctatcattttatacttgggaatcaacaaatataacttgaaacaaacacaccctta 45409324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 11 - 77
Target Start/End: Original strand, 1988314 - 1988380
Alignment:
Q  11 cataggtatatatatttctatcattttattcttaagaatcaacaaatataacttaatacaaacacac 77  Q
    |||||| || |||||||||||||||||||||  |  |||||||||||||||||| | ||||||||||    
T  1988314 cataggcatgtatatttctatcattttattcccagaaatcaacaaatataacttcaaacaaacacac 1988380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 18 - 64
Target Start/End: Original strand, 14253532 - 14253578
Alignment:
Q  18 atatatatttctatcattttattcttaagaatcaacaaatataactt 64  Q
    ||||||||||||||||||||||||   ||||||||||||||||||||    
T  14253532 atatatatttctatcattttattcccgagaatcaacaaatataactt 14253578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 11 - 76
Target Start/End: Complemental strand, 18713725 - 18713660
Alignment:
Q  11 cataggtatatatatttctatcattttattcttaagaatcaacaaatataacttaatacaaacaca 76  Q
    |||||| |||||||||| ||||||||||||   | ||||||||||||||||||| | |||||||||    
T  18713725 cataggcatatatatttatatcattttattaccatgaatcaacaaatataacttgaaacaaacaca 18713660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 11 - 75
Target Start/End: Complemental strand, 28311765 - 28311701
Alignment:
Q  11 cataggtatatatatttctatcattttattcttaagaatcaacaaatataacttaatacaaacac 75  Q
    |||||| ||||||||| ||||||||||||||    ||||||||||||||||||| | ||||||||    
T  28311765 cataggcatatatattcctatcattttattcccgggaatcaacaaatataacttgaaacaaacac 28311701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 11 - 82
Target Start/End: Original strand, 6171794 - 6171865
Alignment:
Q  11 cataggtatatatatttctatcattttattcttaagaatcaacaaatataacttaatacaaacacactctta 82  Q
    |||||| ||||| ||| |||||||||||||||   |||||||||| |||||||| | |||||||||| ||||    
T  6171794 cataggcatatacattcctatcattttattctcgggaatcaacaattataacttgaaacaaacacaccctta 6171865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 73
Target Start/End: Original strand, 3902467 - 3902521
Alignment:
Q  19 tatatatttctatcattttattcttaagaatcaacaaatataacttaatacaaac 73  Q
    |||||||||||||||||||||||| | |||  |||||||||||||| | ||||||    
T  3902467 tatatatttctatcattttattctcaggaaagaacaaatataacttgaaacaaac 3902521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 11 - 77
Target Start/End: Original strand, 4559562 - 4559628
Alignment:
Q  11 cataggtatatatatttctatcattttattcttaagaatcaacaaatataacttaatacaaacacac 77  Q
    |||||| ||||| ||| | ||||||||||||||  |||||||||| |||||||| | ||||||||||    
T  4559562 cataggcatatacattccaatcattttattcttgggaatcaacaattataacttgaaacaaacacac 4559628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 11 - 77
Target Start/End: Complemental strand, 9733914 - 9733848
Alignment:
Q  11 cataggtatatatatttctatcattttattcttaagaatcaacaaatataacttaatacaaacacac 77  Q
    |||||| ||||| ||||||||||||||||||    |||||||||| |||||||| | ||||||||||    
T  9733914 cataggcatatacatttctatcattttattcccgggaatcaacaattataacttgaaacaaacacac 9733848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 20 - 77
Target Start/End: Original strand, 7007585 - 7007642
Alignment:
Q  20 atatatttctatcattttattcttaagaatcaacaaatataacttaatacaaacacac 77  Q
    ||||||||| |||||||||| |  ||||||||||||||||||||| | | ||||||||    
T  7007585 atatatttccatcattttatccccaagaatcaacaaatataacttgaaataaacacac 7007642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 18 - 79
Target Start/End: Original strand, 37192532 - 37192593
Alignment:
Q  18 atatatatttctatcattttattcttaagaatcaacaaatataacttaatacaaacacactc 79  Q
    ||||| ||||||||||||||||||    |||||||||| |||||||| | ||||||||||||    
T  37192532 atatacatttctatcattttattcccgggaatcaacaattataacttgaaacaaacacactc 37192593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 73
Target Start/End: Complemental strand, 5002895 - 5002843
Alignment:
Q  21 tatatttctatcattttattcttaagaatcaacaaatataacttaatacaaac 73  Q
    |||| |||||||||||||||||||  |||| ||||||||||||| | ||||||    
T  5002895 tatacttctatcattttattcttagaaatctacaaatataacttgaaacaaac 5002843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 82
Target Start/End: Original strand, 25455034 - 25455098
Alignment:
Q  18 atatatatttctatcattttattcttaagaatcaacaaatataacttaatacaaacacactctta 82  Q
    |||| ||||| ||| |||||||||| | ||||| ||||||||||||| | |||||||||| ||||    
T  25455034 atatgtatttttatgattttattctcaggaatctacaaatataacttgaaacaaacacaccctta 25455098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 11 - 75
Target Start/End: Original strand, 37233432 - 37233496
Alignment:
Q  11 cataggtatatatatttctatcattttattcttaagaatcaacaaatataacttaatacaaacac 75  Q
    |||||| |||||| || ||||||||||||||    ||||||||||||||||||| | ||||||||    
T  37233432 cataggcatatatgttcctatcattttattcccgggaatcaacaaatataacttgaaacaaacac 37233496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 11 - 83
Target Start/End: Complemental strand, 39995199 - 39995127
Alignment:
Q  11 cataggtatatatatttctatcattttattcttaagaatcaacaaatataacttaatacaaacacactcttat 83  Q
    |||||| ||||| ||| ||||||||||||||    |||||||||| |||||||| | |||||||||| |||||    
T  39995199 cataggcatatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacacacccttat 39995127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 44; Significance: 3e-16; HSPs: 22)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 11 - 82
Target Start/End: Complemental strand, 5518572 - 5518501
Alignment:
Q  11 cataggtatatatatttctatcattttattcttaagaatcaacaaatataacttaatacaaacacactctta 82  Q
    |||||| |||||||||||||||||||||||| |  ||||||||||||||||||| | |||||||||| ||||    
T  5518572 cataggcatatatatttctatcattttattcctgggaatcaacaaatataacttgaaacaaacacaccctta 5518501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 11 - 84
Target Start/End: Complemental strand, 48916090 - 48916017
Alignment:
Q  11 cataggtatatatatttctatcattttattcttaagaatcaacaaatataacttaatacaaacacactcttata 84  Q
    |||||| ||||| |||||||||||||||||||   ||||||||||||||||||| | | |||||||| ||||||    
T  48916090 cataggcatatacatttctatcattttattctctggaatcaacaaatataacttgaaataaacacacccttata 48916017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 18 - 82
Target Start/End: Original strand, 29091677 - 29091741
Alignment:
Q  18 atatatatttctatcattttattcttaagaatcaacaaatataacttaatacaaacacactctta 82  Q
    |||||||||| |||||||||||| | | ||||||||||||||||||| | |||||||||| ||||    
T  29091677 atatatatttttatcattttattatcaggaatcaacaaatataacttgaaacaaacacaccctta 29091741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 11 - 83
Target Start/End: Original strand, 47037461 - 47037533
Alignment:
Q  11 cataggtatatatatttctatcattttattcttaagaatcaacaaatataacttaatacaaacacactcttat 83  Q
    |||||| ||||||||||||||||||||||||    |||||||||| |||||||| | |||||||||| |||||    
T  47037461 cataggcatatatatttctatcattttattcccgggaatcaacaattataacttgaaacaaacacacccttat 47037533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 11 - 82
Target Start/End: Complemental strand, 9831938 - 9831867
Alignment:
Q  11 cataggtatatatatttctatcattttattcttaagaatcaacaaatataacttaatacaaacacactctta 82  Q
    |||||| ||||| |||||||||||||||||| |  |||||||||| |||||||| | |||||||||| ||||    
T  9831938 cataggcatatacatttctatcattttattcctgggaatcaacaattataacttgaaacaaacacacactta 9831867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 18 - 73
Target Start/End: Original strand, 13653862 - 13653917
Alignment:
Q  18 atatatatttctatcattttattcttaagaatcaacaaatataacttaatacaaac 73  Q
    ||||||||||||||||||||||||| | |||||||||||| |||||| | ||||||    
T  13653862 atatatatttctatcattttattctcaggaatcaacaaatttaacttgaaacaaac 13653917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 21 - 76
Target Start/End: Complemental strand, 31806814 - 31806759
Alignment:
Q  21 tatatttctatcattttattcttaagaatcaacaaatataacttaatacaaacaca 76  Q
    |||||||||||||||||||||| | ||||| ||||||||||||| | |||||||||    
T  31806814 tatatttctatcattttattctcaggaatctacaaatataacttgaaacaaacaca 31806759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 18 - 73
Target Start/End: Original strand, 49627535 - 49627590
Alignment:
Q  18 atatatatttctatcattttattcttaagaatcaacaaatataacttaatacaaac 73  Q
    ||||||||||||||||||||||||| | ||||| ||||| ||||||||| ||||||    
T  49627535 atatatatttctatcattttattctcatgaatctacaaacataacttaaaacaaac 49627590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 11 - 73
Target Start/End: Original strand, 30241013 - 30241075
Alignment:
Q  11 cataggtatatatatttctatcattttattcttaagaatcaacaaatataacttaatacaaac 73  Q
    |||||| |||||||||||||||||||||||   || |||||||||||||||||| | ||||||    
T  30241013 cataggcatatatatttctatcattttattaccaaaaatcaacaaatataacttgaaacaaac 30241075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 11 - 77
Target Start/End: Complemental strand, 49822985 - 49822919
Alignment:
Q  11 cataggtatatatatttctatcattttattcttaagaatcaacaaatataacttaatacaaacacac 77  Q
    |||||| ||||| ||||||||||||||||||   ||||||||||| |||||||| | ||||||||||    
T  49822985 cataggcatatacatttctatcattttattcccgagaatcaacaattataacttgaaacaaacacac 49822919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 18 - 76
Target Start/End: Complemental strand, 52186107 - 52186049
Alignment:
Q  18 atatatatttctatcattttattcttaagaatcaacaaatataacttaatacaaacaca 76  Q
    ||||||||||||||||||||||| | |  |||||||||||||||||| | |||||||||    
T  52186107 atatatatttctatcattttattataagaaatcaacaaatataacttgaaacaaacaca 52186049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 18 - 77
Target Start/End: Original strand, 1007758 - 1007817
Alignment:
Q  18 atatatatttctatcattttattcttaagaatcaacaaatataacttaatacaaacacac 77  Q
    |||||||||  ||||||||||||||   ||||||||||||||||||| | ||||||||||    
T  1007758 atatatattcatatcattttattctcgggaatcaacaaatataacttgaaacaaacacac 1007817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 11 - 77
Target Start/End: Original strand, 6978774 - 6978840
Alignment:
Q  11 cataggtatatatatttctatcattttattcttaagaatcaacaaatataacttaatacaaacacac 77  Q
    |||||| ||||| ||||||||||||||||||    |||||||||| |||||||| | ||||||||||    
T  6978774 cataggcatatacatttctatcattttattcccgggaatcaacaattataacttgaaacaaacacac 6978840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 11 - 77
Target Start/End: Original strand, 9115841 - 9115907
Alignment:
Q  11 cataggtatatatatttctatcattttattcttaagaatcaacaaatataacttaatacaaacacac 77  Q
    |||||| ||||| ||||||||||||||||||    |||||||||| |||||||| | ||||||||||    
T  9115841 cataggcatatacatttctatcattttattcccgggaatcaacaattataacttgaaacaaacacac 9115907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 11 - 77
Target Start/End: Complemental strand, 13931952 - 13931886
Alignment:
Q  11 cataggtatatatatttctatcattttattcttaagaatcaacaaatataacttaatacaaacacac 77  Q
    |||||| |||| ||||| ||| ||||||||| || ||||| ||||||||||||| | ||||||||||    
T  13931952 cataggcatatgtatttttatgattttattcctaggaatctacaaatataacttcaaacaaacacac 13931886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 11 - 77
Target Start/End: Original strand, 25789767 - 25789833
Alignment:
Q  11 cataggtatatatatttctatcattttattcttaagaatcaacaaatataacttaatacaaacacac 77  Q
    |||||| ||||| ||||||||||||||||||    |||||||||| |||||||| | ||||||||||    
T  25789767 cataggcatatacatttctatcattttattcccgggaatcaacaattataacttgaaacaaacacac 25789833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 11 - 77
Target Start/End: Original strand, 39930461 - 39930527
Alignment:
Q  11 cataggtatatatatttctatcattttattcttaagaatcaacaaatataacttaatacaaacacac 77  Q
    |||||| ||||| ||||||||||||||||||    |||||||||| |||||||| | ||||||||||    
T  39930461 cataggcatatacatttctatcattttattcccgggaatcaacaattataacttgaaacaaacacac 39930527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 20 - 77
Target Start/End: Complemental strand, 24116396 - 24116339
Alignment:
Q  20 atatatttctatcattttattcttaagaatcaacaaatataacttaatacaaacacac 77  Q
    ||||||||||||| ||||||||| | ||||| ||||||||||| | | ||||||||||    
T  24116396 atatatttctatcgttttattctcaggaatctacaaatataacctgaaacaaacacac 24116339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 11 - 76
Target Start/End: Complemental strand, 51445148 - 51445083
Alignment:
Q  11 cataggtatatatatttctatcattttattcttaagaatcaacaaatataacttaatacaaacaca 76  Q
    |||||||||||| |||| |||||||||||||    |||||||||| |||||||| | |||||||||    
T  51445148 cataggtatatacatttatatcattttattcccgggaatcaacaattataacttgaaacaaacaca 51445083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 82
Target Start/End: Complemental strand, 5806352 - 5806288
Alignment:
Q  18 atatatatttctatcattttattcttaagaatcaacaaatataacttaatacaaacacactctta 82  Q
    ||||| ||||||||||||||||||    |||||||||| |||||||| | |||||||||| ||||    
T  5806352 atatacatttctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccctta 5806288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 73
Target Start/End: Complemental strand, 20505047 - 20504995
Alignment:
Q  21 tatatttctatcattttattcttaagaatcaacaaatataacttaatacaaac 73  Q
    |||||||||||||||||||||| |  |||| |||||||||| |||| ||||||    
T  20505047 tatatttctatcattttattctcagaaatctacaaatataatttaaaacaaac 20504995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 82
Target Start/End: Complemental strand, 32202392 - 32202328
Alignment:
Q  18 atatatatttctatcattttattcttaagaatcaacaaatataacttaatacaaacacactctta 82  Q
    ||||| ||||||||||||||||| |   |||||||||| |||||||| | |||||||||| ||||    
T  32202392 atatacatttctatcattttattttcgggaatcaacaattataacttgaaacaaacacaccctta 32202328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 11 - 77
Target Start/End: Complemental strand, 21137200 - 21137134
Alignment:
Q  11 cataggtatatatatttctatcattttattcttaagaatcaacaaatataacttaatacaaacacac 77  Q
    |||||| |||||||||||||| |||||||||| | ||||||||||||||||||| | ||||||||||    
T  21137200 cataggcatatatatttctattattttattctcaggaatcaacaaatataacttcaaacaaacacac 21137134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 11 - 82
Target Start/End: Original strand, 7317376 - 7317447
Alignment:
Q  11 cataggtatatatatttctatcattttattcttaagaatcaacaaatataacttaatacaaacacactctta 82  Q
    |||||| ||||||||| ||||||||||||| || | |||||||||||||||||| | |||||||||| ||||    
T  7317376 cataggcatatatattcctatcattttatttttgaaaatcaacaaatataacttgaaacaaacacaccctta 7317447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 18 - 77
Target Start/End: Complemental strand, 33444687 - 33444628
Alignment:
Q  18 atatatatttctatcattttattcttaagaatcaacaaatataacttaatacaaacacac 77  Q
    |||||||||| |||||||||||||| | ||||||||||||||||||| | ||||||||||    
T  33444687 atatatatttttatcattttattctcaggaatcaacaaatataacttgaaacaaacacac 33444628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 18 - 75
Target Start/End: Complemental strand, 29421550 - 29421493
Alignment:
Q  18 atatatatttctatcattttattcttaagaatcaacaaatataacttaatacaaacac 75  Q
    ||||||||||||||||||||||||| | |||||||||||||||| || | ||||||||    
T  29421550 atatatatttctatcattttattctcatgaatcaacaaatataatttgaaacaaacac 29421493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 11 - 82
Target Start/End: Original strand, 26062147 - 26062218
Alignment:
Q  11 cataggtatatatatttctatcattttattcttaagaatcaacaaatataacttaatacaaacacactctta 82  Q
    |||||| ||||| ||||||||||||||||||   ||||||||||| |||||||| | |||||||||| ||||    
T  26062147 cataggaatatacatttctatcattttattcccgagaatcaacaattataacttgaaacaaacacaccctta 26062218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 11 - 77
Target Start/End: Complemental strand, 10896285 - 10896219
Alignment:
Q  11 cataggtatatatatttctatcattttattcttaagaatcaacaaatataacttaatacaaacacac 77  Q
    |||||| ||||| |||||||||||||||||| |  |||||||||| |||||||| | ||||||||||    
T  10896285 cataggcatatacatttctatcattttattcctgggaatcaacaattataacttgaaacaaacacac 10896219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 11 - 77
Target Start/End: Original strand, 42755870 - 42755936
Alignment:
Q  11 cataggtatatatatttctatcattttattcttaagaatcaacaaatataacttaatacaaacacac 77  Q
    |||||| ||||| ||||||||||||||||||  | |||||||||| |||||||| | ||||||||||    
T  42755870 cataggcatatacatttctatcattttattcccaggaatcaacaattataacttgaaacaaacacac 42755936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 18 - 83
Target Start/End: Original strand, 7931249 - 7931314
Alignment:
Q  18 atatatatttctatcattttattcttaagaatcaacaaatataacttaatacaaacacactcttat 83  Q
    ||||| ||||||||||||||||||  | |||||||||| |||||||| | |||||||| |||||||    
T  7931249 atatacatttctatcattttattcccaggaatcaacaattataacttgaaacaaacactctcttat 7931314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 28 - 80
Target Start/End: Complemental strand, 5020541 - 5020489
Alignment:
Q  28 ctatcattttattcttaagaatcaacaaatataacttaatacaaacacactct 80  Q
    ||||||||||||||  | ||||||||||||||||||| | |||||||||||||    
T  5020541 ctatcattttattcccatgaatcaacaaatataacttgaaacaaacacactct 5020489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 11 - 82
Target Start/End: Complemental strand, 32661001 - 32660930
Alignment:
Q  11 cataggtatatatatttctatcattttattcttaagaatcaacaaatataacttaatacaaacacactctta 82  Q
    |||||| ||||| ||| ||||||||||||||  | |||||||||| |||||||| | |||||||||| ||||    
T  32661001 cataggcatatacattcctatcattttattcccaggaatcaacaattataacttgaaacaaacacaccctta 32660930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 18 - 77
Target Start/End: Original strand, 34672344 - 34672403
Alignment:
Q  18 atatatatttctatcattttattcttaagaatcaacaaatataacttaatacaaacacac 77  Q
    |||||||||| |||||||||||| | | ||||||||||||| ||||| | ||||||||||    
T  34672344 atatatatttttatcattttattttcaggaatcaacaaatacaacttcaaacaaacacac 34672403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 18 - 77
Target Start/End: Complemental strand, 38132798 - 38132739
Alignment:
Q  18 atatatatttctatcattttattcttaagaatcaacaaatataacttaatacaaacacac 77  Q
    ||||| ||||||||||||||||||   ||||||||||| |||||||| | ||||||||||    
T  38132798 atatacatttctatcattttattcccgagaatcaacaattataacttgaaacaaacacac 38132739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 11 - 77
Target Start/End: Original strand, 12710648 - 12710714
Alignment:
Q  11 cataggtatatatatttctatcattttattcttaagaatcaacaaatataacttaatacaaacacac 77  Q
    |||||| ||||| ||||||||||||||||||    |||||||||| |||||||| | ||||||||||    
T  12710648 cataggcatatacatttctatcattttattcccgggaatcaacaattataacttgaaacaaacacac 12710714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 74
Target Start/End: Original strand, 35394400 - 35394456
Alignment:
Q  18 atatatatttctatcattttattcttaagaatcaacaaatataacttaatacaaaca 74  Q
    |||||||||||| ||||||||||||   ||||||| ||||||||||| | |||||||    
T  35394400 atatatatttctttcattttattctcgtgaatcaataaatataacttgaaacaaaca 35394456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 17 - 77
Target Start/End: Original strand, 6930653 - 6930713
Alignment:
Q  17 tatatatatttctatcattttattcttaagaatcaacaaatataacttaatacaaacacac 77  Q
    |||||||||||||||||||||||||| | ||||||||||||||||||| | | ||||||||    
T  6930653 tatatatatttctatcattttattctcaggaatcaacaaatataacttgaaataaacacac 6930713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 18 - 79
Target Start/End: Original strand, 32535947 - 32536008
Alignment:
Q  18 atatatatttctatcattttattcttaagaatcaacaaatataacttaatacaaacacactc 79  Q
    ||||| |||||||||||||||||| |  |||||||||| |||||||||| ||||||||||||    
T  32535947 atatacatttctatcattttattcctgggaatcaacaattataacttaaaacaaacacactc 32536008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 11 - 76
Target Start/End: Complemental strand, 11855723 - 11855658
Alignment:
Q  11 cataggtatatatatttctatcattttattcttaagaatcaacaaatataacttaatacaaacaca 76  Q
    |||||| ||||| ||| ||||||||||||||| | |||||||||| |||||||| | |||||||||    
T  11855723 cataggcatatacattcctatcattttattctcaggaatcaacaattataacttgaaacaaacaca 11855658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 18 - 77
Target Start/End: Complemental strand, 26637104 - 26637045
Alignment:
Q  18 atatatatttctatcattttattcttaagaatcaacaaatataacttaatacaaacacac 77  Q
    ||||||| ||||||||||||||||  |  |||||||||||||||||| | ||||||||||    
T  26637104 atatataattctatcattttattcccattaatcaacaaatataacttgaaacaaacacac 26637045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 18 - 77
Target Start/End: Complemental strand, 42012240 - 42012181
Alignment:
Q  18 atatatatttctatcattttattcttaagaatcaacaaatataacttaatacaaacacac 77  Q
    |||| |||||||||||||||||||   |||||||||||||||| ||| | ||||||||||    
T  42012240 atatgtatttctatcattttattcccgagaatcaacaaatatagcttcaaacaaacacac 42012181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 22 - 64
Target Start/End: Original strand, 27481023 - 27481065
Alignment:
Q  22 atatttctatcattttattcttaagaatcaacaaatataactt 64  Q
    ||||| ||||||||||||||| || ||||||||||||||||||    
T  27481023 atattcctatcattttattctcaaaaatcaacaaatataactt 27481065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 82
Target Start/End: Complemental strand, 555767 - 555703
Alignment:
Q  18 atatatatttctatcattttattcttaagaatcaacaaatataacttaatacaaacacactctta 82  Q
    ||||| ||||||||||||||||||    |||||||||| |||||||| | |||||||||| ||||    
T  555767 atatacatttctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccctta 555703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 23 - 79
Target Start/End: Original strand, 20962605 - 20962661
Alignment:
Q  23 tatttctatcattttattcttaagaatcaacaaatataacttaatacaaacacactc 79  Q
    |||| ||||||||||||||  ||||||| || |||||||||| | ||||||||||||    
T  20962605 tattcctatcattttattcccaagaatctacgaatataacttgaaacaaacacactc 20962661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 12 - 64
Target Start/End: Original strand, 28429705 - 28429757
Alignment:
Q  12 ataggtatatatatttctatcattttattcttaagaatcaacaaatataactt 64  Q
    ||||| || ||||||||||||||||||||  |||||||| || ||||||||||    
T  28429705 ataggcatgtatatttctatcattttatttctaagaatctacgaatataactt 28429757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 18 - 77
Target Start/End: Complemental strand, 41684083 - 41684024
Alignment:
Q  18 atatatatttctatcattttattcttaagaatcaacaaatataacttaatacaaacacac 77  Q
    ||||||||||||||||| ||||||| | ||||||||||||||||||| | ||||||||||    
T  41684083 atatatatttctatcatattattctcaggaatcaacaaatataacttgaaacaaacacac 41684024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 11 - 77
Target Start/End: Complemental strand, 41632432 - 41632366
Alignment:
Q  11 cataggtatatatatttctatcattttattcttaagaatcaacaaatataacttaatacaaacacac 77  Q
    |||||| ||||| ||||||||||||||||||| | |||||||||| |||||||| | ||||||||||    
T  41632432 cataggcatatacatttctatcattttattctcaggaatcaacaattataacttgaaacaaacacac 41632366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 12 - 77
Target Start/End: Original strand, 45723211 - 45723276
Alignment:
Q  12 ataggtatatatatttctatcattttattcttaagaatcaacaaatataacttaatacaaacacac 77  Q
    ||||| ||||||||| |||||||||||||||   ||||||||||||||||||| | ||||||||||    
T  45723211 ataggcatatatattcctatcattttattctcgggaatcaacaaatataacttgaaacaaacacac 45723276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 18 - 77
Target Start/End: Complemental strand, 28904247 - 28904188
Alignment:
Q  18 atatatatttctatcattttattcttaagaatcaacaaatataacttaatacaaacacac 77  Q
    ||||| |||||||||||||||||||   |||||||||| |||||||||| ||||||||||    
T  28904247 atatacatttctatcattttattctcgggaatcaacaattataacttaaaacaaacacac 28904188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 11 - 77
Target Start/End: Complemental strand, 6656292 - 6656226
Alignment:
Q  11 cataggtatatatatttctatcattttattcttaagaatcaacaaatataacttaatacaaacacac 77  Q
    ||||||||||||||||  ||||||||||||   || |||||||||||||||||| | ||||||||||    
T  6656292 cataggtatatatattcatatcattttatttccaaaaatcaacaaatataacttgaaacaaacacac 6656226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 11 - 77
Target Start/End: Complemental strand, 16825422 - 16825356
Alignment:
Q  11 cataggtatatatatttctatcattttattcttaagaatcaacaaatataacttaatacaaacacac 77  Q
    |||||| ||||| |||||||||||||||||| || |||| ||||| |||||||| | ||||||||||    
T  16825422 cataggcatatacatttctatcattttattcctaggaattaacaattataacttgaaacaaacacac 16825356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 11 - 82
Target Start/End: Original strand, 18824148 - 18824220
Alignment:
Q  11 cataggtatatatattt-ctatcattttattcttaagaatcaacaaatataacttaatacaaacacactctta 82  Q
    |||||| |||||||||| ||||||||||||||  || |||||||||||| ||||| | |||||||||| ||||    
T  18824148 cataggcatatatattttctatcattttattcccaaaaatcaacaaatacaacttgaaacaaacacaccctta 18824220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 11 - 82
Target Start/End: Original strand, 39554186 - 39554257
Alignment:
Q  11 cataggtatatatatttctatcattttattcttaagaatcaacaaatataacttaatacaaacacactctta 82  Q
    |||||| ||||| ||||||||||||||||||    |||||||||| |||||||| | |||||||||| ||||    
T  39554186 cataggcatatacatttctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccctta 39554257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 11 - 77
Target Start/End: Original strand, 11329996 - 11330062
Alignment:
Q  11 cataggtatatatatttctatcattttattcttaagaatcaacaaatataacttaatacaaacacac 77  Q
    |||||| ||||| ||||||||||||||||||    |||||||||| |||||||| | ||||||||||    
T  11329996 cataggcatatacatttctatcattttattcccgggaatcaacaattataacttgaaacaaacacac 11330062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 11 - 77
Target Start/End: Complemental strand, 27213923 - 27213857
Alignment:
Q  11 cataggtatatatatttctatcattttattcttaagaatcaacaaatataacttaatacaaacacac 77  Q
    |||||| ||||| ||||||||||||||||||    |||||||||| |||||||| | ||||||||||    
T  27213923 cataggcatatacatttctatcattttattcccgggaatcaacaattataacttgaaacaaacacac 27213857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 11 - 77
Target Start/End: Original strand, 43949248 - 43949314
Alignment:
Q  11 cataggtatatatatttctatcattttattcttaagaatcaacaaatataacttaatacaaacacac 77  Q
    |||||| ||||| ||||||||||||||||||    |||||||||| |||||||| | ||||||||||    
T  43949248 cataggcatatacatttctatcattttattcccgggaatcaacaattataacttgaaacaaacacac 43949314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 11 - 77
Target Start/End: Original strand, 45045629 - 45045695
Alignment:
Q  11 cataggtatatatatttctatcattttattcttaagaatcaacaaatataacttaatacaaacacac 77  Q
    |||||| ||||| ||| ||||||||||||||    |||||||||| |||||||||| ||||||||||    
T  45045629 cataggcatatacattcctatcattttattcccgggaatcaacaattataacttaaaacaaacacac 45045695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 11 - 64
Target Start/End: Complemental strand, 34930534 - 34930481
Alignment:
Q  11 cataggtatatatatttctatcattttattcttaagaatcaacaaatataactt 64  Q
    |||||| ||||| ||||||||||||||||||  | |||||||||| ||||||||    
T  34930534 cataggcatatacatttctatcattttattcccaggaatcaacaattataactt 34930481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 24 - 77
Target Start/End: Original strand, 44820270 - 44820323
Alignment:
Q  24 atttctatcattttattcttaagaatcaacaaatataacttaatacaaacacac 77  Q
    |||||||||||||||||| | | ||||||||| |||||||| | ||||||||||    
T  44820270 atttctatcattttattcctgaaaatcaacaattataacttgaaacaaacacac 44820323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 77
Target Start/End: Original strand, 11000712 - 11000772
Alignment:
Q  17 tatatatatttctatcattttattcttaagaatcaacaaatataacttaatacaaacacac 77  Q
    ||||||||||| ||||||||||||   | ||||||||| ||||||||| | ||||||||||    
T  11000712 tatatatatttatatcattttatttccaggaatcaacatatataacttgaaacaaacacac 11000772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 24 - 76
Target Start/End: Original strand, 19156633 - 19156685
Alignment:
Q  24 atttctatcattttattcttaagaatcaacaaatataacttaatacaaacaca 76  Q
    |||||||||||||||||||| | |||  ||||||||||||| | |||||||||    
T  19156633 atttctatcattttattcttgaaaatatacaaatataacttgaaacaaacaca 19156685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 24 - 76
Target Start/End: Original strand, 20756032 - 20756084
Alignment:
Q  24 atttctatcattttattcttaagaatcaacaaatataacttaatacaaacaca 76  Q
    |||||||||||||||||||| | |||  ||||||||||||| | |||||||||    
T  20756032 atttctatcattttattcttgaaaatatacaaatataacttgaaacaaacaca 20756084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 11 - 77
Target Start/End: Original strand, 25932448 - 25932514
Alignment:
Q  11 cataggtatatatatttctatcattttattcttaagaatcaacaaatataacttaatacaaacacac 77  Q
    |||||| ||||| |||||||||||||||||| || |||||||||| |||||||| | ||||||||||    
T  25932448 cataggcatatacatttctatcattttattcctaggaatcaacaattataacttgaaacaaacacac 25932514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 11 - 84
Target Start/End: Original strand, 23686794 - 23686867
Alignment:
Q  11 cataggtatatatatttctatcattttattcttaagaatcaacaaatataacttaatacaaacacactcttata 84  Q
    |||||| ||||||||||||||||||||||||    |||||||||| |||||||| | |||||||||| ||||||    
T  23686794 cataggcatatatatttctatcattttattcccgggaatcaacaattataacttgaaacaaacacacccttata 23686867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 11 - 82
Target Start/End: Original strand, 35999693 - 35999764
Alignment:
Q  11 cataggtatatatatttctatcattttattcttaagaatcaacaaatataacttaatacaaacacactctta 82  Q
    |||||| ||||| ||||||||||||||||||   ||||||||||| |||||||| | |||||||||| ||||    
T  35999693 cataggcatatacatttctatcattttattcccgagaatcaacaattataacttgaaacaaacacaccctta 35999764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 18 - 64
Target Start/End: Complemental strand, 9327306 - 9327260
Alignment:
Q  18 atatatatttctatcattttattcttaagaatcaacaaatataactt 64  Q
    ||||||||||||| ||||||||| ||| |||||||||||||||||||    
T  9327306 atatatatttctaacattttatttttaggaatcaacaaatataactt 9327260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 18 - 64
Target Start/End: Complemental strand, 9374065 - 9374019
Alignment:
Q  18 atatatatttctatcattttattcttaagaatcaacaaatataactt 64  Q
    ||||||||||||| ||||||||| ||| |||||||||||||||||||    
T  9374065 atatatatttctaacattttatttttaggaatcaacaaatataactt 9374019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 18 - 64
Target Start/End: Complemental strand, 9382343 - 9382297
Alignment:
Q  18 atatatatttctatcattttattcttaagaatcaacaaatataactt 64  Q
    ||||||||||||| ||||||||| ||| |||||||||||||||||||    
T  9382343 atatatatttctaacattttatttttaggaatcaacaaatataactt 9382297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 74
Target Start/End: Complemental strand, 10400866 - 10400810
Alignment:
Q  18 atatatatttctatcattttattcttaagaatcaacaaatataacttaatacaaaca 74  Q
    ||||| ||||||||||||||||||  || |||||||||||||||||| | |||||||    
T  10400866 atatacatttctatcattttattcccaaaaatcaacaaatataacttgaaacaaaca 10400810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 82
Target Start/End: Original strand, 30415916 - 30415980
Alignment:
Q  18 atatatatttctatcattttattcttaagaatcaacaaatataacttaatacaaacacactctta 82  Q
    ||||||||| ||||||||||||| |   ||||||||||||||||||| | |||||||||| ||||    
T  30415916 atatatattcctatcattttattatcgggaatcaacaaatataacttgaaacaaacacaccctta 30415980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 11 - 82
Target Start/End: Original strand, 40435907 - 40435978
Alignment:
Q  11 cataggtatatatatttctatcattttattcttaagaatcaacaaatataacttaatacaaacacactctta 82  Q
    |||||| ||||| ||||||||||||||||||    |||||||||| |||||||| | |||||||||| ||||    
T  40435907 cataggcatatacatttctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccctta 40435978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 11 - 82
Target Start/End: Original strand, 48879332 - 48879403
Alignment:
Q  11 cataggtatatatatttctatcattttattcttaagaatcaacaaatataacttaatacaaacacactctta 82  Q
    |||||| ||||| ||||||||||||||||||    |||||||||| |||||||| | |||||||||| ||||    
T  48879332 cataggcatatacatttctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccctta 48879403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 11 - 77
Target Start/End: Original strand, 936133 - 936199
Alignment:
Q  11 cataggtatatatatttctatcattttattcttaagaatcaacaaatataacttaatacaaacacac 77  Q
    |||||| ||||||||| | |||||||||||||   |||||||||| |||||||| | ||||||||||    
T  936133 catagggatatatattccaatcattttattctcgggaatcaacaattataacttgaaacaaacacac 936199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 11 - 77
Target Start/End: Original strand, 43723271 - 43723337
Alignment:
Q  11 cataggtatatatatttctatcattttattcttaagaatcaacaaatataacttaatacaaacacac 77  Q
    |||||| ||||| ||||||||||||||||| |   |||||||||| |||||||| | ||||||||||    
T  43723271 cataggcatatacatttctatcattttattttcgggaatcaacaattataacttgaaacaaacacac 43723337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 11 - 77
Target Start/End: Original strand, 47670369 - 47670435
Alignment:
Q  11 cataggtatatatatttctatcattttattcttaagaatcaacaaatataacttaatacaaacacac 77  Q
    |||||| ||||| |||||||||||||||||   | |||||||||| |||||||| | ||||||||||    
T  47670369 cataggcatatacatttctatcattttatttccaggaatcaacaattataacttgaaacaaacacac 47670435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 18 - 77
Target Start/End: Original strand, 36860132 - 36860190
Alignment:
Q  18 atatatatttctatcattttattcttaagaa-tcaacaaatataacttaatacaaacacac 77  Q
    |||||||||| ||||||||||||  |||||| |||||||||||||||| | ||||||||||    
T  36860132 atatatatttatatcattttatt--taagaaatcaacaaatataacttgaaacaaacacac 36860190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 21 - 77
Target Start/End: Original strand, 38414223 - 38414277
Alignment:
Q  21 tatatttctatcattttattcttaagaatcaacaaatataacttaatacaaacacac 77  Q
    |||||||||||||||||||||    ||||||||||||||||||| | ||||||||||    
T  38414223 tatatttctatcattttattccc--gaatcaacaaatataactttagacaaacacac 38414277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 18 - 73
Target Start/End: Original strand, 143623 - 143678
Alignment:
Q  18 atatatatttctatcattttattcttaagaatcaacaaatataacttaatacaaac 73  Q
    ||||||||||||||||||||||||| | |||||||||||| |||||| | ||||||    
T  143623 atatatatttctatcattttattctcaggaatcaacaaatttaacttgaaacaaac 143678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000002; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 18 - 77
Target Start/End: Complemental strand, 6705826 - 6705767
Alignment:
Q  18 atatatatttctatcattttattcttaagaatcaacaaatataacttaatacaaacacac 77  Q
    ||||||||||||| ||||||||||  | ||||||||||||||||||| | ||||||||||    
T  6705826 atatatatttctaccattttattccaatgaatcaacaaatataacttgaaacaaacacac 6705767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 11 - 82
Target Start/End: Original strand, 2657703 - 2657774
Alignment:
Q  11 cataggtatatatatttctatcattttattcttaagaatcaacaaatataacttaatacaaacacactctta 82  Q
    |||||||||||| ||| ||||||||||||||    |||||||||| |||||||| | |||||||||| ||||    
T  2657703 cataggtatatacattcctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccctta 2657774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 11 - 82
Target Start/End: Original strand, 8029336 - 8029407
Alignment:
Q  11 cataggtatatatatttctatcattttattcttaagaatcaacaaatataacttaatacaaacacactctta 82  Q
    |||||| ||||| ||||||||||||||||||    |||||||||| |||||||| | |||||||||| ||||    
T  8029336 cataggcatatacatttctatcattttattcccgggaatcaacaattataacttgaaacaaacacaccctta 8029407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0702 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0702
Description:

Target: scaffold0702; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 11 - 77
Target Start/End: Complemental strand, 3633 - 3567
Alignment:
Q  11 cataggtatatatatttctatcattttattcttaagaatcaacaaatataacttaatacaaacacac 77  Q
    |||||| |||||||||| ||| ||||||||| ||  |||| ||||||||||||| | ||||||||||    
T  3633 cataggcatatatatttttataattttattcctagaaatctacaaatataacttgaaacaaacacac 3567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0662 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0662
Description:

Target: scaffold0662; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 11 - 77
Target Start/End: Original strand, 4471 - 4537
Alignment:
Q  11 cataggtatatatatttctatcattttattcttaagaatcaacaaatataacttaatacaaacacac 77  Q
    |||||| |||||||||| ||| ||||||||| ||  |||| ||||||||||||| | ||||||||||    
T  4471 cataggcatatatatttttataattttattcctagaaatctacaaatataacttgaaacaaacacac 4537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University