View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2864_low_1 (Length: 589)
Name: NF2864_low_1
Description: NF2864
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2864_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 253; Significance: 1e-140; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 19 - 318
Target Start/End: Original strand, 16644704 - 16645006
Alignment:
| Q |
19 |
ccaatgcctatttagacataagagtccaaaacttggctgatcgatgccctattgtaatcacatgatccccacaccagttattgtcattaccaatactttg |
118 |
Q |
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| T |
16644704 |
ccaatgcctatttagacgtaagagtccaaagcttggctgatcgatgccctattgtaatcacatgatccccacaccagttattgtcattaccaatactttg |
16644803 |
T |
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| Q |
119 |
tactc---cattgacaaggaacagatgaaaagattcttttttagttgttgaaagagagggctgaatctcgtaaatacttacaactactatatatattttc |
215 |
Q |
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| T |
16644804 |
tagtcatgcattgaaaaggaacagatgaaaagattcttttttagttgttgaaagagagggctgaatctcgtaaatacttacaactactatatattttttc |
16644903 |
T |
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| Q |
216 |
atgcctgtaaagggcacgaatgctagtgcagtttagagttgcatccactacactagtaagtagtagtaacatattacattgttaaaattacgaaactagt |
315 |
Q |
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| T |
16644904 |
atgcctgtaaagagaacgaatgctagtgcattttagagttgcatccactacactagtaagtagtagtaacatattacattgttaaaaatacgaaactagt |
16645003 |
T |
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| Q |
316 |
gag |
318 |
Q |
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||| |
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| T |
16645004 |
gag |
16645006 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 394 - 536
Target Start/End: Original strand, 16645071 - 16645213
Alignment:
| Q |
394 |
acatggatcattcgagtgaggaatcaactttatgaactgatcgagagaaagccaatacatcattaggagcttgagctgtttcaccatttgaaattatgtt |
493 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16645071 |
acatgaatcattcgagtgaggaatcaactttatgaactgatcgagagaaagccaatacatcattaggagcttgagctgtttcaccatttgaaattatgtt |
16645170 |
T |
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| Q |
494 |
gtcacgaatgatccttttggtcactgtatcactctctaattcc |
536 |
Q |
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| T |
16645171 |
gtcacgaatgatccttttggtcactgtgtcattctctaattcc |
16645213 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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