View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2864_low_2 (Length: 385)
Name: NF2864_low_2
Description: NF2864
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2864_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 291; Significance: 1e-163; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 22 - 371
Target Start/End: Complemental strand, 6700164 - 6699815
Alignment:
| Q |
22 |
cattcataaataagatttttgtacacattatatctctttgaatggagcaagttgaatttaattccttcaaaagagaggtaagttataccacatgtacata |
121 |
Q |
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| T |
6700164 |
cattcataaataagatgtttgt-cacattatatctctttgaatggagcaagttgaagttaattccttcaaaagagaggtaagttataccacatgtacata |
6700066 |
T |
|
| Q |
122 |
ttgcttacagtttattttctgtcataatatttggataactgatatttatcaatgcaaattaggtgcataattgtaatccttcattcattctaatctaaaa |
221 |
Q |
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||||||||| ||||| |||||| |||||||| |||| |||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||| |
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| T |
6700065 |
ttgcttacactttatattctgttataatattgggatgactgatatttatcaatgcaaattaggtgcataattgcaagccttcattcattctaatctaaaa |
6699966 |
T |
|
| Q |
222 |
-cagtagaaagatttagagttgaattttgtttatcatttgtcaaggacactataccaaatatacatcgaaataaagtatgctacataaattcactaataa |
320 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
6699965 |
ccagtagaaagatttagagttgaattttgtttatcatttgtcaaggacactataccaaatatacatcgaaacaaagtatgctacataaattcactaataa |
6699866 |
T |
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| Q |
321 |
attggtgttgaataggacatttgagtaactaaatcctccaccaattcatct |
371 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6699865 |
attggtgctgaataggacatttgagtaactaaatcctccaccaattcatct |
6699815 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 290; Significance: 1e-163; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 19 - 371
Target Start/End: Original strand, 20913779 - 20914132
Alignment:
| Q |
19 |
ttccattcataaataagatttttgtacacattatatctctttgaatggagcaagttgaatttaattccttcaaaagagaggtaagttataccacatgtac |
118 |
Q |
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| T |
20913779 |
ttccattcataaataaggtttttgtacacattatatctctttgaatggagcaagttgaagttaattccttcaaaagagaggtaagttttacgacatgtac |
20913878 |
T |
|
| Q |
119 |
atattgcttacagtttattttctgtcataatatttggataactgatatttatcaatgcaaattaggtgcataattgtaatccttcattcattctaatcta |
218 |
Q |
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|||||||||||| ||||| ||||||||| ||||| |||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| || |
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| T |
20913879 |
atattgcttacactttatcttctgtcatcatattgggatgactgatatttatcaatgcaaattaggtgcataattgtaatccttcgttcattctaatata |
20913978 |
T |
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| Q |
219 |
aaa-cagtagaaagatttagagttgaattttgtttatcatttgtcaaggacactataccaaatatacatcgaaataaagtatgctacataaattcactaa |
317 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
20913979 |
aaaccagtagaaagatttagagttgaattttgtttatcatttgtcaaggacactataccaaatatacatcgaaacgaagtatgctacataaattcactaa |
20914078 |
T |
|
| Q |
318 |
taaattggtgttgaataggacatttgagtaactaaatcctccaccaattcatct |
371 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20914079 |
taaattggtgctgaataggacatttgagtaactaaatcctccaccaattcatct |
20914132 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 283 - 344
Target Start/End: Original strand, 21137695 - 21137756
Alignment:
| Q |
283 |
acatcgaaataaagtatgctacataaattcactaataaattggtgttgaataggacatttga |
344 |
Q |
| |
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| T |
21137695 |
acatcgaaacaaagtatgctacataaattcattaataaattggaactgaataagacatttga |
21137756 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 98; Significance: 4e-48; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 181 - 325
Target Start/End: Complemental strand, 2303878 - 2303734
Alignment:
| Q |
181 |
taggtgcataattgtaatccttcattcattctaatctaaaac-agtagaaagatttagagttgaattttgtttatcatttgtcaaggacactataccaaa |
279 |
Q |
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|
|||||||||||||| ||||||||||||||||||||||||||| || | ||||||||||||| ||||| |||||||||||| ||||| ||| ||||||||| |
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| T |
2303878 |
taggtgcataattgcaatccttcattcattctaatctaaaaccagca-aaagatttagagtcgaattctgtttatcatttttcaagtacattataccaaa |
2303780 |
T |
|
| Q |
280 |
tatacatcgaaataaagtatgctacataaattcactaataaattgg |
325 |
Q |
| |
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|||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
2303779 |
tatacatcgaaacaaagtatgctacataaattcactaataaattgg |
2303734 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 93; Significance: 3e-45; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 44 - 215
Target Start/End: Complemental strand, 25534015 - 25533843
Alignment:
| Q |
44 |
acacattatatc-tctttgaatggagcaagttgaatttaattccttcaaaagagaggtaagttataccacatgtacatattgcttacagtttattttctg |
142 |
Q |
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|
|||||||||||| |||||||||||||||||||||| ||||||||||| |||||||||||| ||||||||| ||| || | ||||||| | ||| ||||| |
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| T |
25534015 |
acacattatatcctctttgaatggagcaagttgaagttaattccttccaaagagaggtaaattataccacgtgttcagaatgcttaccctctatcttctg |
25533916 |
T |
|
| Q |
143 |
tcataatatttggataactgatatttatcaatgcaaattaggtgcataattgtaatccttcattcattctaat |
215 |
Q |
| |
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|||||||||| |||| ||||||||||| |||||||||||| | |||||||| |||||||||||||||||||| |
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| T |
25533915 |
tcataatattgggatgactgatatttaccaatgcaaattaagcccataattgcaatccttcattcattctaat |
25533843 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 225 - 326
Target Start/End: Complemental strand, 25533091 - 25532990
Alignment:
| Q |
225 |
tagaaagatttagagttgaattttgtttatcatttgtcaaggacactataccaaatatacatcgaaataaagtatgctacataaattcactaataaattg |
324 |
Q |
| |
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||||||||||| |||| ||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||| || |
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| T |
25533091 |
tagaaagatttgaagtttaattttgtttatcatttgtcaaggacactataccaaagatacatcgaaacaaagtatgctacataaattcactaataaaatg |
25532992 |
T |
|
| Q |
325 |
gt |
326 |
Q |
| |
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|| |
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|
| T |
25532991 |
gt |
25532990 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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