View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2865-Insertion-10 (Length: 226)

Name: NF2865-Insertion-10
Description: NF2865
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2865-Insertion-10
NF2865-Insertion-10
[»] chr5 (16 HSPs)
chr5 (8-226)||(37704241-37704459)
chr5 (87-226)||(37391389-37391528)
chr5 (95-225)||(37595904-37596037)
chr5 (87-226)||(37698366-37698505)
chr5 (95-225)||(37534674-37534804)
chr5 (95-225)||(37641455-37641585)
chr5 (93-225)||(37441518-37441650)
chr5 (95-225)||(37713198-37713328)
chr5 (8-88)||(37437445-37437525)
chr5 (118-226)||(37380802-37380910)
chr5 (87-219)||(37411754-37411886)
chr5 (8-78)||(37698571-37698641)
chr5 (87-225)||(37437275-37437413)
chr5 (130-225)||(37825487-37825582)
chr5 (125-220)||(37399289-37399384)
chr5 (87-219)||(37430337-37430469)
[»] chr3 (1 HSPs)
chr3 (95-225)||(14554633-14554760)
[»] chr4 (3 HSPs)
chr4 (95-219)||(24216193-24216317)
chr4 (87-226)||(16841327-16841466)
chr4 (22-88)||(16841203-16841272)


Alignment Details
Target: chr5 (Bit Score: 219; Significance: 1e-120; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 8 - 226
Target Start/End: Complemental strand, 37704459 - 37704241
Alignment:
Q  8 tttggtccttgccccttagtttcaggttatgtttcctatataaatagaggctaatcaattggtatatcctaaatcatcaaaatgcggtccttttttattc 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37704459 tttggtccttgccccttagtttcaggttatgtttcctatataaatagaggctaatcaattggtatatcctaaatcatcaaaatgcggtccttttttattc 37704360  T
Q  108 tattgccttattttacttttcacttgttcttgttattgctgcttactcattttacttcctacactttctcattgtgcagccaacatgatagctccgcctt 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37704359 tattgccttattttacttttcacttgttcttgttattgctgcttactcattttacttcctacactttctcattgtgcagccaacatgatagctccgcctt 37704260  T
Q  208 gttacaattcaaacactca 226  Q
    |||||||||||||||||||    
T  37704259 gttacaattcaaacactca 37704241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 87 - 226
Target Start/End: Original strand, 37391389 - 37391528
Alignment:
Q  87 aaatgcggtccttttttattctattgccttattttacttttcacttgttcttgttattgctgcttactcattttacttcctacactttctcattgtgcag 186  Q
    ||||| ||||||| |||||| |||||||||||||||| |||||||||||| |||| ||| |||||||||||||||||||||| ||| ||||||||||||     
T  37391389 aaatggggtccttgtttattttattgccttattttacctttcacttgttcatgttgttgttgcttactcattttacttcctatactctctcattgtgcaa 37391488  T
Q  187 ccaacatgatagctccgccttgttacaattcaaacactca 226  Q
    ||  ||||||||||| |||||| ||||||||||| |||||    
T  37391489 ccttcatgatagctctgccttgctacaattcaaaaactca 37391528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 95 - 225
Target Start/End: Complemental strand, 37596037 - 37595904
Alignment:
Q  95 tccttttttattctattgccttattttacttttcacttgttcttgttattg---ctgcttactcattttacttcctacactttctcattgtgcagccaac 191  Q
    ||||||||||||| ||||||||||||||| |||||||| |||||||| |||   |||||||||||||||||||||||||||||||||||||||| | |||    
T  37596037 tccttttttattccattgccttattttacctttcactttttcttgttgttgttgctgcttactcattttacttcctacactttctcattgtgcaacaaac 37595938  T
Q  192 atgatagctccgccttgttacaattcaaacactc 225  Q
    |||| | ||| |||||||||||||||||| ||||    
T  37595937 atgacaactctgccttgttacaattcaaaaactc 37595904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 87 - 226
Target Start/End: Complemental strand, 37698505 - 37698366
Alignment:
Q  87 aaatgcggtccttttttattctattgccttattttacttttcacttgttcttgttattgctgcttactcattttacttcctacactttctcattgtgcag 186  Q
    ||||| ||||||||||||||||||||||||||||| | |||||||| |||||||| ||| |||||||||||||||||||||||||  ||||||| ||||     
T  37698505 aaatggggtccttttttattctattgccttattttgcctttcactttttcttgttgttgttgcttactcattttacttcctacacactctcattatgcaa 37698406  T
Q  187 ccaacatgatagctccgccttgttacaattcaaacactca 226  Q
    ||| ||||| || || |||||||||||||||||| |||||    
T  37698405 ccatcatgacagttctgccttgttacaattcaaaaactca 37698366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 95 - 225
Target Start/End: Complemental strand, 37534804 - 37534674
Alignment:
Q  95 tccttttttattctattgccttattttacttttcacttgttcttgttattgctgcttactcattttacttcctacactttctcattgtgcagccaacatg 194  Q
    ||||||||||||| ||||||||||||||| |||||||| |||||||| ||| || ||||||||||||||||||||||||||||| |||||| | ||||||    
T  37534804 tccttttttattccattgccttattttacctttcactttttcttgttgttgttgattactcattttacttcctacactttctcactgtgcaacaaacatg 37534705  T
Q  195 atagctccgccttgttacaattcaaacactc 225  Q
    | | ||| |||||||||||||||||| ||||    
T  37534704 acaactctgccttgttacaattcaaaaactc 37534674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 95 - 225
Target Start/End: Complemental strand, 37641585 - 37641455
Alignment:
Q  95 tccttttttattctattgccttattttacttttcacttgttcttgttattgctgcttactcattttacttcctacactttctcattgtgcagccaacatg 194  Q
    ||||||||||||| ||||||||||||||| |||||||| || ||||| ||| || ||||||||||||||||||||||||||||| |||||| ||||||||    
T  37641585 tccttttttattccattgccttattttacctttcacttcttgttgttgttgttgattactcattttacttcctacactttctcactgtgcaaccaacatg 37641486  T
Q  195 atagctccgccttgttacaattcaaacactc 225  Q
    | | ||| |||||||||||||||||| ||||    
T  37641485 acacctctgccttgttacaattcaaaaactc 37641455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 93 - 225
Target Start/End: Complemental strand, 37441650 - 37441518
Alignment:
Q  93 ggtccttttttattctattgccttattttacttttcacttgttcttgttattgctgcttactcattttacttcctacactttctcattgtgcagccaaca 192  Q
    |||||||||||||| |||||||||||||||| |||||| ||||||| || |||||||||||||||||||||||||| ||||||||| |||| | | ||||    
T  37441650 ggtccttttttattttattgccttattttacctttcacatgttcttcttgttgctgcttactcattttacttcctatactttctcactgtgaaacaaaca 37441551  T
Q  193 tgatagctccgccttgttacaattcaaacactc 225  Q
    ||| | ||| |||||||||||||||||| ||||    
T  37441550 tgacacctctgccttgttacaattcaaaaactc 37441518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 95 - 225
Target Start/End: Complemental strand, 37713328 - 37713198
Alignment:
Q  95 tccttttttattctattgccttattttacttttcacttgttcttgttattgctgcttactcattttacttcctacactttctcattgtgcagccaacatg 194  Q
    ||||||||||||| ||||||||||||||| |||||||| |||| ||| ||| |||||||||||||||||||| ||||||||||| |||||| | ||||||    
T  37713328 tccttttttattccattgccttattttacctttcacttcttctcgttgttgttgcttactcattttacttcccacactttctcactgtgcaacaaacatg 37713229  T
Q  195 atagctccgccttgttacaattcaaacactc 225  Q
    | | ||| |||||||||||||||||| ||||    
T  37713228 acaactctgccttgttacaattcaaaaactc 37713198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 8 - 88
Target Start/End: Complemental strand, 37437525 - 37437445
Alignment:
Q  8 tttggtccttgccccttagtttcaggttatgtttcctatataaatagaggctaatcaattggtatatcctaaatcatcaaa 88  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  37437525 tttggtccttgccccttagtttcaagttatgtttcctatataaatagaggctaatcatttggtatatcctaaatcatcaaa 37437445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 118 - 226
Target Start/End: Original strand, 37380802 - 37380910
Alignment:
Q  118 ttttacttttcacttgttcttgttattgctgcttactcattttacttcctacactttctcattgtgcagccaacatgatagctccgccttgttacaattc 217  Q
    |||||| ||||||||||||||||| ||| |||||||||||||||||||| |||||||||||||||||| |||||||||||  || ||||||||||| |||    
T  37380802 ttttacctttcacttgttcttgttgttgttgcttactcattttacttcccacactttctcattgtgcaaccaacatgatacatctgccttgttacatttc 37380901  T
Q  218 aaacactca 226  Q
    ||| |||||    
T  37380902 aaaaactca 37380910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 87 - 219
Target Start/End: Original strand, 37411754 - 37411886
Alignment:
Q  87 aaatgcggtccttttttattctattgccttattttacttttcacttgttcttgttattgctgcttactcattttacttcctacactttctcattgtgcag 186  Q
    ||||| |||||| |||| |||||||| | |||||||| |||||||||||||||||  ||||| |||||||||||||||||||||| |||||||| ||||     
T  37411754 aaatggggtcctgttttgttctattgtcctattttacctttcacttgttcttgttgctgctgtttactcattttacttcctacaccttctcattatgcaa 37411853  T
Q  187 ccaacatgatagctccgccttgttacaattcaa 219  Q
    | | ||||| ||||  |||||||||||||||||    
T  37411854 ctatcatgacagctttgccttgttacaattcaa 37411886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 8 - 78
Target Start/End: Complemental strand, 37698641 - 37698571
Alignment:
Q  8 tttggtccttgccccttagtttcaggttatgtttcctatataaatagaggctaatcaattggtatatccta 78  Q
    |||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37698641 tttggtcctttccccgtagtttcaggttatgtttcctatataaatagaggctaatcaattggtatatccta 37698571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 87 - 225
Target Start/End: Complemental strand, 37437413 - 37437275
Alignment:
Q  87 aaatgcggtccttttttattctattgccttattttacttttcacttgttcttgttattgctgcttactcattttacttcctacactttctcattgtgcag 186  Q
    ||||| |||||||||||||||| ||||||| |||| |  |||||||||||| ||| ||| |||||||||| |||||| || ||||||||||||| ||||     
T  37437413 aaatggggtccttttttattcttttgccttgttttgcccttcacttgttctcgttgttgttgcttactcactttactacccacactttctcattatgcaa 37437314  T
Q  187 ccaacatgatagctccgccttgttacaattcaaacactc 225  Q
    ||| ||||| | ||| ||||| |||||||||||| ||||    
T  37437313 ccatcatgacacctctgccttattacaattcaaaaactc 37437275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 130 - 225
Target Start/End: Complemental strand, 37825582 - 37825487
Alignment:
Q  130 cttgttcttgttattgctgcttactcattttacttcctacactttctcattgtgcagccaacatgatagctccgccttgttacaattcaaacactc 225  Q
    |||||||||||| ||| || ||||||||||||||||||||||||||||| |||||| | ||||||| | ||| |||||||||||||||||| ||||    
T  37825582 cttgttcttgttgttgttgattactcattttacttcctacactttctcactgtgcaacaaacatgacaactctgccttgttacaattcaaaaactc 37825487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 125 - 220
Target Start/End: Original strand, 37399289 - 37399384
Alignment:
Q  125 tttcacttgttcttgttattgctgcttactcattttacttcctacactttctcattgtgcagccaacatgatagctccgccttgttacaattcaaa 220  Q
    ||||||||||||||||| ||| || |||||||||||||||| |||||||||||| | |||| ||| ||||| | ||| ||||||||||||||||||    
T  37399289 tttcacttgttcttgttgttgttgattactcattttacttcatacactttctcactatgcaaccatcatgacacctctgccttgttacaattcaaa 37399384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 87 - 219
Target Start/End: Complemental strand, 37430469 - 37430337
Alignment:
Q  87 aaatgcggtccttttttattctattgccttattttacttttcacttgttcttgttattgctgcttactcattttacttcctacactttctcattgtgcag 186  Q
    ||||| ||||||||| | ||||||| |||||| || | |||||||||||||||||  ||||||| |||| |||||||||||| || || ||| ||||||     
T  37430469 aaatggggtccttttgttttctatttccttatcttgcctttcacttgttcttgttgatgctgctaactctttttacttcctatacattttcaatgtgcaa 37430370  T
Q  187 ccaacatgatagctccgccttgttacaattcaa 219  Q
     || ||||| || || |||||||||||||||||    
T  37430369 gcatcatgacagttctgccttgttacaattcaa 37430337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 81; Significance: 3e-38; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 95 - 225
Target Start/End: Complemental strand, 14554760 - 14554633
Alignment:
Q  95 tccttttttattctattgccttattttacttttcacttgttcttgttattgctgcttactcattttacttcctacactttctcattgtgcagccaacatg 194  Q
    ||||||||||||||||||||||||||||| |||||||| |||||   |||| |||||||||||||||||||||| |||||||||||||||| ||||||||    
T  14554760 tccttttttattctattgccttattttacctttcactttttctt---attgttgcttactcattttacttcctatactttctcattgtgcaaccaacatg 14554664  T
Q  195 atagctccgccttgttacaattcaaacactc 225  Q
    | | ||| |||||||||||||||||| ||||    
T  14554663 acacctctgccttgttacaattcaaaaactc 14554633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 61; Significance: 2e-26; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 95 - 219
Target Start/End: Original strand, 24216193 - 24216317
Alignment:
Q  95 tccttttttattctattgccttattttacttttcacttgttcttgttattgctgcttactcattttacttcctacactttctcattgtgcagccaacatg 194  Q
    ||||||||||||||| ||||| |||| || |||||||||||| |||| ||| ||||||||||||||||||| ||||||| |||||| |||| ||| ||||    
T  24216193 tccttttttattctaatgcctcatttgacctttcacttgttcatgttgttgttgcttactcattttacttcttacacttactcattctgcaaccatcatg 24216292  T
Q  195 atagctccgccttgttacaattcaa 219  Q
    | || || || ||||||||||||||    
T  24216293 acagttctgcattgttacaattcaa 24216317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 87 - 226
Target Start/End: Original strand, 16841327 - 16841466
Alignment:
Q  87 aaatgcggtccttttttattctattgccttattttacttttcacttgttcttgttattgctgcttactcattttacttcctacactttctcattgtgcag 186  Q
    ||||| |||||||||||||| | ||||||| |||| |  |||||||||||||  |  ||||||||||||| ||||||||  ||||||| ||||| ||||     
T  16841327 aaatggggtccttttttattgttttgccttgttttgcccttcacttgttctttgtgctgctgcttactcactttacttcacacactttgtcattctgcaa 16841426  T
Q  187 ccaacatgatagctccgccttgttacaattcaaacactca 226  Q
    ||||||||| ||||| || |||||||| |||||| |||||    
T  16841427 ccaacatgacagctctgctttgttacatttcaaaaactca 16841466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 22 - 88
Target Start/End: Original strand, 16841203 - 16841272
Alignment:
Q  22 cttagtttcaggttatgtttcctatataaata---gaggctaatcaattggtatatcctaaatcatcaaa 88  Q
    ||||||||||||||||||||||||||||||||   ||||||||||| |||||||||| ||||||||||||    
T  16841203 cttagtttcaggttatgtttcctatataaatagaggaggctaatcagttggtatatcgtaaatcatcaaa 16841272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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