View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2865-Insertion-11 (Length: 162)
Name: NF2865-Insertion-11
Description: NF2865
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2865-Insertion-11 |
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| [»] chr5 (4 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 151; Significance: 3e-80; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 151; E-Value: 3e-80
Query Start/End: Original strand, 8 - 162
Target Start/End: Complemental strand, 14242236 - 14242082
Alignment:
| Q |
8 |
tgacactgttactcctttttcaaatgctggattttggagtcttctcaccttcacttgggtgagtccacttatagcatttggcaataagaagacgttagac |
107 |
Q |
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| T |
14242236 |
tgacactgttactcctttttcaaatgctggaatttggagtcttctcaccttcacttgggtgagtccacttatagcatttggcaataagaagacgttagac |
14242137 |
T |
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| Q |
108 |
cttgaggatgttcctcagctagatagtagagatagtgtggttggagcttttccta |
162 |
Q |
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| T |
14242136 |
cttgaggatgttcctcagctagatagtagagatagtgtggttggagcttttccta |
14242082 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 151; E-Value: 3e-80
Query Start/End: Original strand, 8 - 162
Target Start/End: Original strand, 14371085 - 14371239
Alignment:
| Q |
8 |
tgacactgttactcctttttcaaatgctggattttggagtcttctcaccttcacttgggtgagtccacttatagcatttggcaataagaagacgttagac |
107 |
Q |
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| T |
14371085 |
tgacactgttgctcctttttcaaatgctggattttggagtcttctcaccttcacttgggtgagtccacttatagcatttggcaataagaagacgttagac |
14371184 |
T |
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| Q |
108 |
cttgaggatgttcctcagctagatagtagagatagtgtggttggagcttttccta |
162 |
Q |
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| T |
14371185 |
cttgaggatgttcctcagctagatagtagagatagtgtggttggagcttttccta |
14371239 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 93; E-Value: 1e-45
Query Start/End: Original strand, 8 - 160
Target Start/End: Complemental strand, 41453251 - 41453099
Alignment:
| Q |
8 |
tgacactgttactcctttttcaaatgctggattttggagtcttctcaccttcacttgggtgagtccacttatagcatttggcaataagaagacgttagac |
107 |
Q |
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| T |
41453251 |
tgacactgttacccctttttctactgctggaattttgagtcttctcactttcacttgggtgggaccacttatagcatttggttataagaaaaacttagac |
41453152 |
T |
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| Q |
108 |
cttgaggatgttcctcagctagatagtagagatagtgtggttggagcttttcc |
160 |
Q |
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| T |
41453151 |
cttgaggatgttcctcagctagatagtggagatagtgtggtaggagcttttcc |
41453099 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 81; E-Value: 2e-38
Query Start/End: Original strand, 8 - 160
Target Start/End: Complemental strand, 41440082 - 41439930
Alignment:
| Q |
8 |
tgacactgttactcctttttcaaatgctggattttggagtcttctcaccttcacttgggtgagtccacttatagcatttggcaataagaagacgttagac |
107 |
Q |
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| T |
41440082 |
tgacactgttacccctttttctactgctggaattttgagtcttctcactttcacttgggtggaaccacttatagcatttggttataagaaaaccttagac |
41439983 |
T |
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| Q |
108 |
cttgaggatgttcctcagctagatagtagagatagtgtggttggagcttttcc |
160 |
Q |
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| T |
41439982 |
cttgaggatattcctcagctagatagtggagatagtgtcattggagtttttcc |
41439930 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 63; Significance: 1e-27; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 46 - 160
Target Start/End: Complemental strand, 21111625 - 21111511
Alignment:
| Q |
46 |
gtcttctcaccttcacttgggtgagtccacttatagcatttggcaataagaagacgttagaccttgaggatgttcctcagctagatagtagagatagtgt |
145 |
Q |
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| T |
21111625 |
gtcttctcactttcacttgggtgggaccacttatagcatttggcaataagaaagccttagacattgaggatgtcccttagctagatactggagatagtgt |
21111526 |
T |
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| Q |
146 |
ggttggagcttttcc |
160 |
Q |
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| T |
21111525 |
ggtttgagtttttcc |
21111511 |
T |
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