View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2865-Insertion-2 (Length: 878)

Name: NF2865-Insertion-2
Description: NF2865
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2865-Insertion-2
NF2865-Insertion-2
[»] chr6 (9 HSPs)
chr6 (24-550)||(22879313-22879838)
chr6 (24-550)||(22897433-22897952)
chr6 (546-878)||(22879863-22880192)
chr6 (546-878)||(22897977-22898307)
chr6 (688-757)||(2921875-2921944)
chr6 (688-756)||(13556037-13556105)
chr6 (683-757)||(16403550-16403624)
chr6 (689-756)||(13558009-13558076)
chr6 (688-756)||(2923191-2923259)
[»] chr1 (10 HSPs)
chr1 (24-543)||(17229540-17230065)
chr1 (707-830)||(24284777-24284900)
chr1 (546-593)||(17230098-17230145)
chr1 (622-679)||(17230171-17230229)
chr1 (688-832)||(24272700-24272843)
chr1 (688-755)||(22827060-22827127)
chr1 (688-756)||(22826665-22826733)
chr1 (688-756)||(22840997-22841065)
chr1 (61-143)||(19145684-19145766)
chr1 (61-143)||(23673020-23673102)
[»] chr2 (4 HSPs)
chr2 (24-679)||(198185-198856)
chr2 (691-830)||(37965516-37965656)
chr2 (688-827)||(8761205-8761345)
chr2 (701-812)||(10128473-10128584)
[»] chr7 (13 HSPs)
chr7 (273-410)||(19537875-19538012)
chr7 (694-818)||(1716668-1716792)
chr7 (24-76)||(19537758-19537810)
chr7 (191-249)||(19537813-19537871)
chr7 (688-755)||(7961806-7961873)
chr7 (685-772)||(11269969-11270056)
chr7 (492-550)||(19538065-19538123)
chr7 (725-813)||(1103129-1103217)
chr7 (718-830)||(1345063-1345173)
chr7 (429-473)||(19538017-19538061)
chr7 (688-732)||(36207996-36208040)
chr7 (623-657)||(19538205-19538239)
chr7 (61-143)||(41552008-41552090)
[»] chr4 (7 HSPs)
chr4 (680-814)||(32015133-32015267)
chr4 (688-830)||(53469686-53469828)
chr4 (694-755)||(27272600-27272661)
chr4 (688-772)||(10395975-10396059)
chr4 (688-825)||(53472575-53472710)
chr4 (692-813)||(13816914-13817035)
chr4 (61-143)||(55045307-55045389)
[»] chr3 (4 HSPs)
chr3 (688-755)||(25889653-25889720)
chr3 (707-829)||(31141359-31141481)
chr3 (61-143)||(4270753-4270835)
chr3 (688-750)||(30046454-30046515)
[»] chr5 (3 HSPs)
chr5 (688-781)||(26896583-26896676)
chr5 (688-752)||(19670702-19670766)
chr5 (685-772)||(32795560-32795647)
[»] scaffold0031 (1 HSPs)
scaffold0031 (54-144)||(40870-40959)
[»] chr8 (1 HSPs)
chr8 (688-812)||(33897182-33897306)


Alignment Details
Target: chr6 (Bit Score: 463; Significance: 0; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 463; E-Value: 0
Query Start/End: Original strand, 24 - 550
Target Start/End: Original strand, 22879313 - 22879838
Alignment:
Q  24 aacccaaaaggaaacaataagacagtaatgtaacagaagattttaacaaaattatgacctaaacttctaaatactatcaggcttcaattaactcataatt 123  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22879313 aacccaaaaggagacaataagacagtaatgtaacagaagattttaacaaaattatgacctaaacttctaaatactatcaggcttcaattaactcataatt 22879412  T
Q  124 ctcacaaaatcaatatcataatatgattaattgctacaccatgaaattttaattcctttgaagttggtcacaaataatttcaaatcaacacaaattacca 223  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22879413 ctcacaaaatcaatatcataatatgattaatttctacaccatgaaattctaattcctttgaagttggtcacaaataatttcaaatcaacacaaattacca 22879512  T
Q  224 tctcattagggtttaacaaatcatttnnnnnnnncattcaattttggagaaaaacattcaaaatgcagacagataaaccataaacacaaatcctagtcat 323  Q
    ||||||||||||||||||||||||||         |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22879513 tctcattagggtttaacaaatcatttaaaaaaaa-attcaattttggagaaaaacattcaaaatgcagacagataaaccataaacacaaatcctagtcat 22879611  T
Q  324 aaaatgaaatgaaaatttgagattaacgtcgcctaagaatagagagattgtgggaagaaaacaattgctgattgtgaaccgacagtgattgtgagacaac 423  Q
    ||||| ||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22879612 aaaataaaatgaaaatttgagattaacctcgcctaagaataaagagattgtgggaagaaaacaattgctgattgtgaaccgacagtgattgtgagacaac 22879711  T
Q  424 agttgtgtaacgaaaacggattggttggaagagatcgcagaagaggacaagcagtgggaggagatcgcgtgttggtagagagagacttctccagtgagga 523  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22879712 agttgtgtaacgaaaacgggttggttggaagagatcgcagaagaggacaagcagtgggaggagatcgcgtgttggtagagagagacttctccagtgagga 22879811  T
Q  524 tagagagagatgaaagatatgatgttt 550  Q
    |||||||| ||||||||||||||||||    
T  22879812 tagagagaaatgaaagatatgatgttt 22879838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 415; E-Value: 0
Query Start/End: Original strand, 24 - 550
Target Start/End: Original strand, 22897433 - 22897952
Alignment:
Q  24 aacccaaaaggaaacaataagacagtaatgtaacagaagattttaacaaaattatgacctaaacttctaaatactatcaggcttcaattaactcataatt 123  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22897433 aacccaaaaggagacaataagacagtaatgtaacagaagattttaacaaaattatgacctaaacttctaaatactatcaggcttcaattaactcataatt 22897532  T
Q  124 ctcacaaaatcaatatcataatatgattaattgctacaccatgaaattttaattcctttgaagttggtcacaaataatttcaaatcaacacaaattacca 223  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||         
T  22897533 ctcacaaaatcaatatcataatatgattaatttctacaccatgaaattctaattcctttgaagttgttcacaaataatttcaaatcaacacaaat----- 22897627  T
Q  224 tctcattagggtttaacaaatcatttnnnnnnnn-cattcaattttggagaaaaacattcaaaatgcagacagataaaccataaacacaaatcctagtca 322  Q
       ||||| |||||||||||||||||         ||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||    
T  22897628 ---cattaaggtttaacaaatcatttaaaaaaaaacattcaattttggagaaaaacattcaagatgcagacatataaaccataaacacaaatcctagtca 22897724  T
Q  323 taaaatgaaatgaaaatttgagattaacgtcgcctaagaatagagagattgtgggaagaaaacaattgctgattgtgaaccgacagtgattgtgagacaa 422  Q
    |||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22897725 taaaataaaatgaaaatttgagattaacctcgcctaagaatagagagattgtgggaagaaaacaattgctgattgtgaaccgacagtgattgtgagacaa 22897824  T
Q  423 cagttgtgtaacgaaaacggattggttggaagagatcgcagaagaggacaagcagtgggaggagatcgcgtgttggtagagagagacttctccagtgagg 522  Q
    |||||||||||||||||||| ||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  22897825 cagttgtgtaacgaaaacgggttggtcggaagagatcgcagaagaggacaaacagtgggaggagatcgcgtgttggtagagagagacttctccagtgagg 22897924  T
Q  523 atagagagagatgaaagatatgatgttt 550  Q
    ||||||||| ||||||||||||||||||    
T  22897925 atagagagaaatgaaagatatgatgttt 22897952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 546 - 878
Target Start/End: Original strand, 22879863 - 22880192
Alignment:
Q  546 tgttttaattttatttttaatgttttataagctgctttccatgtcactaggcctcnnnnnnnnnnnnnnnnnnnnngccaactcaagagtggtaggaggg 645  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||                     ||||||||||||||||||||||||    
T  22879863 tgttttaattttatttttaatgttttataagctgctttccatgtcactaggcctctttttttaattttttttt---gccaactcaagagtggtaggaggg 22879959  T
Q  646 tgtatcacctaaagggtgttcacgtatctttttcatatcagttatagcaaaacccactaattattgatgcaagaaatattaacacacaaaacctttattt 745  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  22879960 tgtatcacctaaagggtgttcacgtatctttttcatatcagttatagcaaaacccactaattattggtgcaagaaatattaacacacaaaacctttattt 22880059  T
Q  746 atatgaccaagtatttatatatttctttctattctctgttgtgtgacttttttccaacactaattcaaggtaaatttcaacaaataagaactttaaaata 845  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22880060 atatgaccaagtatttatatatttctttctattctctgttgtgtgacttttttccaacactaattcaaggtaaatttcaacaaataagaactttaaaata 22880159  T
Q  846 acaaacaaaaaattaacccacacatgttgcaac 878  Q
    |||||||||||||||||||||||||||||||||    
T  22880160 acaaacaaaaaattaacccacacatgttgcaac 22880192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 250; E-Value: 1e-138
Query Start/End: Original strand, 546 - 878
Target Start/End: Original strand, 22897977 - 22898307
Alignment:
Q  546 tgttttaattttatttttaatgttttataagctgctttccatgtcactaggcctcnnnnnnnnnnnnnnnnnnnnngccaactcaagagtggtaggaggg 645  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||                      |||||||||||||||||||||||    
T  22897977 tgttttaattttatttttaatgttttataagctgctttccatgtcactaggcctctttttttaatatttttttta--ccaactcaagagtggtaggaggg 22898074  T
Q  646 tgtatcacctaaagggtgttcacgtatctttttcatatcagttatagcaaaacccactaattattgatgcaagaaatattaacacacaaaacctttattt 745  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||    
T  22898075 tgtatcacctaaagggtgttcacgtatctttttcatatcagttatagcaaaacccactaattattggtgcaagaaatattaacacaaaaaacctttattt 22898174  T
Q  746 atatgaccaagtatttatatatttctttctattctctgttgtgtgacttttttccaacactaattcaaggtaaatttcaacaaataagaactttaaaata 845  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22898175 atatgaccaagtatttatatatttctttctattctctgttgtgtgacttttttccaacactaattcaaggtaaatttcaacaaataagaactttaaaata 22898274  T
Q  846 acaaacaaaaaattaacccacacatgttgcaac 878  Q
    |||||||||||||||||||||||||||| ||||    
T  22898275 acaaacaaaaaattaacccacacatgtttcaac 22898307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 688 - 757
Target Start/End: Original strand, 2921875 - 2921944
Alignment:
Q  688 tatagcaaaacccactaattattgatgcaagaaatattaacacacaaaacctttatttatatgaccaagt 757  Q
    |||||||||||||||||| ||||| ||||||||||| ||||||| || || ||||||||||| |||||||    
T  2921875 tatagcaaaacccactaactattggtgcaagaaatactaacacataagacttttatttatattaccaagt 2921944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 688 - 756
Target Start/End: Original strand, 13556037 - 13556105
Alignment:
Q  688 tatagcaaaacccactaattattgatgcaagaaatattaacacacaaaacctttatttatatgaccaag 756  Q
    |||||||||||||| ||| ||||| ||||||||||| ||||||||||  | ||||||||||||||||||    
T  13556037 tatagcaaaacccagtaactattggtgcaagaaatactaacacacaaggcttttatttatatgaccaag 13556105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 683 - 757
Target Start/End: Complemental strand, 16403624 - 16403550
Alignment:
Q  683 tcagttatagcaaaacccactaattattgatgcaagaaatattaacacacaaaacctttatttatatgaccaagt 757  Q
    |||| |||||||||| ||||||||||||| |||||  ||||| ||||||||| || |||||||||||||| ||||    
T  16403624 tcagctatagcaaaatccactaattattggtgcaaataatataaacacacaagacttttatttatatgactaagt 16403550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 689 - 756
Target Start/End: Original strand, 13558009 - 13558076
Alignment:
Q  689 atagcaaaacccactaattattgatgcaagaaatattaacacacaaaacctttatttatatgaccaag 756  Q
    ||||||||| ||||||| ||||| |||| |||||| ||||||||||  | ||||||||||||||||||    
T  13558009 atagcaaaatccactaactattggtgcatgaaatactaacacacaatgcttttatttatatgaccaag 13558076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 688 - 756
Target Start/End: Original strand, 2923191 - 2923259
Alignment:
Q  688 tatagcaaaacccactaattattgatgcaagaaatattaacacacaaaacctttatttatatgaccaag 756  Q
    |||| ||| ||||||||| ||||  |||||||| || |||||||||| || ||||||||||||||||||    
T  2923191 tataacaagacccactaactattagtgcaagaagtactaacacacaagacttttatttatatgaccaag 2923259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 370; Significance: 0; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 370; E-Value: 0
Query Start/End: Original strand, 24 - 543
Target Start/End: Original strand, 17229540 - 17230065
Alignment:
Q  24 aacccaaaaggaaacaataagacagtaatgtaacagaagattttaacaaaattatgacctaaacttctaaatactatcaggcttcaattaactcataatt 123  Q
    ||||||||||| |||||||||||| |||||||||||||||||||||||||||||||| |||||||||||| |||||| ||| |||||||||| |||||||    
T  17229540 aacccaaaaggcaacaataagacaataatgtaacagaagattttaacaaaattatgagctaaacttctaattactattaggtttcaattaacccataatt 17229639  T
Q  124 ctcacaaaatcaatatcat-----aatatgattaattgctacaccatgaaattttaattcctttgaagttggtcacaaataatttcaaatcaacacaaat 218  Q
    |||||||||||| ||||||     ||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  17229640 ctcacaaaatcagtatcattccctaatatgattaatttctacaccatgaaattctaattcctttgaagttggtcacaaataatttcaaatcaacacaaat 17229739  T
Q  219 taccatctcattagggtttaacaaatcatttnnnnnnnncattcaattttggagaaaaacattcaaaatgcagacagataaaccataaacacaaatccta 318  Q
    |||||||||||||||||||||||||||||||        ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  17229740 taccatctcattagggtttaacaaatcatttaaaaaaaacattcaattttggagaaaaacattcaaaatggagacagataaaccataaacacaaatccta 17229839  T
Q  319 gtcataaaatgaaatgaaaatttgagattaacgtcgcctaagaatagagagattgtgggaagaaaacaattgctgattgtgaaccgacagtgattgtgag 418  Q
     ||||||| | ||||||||||||||||||||| || |||||||||||||||||||||||||||||||| ||| |||||||||||||||||||  ||||||    
T  17229840 ttcataaagtaaaatgaaaatttgagattaacctcacctaagaatagagagattgtgggaagaaaacagttgttgattgtgaaccgacagtggctgtgag 17229939  T
Q  419 acaacagttg-tgtaacgaaaacggattggttggaagagatcgcagaagaggacaagcagtgggaggagatcgcgtgttggtagagagagacttctccag 517  Q
    |||||||||| |||||||||||||| | ||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||| |    
T  17229940 acaacagttgttgtaacgaaaacgggtcggttggaagagatcgcataagaggacaagcggtgggaggagatcgcgtgttggtagagagagacttctccgg 17230039  T
Q  518 tgaggatagagagagatgaaagatat 543  Q
    ||||||||||| ||||||||||||||    
T  17230040 tgaggatagagggagatgaaagatat 17230065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 707 - 830
Target Start/End: Complemental strand, 24284900 - 24284777
Alignment:
Q  707 tattgatgcaagaaatattaacacacaaaacctttatttatatgaccaagtatttatatatttctttctattctctgttgtgtgacttttttccaacact 806  Q
    ||||| ||||||||||||||||||||||  |||||||||||||  |||| |||||  |||||| ||  ||||||||| |||| |||||||| |||| | |    
T  24284900 tattggtgcaagaaatattaacacacaatgcctttatttatatagccaaatatttgcatatttgttcatattctctgatgtgggactttttcccaatatt 24284801  T
Q  807 aattcaaggtaaatttcaacaaat 830  Q
    ||||||||| | ||||||||||||    
T  24284800 aattcaaggcatatttcaacaaat 24284777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 546 - 593
Target Start/End: Original strand, 17230098 - 17230145
Alignment:
Q  546 tgttttaattttatttttaatgttttataagctgctttccatgtcact 593  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  17230098 tgttttaattttatttttaatgttttataagctgctttccatgtcact 17230145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 622 - 679
Target Start/End: Original strand, 17230171 - 17230229
Alignment:
Q  622 gccaactcaagagtggtaggagggtgtatca-cctaaagggtgttcacgtatctttttc 679  Q
    ||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||    
T  17230171 gccaactcaagagtggtaggagggtgtatcacccaaaagggtgttcacgtatctttttc 17230229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 688 - 832
Target Start/End: Complemental strand, 24272843 - 24272700
Alignment:
Q  688 tatagcaaaacccactaattattgatgcaagaaatattaacacacaaaacctttatttatatgaccaagtatttatatatttctttctattctctgttgt 787  Q
    ||||| ||||| |||||| ||||| ||||||||||| ||||||||||  ||||||| |||||   ||||| |||  |||||||||  || |||  | |||    
T  24272843 tatagtaaaactcactaactattggtgcaagaaatactaacacacaaggcctttatatatattgtcaagtctttgcatatttcttcatactctacgatgt 24272744  T
Q  788 gtgacttttttccaacactaattcaaggtaaatttcaacaaataa 832  Q
    | || ||||||||||||||||||||||  | ||||||||||||||    
T  24272743 gaga-ttttttccaacactaattcaagacatatttcaacaaataa 24272700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 688 - 755
Target Start/End: Original strand, 22827060 - 22827127
Alignment:
Q  688 tatagcaaaacccactaattattgatgcaagaaatattaacacacaaaacctttatttatatgaccaa 755  Q
    |||| ||||||||||||| ||||| |||||||||||| |||||||||  | |||||||||||||||||    
T  22827060 tataacaaaacccactaactattggtgcaagaaatatgaacacacaaggcttttatttatatgaccaa 22827127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 688 - 756
Target Start/End: Original strand, 22826665 - 22826733
Alignment:
Q  688 tatagcaaaacccactaattattgatgcaagaaatattaacacacaaaacctttatttatatgaccaag 756  Q
    |||||||||| ||||||| ||||| ||||||||||| ||||||| ||  | ||||||||||||||||||    
T  22826665 tatagcaaaatccactaactattggtgcaagaaatactaacacataaggcttttatttatatgaccaag 22826733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 688 - 756
Target Start/End: Complemental strand, 22841065 - 22840997
Alignment:
Q  688 tatagcaaaacccactaattattgatgcaagaaatattaacacacaaaacctttatttatatgaccaag 756  Q
    ||||| |||||||||||| ||||| ||||||||||| ||||||||||  | ||||||| ||||||||||    
T  22841065 tatagtaaaacccactaactattggtgcaagaaatactaacacacaaggcttttatttttatgaccaag 22840997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 61 - 143
Target Start/End: Complemental strand, 19145766 - 19145684
Alignment:
Q  61 agattttaacaaaattatgacctaaacttctaaatactatcaggcttcaattaactcataattctcacaaaatcaatatcata 143  Q
    ||||||||||  |||||||| |||||| |||||||||||||| ||||   ||||| || |||| |||| |||||| |||||||    
T  19145766 agattttaacttaattatgaactaaacatctaaatactatcaagctttgtttaacccaaaattatcactaaatcagtatcata 19145684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 61 - 143
Target Start/End: Complemental strand, 23673102 - 23673020
Alignment:
Q  61 agattttaacaaaattatgacctaaacttctaaatactatcaggcttcaattaactcataattctcacaaaatcaatatcata 143  Q
    ||||||||||  |||||||| |||||| |||||||||||||| ||||   ||||| || |||| |||| |||||| |||||||    
T  23673102 agattttaacttaattatgaactaaacatctaaatactatcaagctttgtttaacccaaaattatcactaaatcagtatcata 23673020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 339; Significance: 0; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 24 - 679
Target Start/End: Original strand, 198185 - 198856
Alignment:
Q  24 aacccaaaaggaaacaataagacagtaatgtaacagaagattttaacaaaattatgacctaaacttctaaatactatcaggcttcaattaactcataatt 123  Q
    ||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||    
T  198185 aacccaaaaggcaacaataagacagtaatgtaatagaagattttaacaaaattatgacctaaacttctaaatactatcaggtttcaattaacccataatt 198284  T
Q  124 ctcacaaaatcaatatca-----taatatgattaattgctacaccatgaaattttaattcctttgaagttggtcacaaataatttcaaatcaacacaaat 218  Q
    |||||||||||| |||||     |||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  198285 ctcacaaaatcagtatcataccctaatatgattaatttctacaccatgaaattctaattcctttgaagttggtcacaaataatttcaaatcaacacaaat 198384  T
Q  219 taccatctcattagggtttaacaaatcattt-nnnnnnnncattcaattttggagaaaaacattcaaaatgcagacagataaaccataaacacaaatcct 317  Q
    |||||||||||||||||||||||||||||||         ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  198385 taccatctcattagggtttaacaaatcatttaaaaaaaaacattcaattttggagaaaaacattcaaaatgcagacagataaaccataagcacaaatcct 198484  T
Q  318 agtcataaaatgaaatgaaaatttgagattaacgtcgcctaagaatagagagattgtgggaagaaaacaattgctgattgtgaaccgacagtgattgtga 417  Q
    | ||||||| | ||||||||||||||||||||| || |||||||||||||||||||||||||||||||| ||| ||||||||||| |||| ||  |||||    
T  198485 attcataaagtaaaatgaaaatttgagattaacctcacctaagaatagagagattgtgggaagaaaacagttgttgattgtgaactgacaatggctgtga 198584  T
Q  418 gacaacagttg-tgtaacgaaaacggattggttggaagagatcgcagaagaggacaagcagtgggaggagatcgcgtgttggtagagagagacttctcca 516  Q
    ||||||| ||| |||||||||||||| | |||||||||||||| || |||||||||||| |||||||||||||||| ||||  | ||||||||||||||     
T  198585 gacaacaattgttgtaacgaaaacgggtcggttggaagagatcacataagaggacaagcggtgggaggagatcgcgcgttg--atagagagacttctccg 198682  T
Q  517 gtgaggatagagagagatgaaagatatgatg------------ttttaattttatttttaatgttttataagctgctttccatgtcactaggcctcnnnn 604  Q
     ||||||||||| ||||||||||||||| ||            |||| |||||||||| ||||||||||||| || |||||||||||| ||| |||        
T  198683 atgaggatagagggagatgaaagatatgttgtgtcctttttcctttttattttattttaaatgttttataagttgttttccatgtcaccaggtctc-ttt 198781  T
Q  605 nnnnnnnnnnnnnnnnngccaactcaagagtggtaggagggtgtatcacctaaagggtgttcacgtatctttttc 679  Q
                     |||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||    
T  198782 ttttaatttttttttttgccaactcaagaatggtaggagggtgtatcacccaaagggtgttcacgtatctttttc 198856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 691 - 830
Target Start/End: Original strand, 37965516 - 37965656
Alignment:
Q  691 agcaaaacccactaattattgatgcaagaaatattaacacacaaa-acctttatttatatgaccaagtatttatatatttctttctattctctgttgtgt 789  Q
    ||||||||||| ||| ||||| ||||||||||| ||||||||||| || |||||||||||  |||||| |||  |||||||||  |||| || | ||||     
T  37965516 agcaaaacccattaactattggtgcaagaaatactaacacacaaagacttttatttatatatccaagtctttgcatatttcttcatattatccgatgtga 37965615  T
Q  790 gacttttttccaacactaattcaaggtaaatttcaacaaat 830  Q
    ||| |||| ||||||||||||||||| | ||||||||||||    
T  37965616 gacattttcccaacactaattcaaggcatatttcaacaaat 37965656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 688 - 827
Target Start/End: Original strand, 8761205 - 8761345
Alignment:
Q  688 tatagcaaaacccactaattattgatgcaagaaatattaacacacaaaacctttatttatatgacc-aagtatttatatatttctttctattctctgttg 786  Q
    |||| ||||| |||||||  |||| ||||||||||| |||||||||| || ||||||||||||||| ||||||||  |||||||||  |||| |||| ||    
T  8761205 tataacaaaatccactaacaattggtgcaagaaatactaacacacaagacttttatttatatgaccaaagtatttgcatatttcttcatattatctgatg 8761304  T
Q  787 tgtgacttttttccaacactaattcaaggtaaatttcaaca 827  Q
    || ||| |||| ||||||| ||||||||  | |||||||||    
T  8761305 tgggacattttcccaacacaaattcaagacatatttcaaca 8761345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 701 - 812
Target Start/End: Complemental strand, 10128584 - 10128473
Alignment:
Q  701 actaattattgatgcaagaaatattaacacacaaaacctttatttatatgaccaagtatttatatatttctttctattctctgttgtgtgacttttttcc 800  Q
    ||||| ||||| ||||||||||| |||||||||| || ||||||||||||||||||| |||  |||||||||  ||||||| | ||||  |  |||||||    
T  10128584 actaactattggtgcaagaaatactaacacacaagacttttatttatatgaccaagtctttccatatttcttcatattctccgatgtggaatatttttcc 10128485  T
Q  801 aacactaattca 812  Q
    ||||||||||||    
T  10128484 aacactaattca 10128473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 110; Significance: 6e-55; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 110; E-Value: 6e-55
Query Start/End: Original strand, 273 - 410
Target Start/End: Original strand, 19537875 - 19538012
Alignment:
Q  273 aaaaacattcaaaatgcagacagataaaccataaacacaaatcctagtcataaaatgaaatgaaaatttgagattaacgtcgcctaagaatagagagatt 372  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||| || ||||||||| ||||||||    
T  19537875 aaaaacattcaaaatgcagacagataaaccataaacacaaatcctagtcataaaataaaatgaaaattcgagattaacctcacctaagaatggagagatt 19537974  T
Q  373 gtgggaagaaaacaattgctgattgtgaaccgacagtg 410  Q
    |||||||||||||| ||| |||||||||||||||||||    
T  19537975 gtgggaagaaaacagttgttgattgtgaaccgacagtg 19538012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 694 - 818
Target Start/End: Original strand, 1716668 - 1716792
Alignment:
Q  694 aaaacccactaattattgatgcaagaaatattaacacacaaaacctttatttatatgaccaagtatttatatatttctttctattctctgttgtgtgact 793  Q
    ||||| |||||| |||||||||||||||||||||||||||| |||||||||||||||  ||||| |||| |||||| ||  ||||||  | |||| || |    
T  1716668 aaaactcactaactattgatgcaagaaatattaacacacaagacctttatttatatggtcaagtctttacatattttttcatattcttcgatgtgagaat 1716767  T
Q  794 tttttccaacactaattcaaggtaa 818  Q
    |||||||||||||| ||||| ||||    
T  1716768 tttttccaacactatttcaatgtaa 1716792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 24 - 76
Target Start/End: Original strand, 19537758 - 19537810
Alignment:
Q  24 aacccaaaaggaaacaataagacagtaatgtaacagaagattttaacaaaatt 76  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  19537758 aacccaaaaggcaacaataagacagtaatgtaacagaagattttaacaaaatt 19537810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 191 - 249
Target Start/End: Original strand, 19537813 - 19537871
Alignment:
Q  191 tcacaaataatttcaaatcaacacaaattaccatctcattagggtttaacaaatcattt 249  Q
    ||||||||||||| |||||| ||||||| ||||||||||||||||||||||||||||||    
T  19537813 tcacaaataatttgaaatcagcacaaatgaccatctcattagggtttaacaaatcattt 19537871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 688 - 755
Target Start/End: Complemental strand, 7961873 - 7961806
Alignment:
Q  688 tatagcaaaacccactaattattgatgcaagaaatattaacacacaaaacctttatttatatgaccaa 755  Q
    |||||||||||||||||| ||||| ||||||||||| ||||||||||  | |||||||||||||||||    
T  7961873 tatagcaaaacccactaactattggtgcaagaaatactaacacacaaggcttttatttatatgaccaa 7961806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 685 - 772
Target Start/End: Complemental strand, 11270056 - 11269969
Alignment:
Q  685 agttatagcaaaacccactaattattgatgcaagaaatattaacacacaaaacctttatttatatgaccaagtatttatatatttctt 772  Q
    ||||||||||||||||||||| ||||| |||||  |||| ||||||||||  | |||||||||||||||||   ||| ||||||||||    
T  11270056 agttatagcaaaacccactaactattggtgcaactaatactaacacacaaggcttttatttatatgaccaaacttttttatatttctt 11269969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 492 - 550
Target Start/End: Original strand, 19538065 - 19538123
Alignment:
Q  492 gtgttggtagagagagacttctccagtgaggatagagagagatgaaagatatgatgttt 550  Q
    |||||||||||||||||||| ||  ||||||||||| |||||||||||||||| |||||    
T  19538065 gtgttggtagagagagacttatctggtgaggatagatagagatgaaagatatgttgttt 19538123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 725 - 813
Target Start/End: Complemental strand, 1103217 - 1103129
Alignment:
Q  725 taacacacaaaacctttatttatatgaccaagtatttatatatttctttctattctctgttgtgtgacttttttccaacactaattcaa 813  Q
    ||||||||||  | |||||||||||| |||||| |||| |||||||||  |||| || | |||| ||| ||||||||||||||||||||    
T  1103217 taacacacaaggcttttatttatatggccaagtctttacatatttcttcatattatccgatgtgggacgtttttccaacactaattcaa 1103129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 718 - 830
Target Start/End: Complemental strand, 1345173 - 1345063
Alignment:
Q  718 gaaatattaacacacaaaacctttatttatatgaccaagtatttatatatttctttctattctctgttgtgtgacttttttccaacactaattcaaggta 817  Q
    |||||| |||||||||| | |||||||||||||| |||||  ||| |||||||||  ||||||  | |||| ||| |||||| ||||||||||||||  |    
T  1345173 gaaatactaacacacaagatctttatttatatgatcaagt-cttacatatttcttcttattcttcgatgtgagac-tttttctaacactaattcaagaca 1345076  T
Q  818 aatttcaacaaat 830  Q
     ||||||||||||    
T  1345075 tatttcaacaaat 1345063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 429 - 473
Target Start/End: Original strand, 19538017 - 19538061
Alignment:
Q  429 tgtaacgaaaacggattggttggaagagatcgcagaagaggacaa 473  Q
    |||||| ||||||| ||||| ||||||||||||||||||||||||    
T  19538017 tgtaactaaaacgggttggtcggaagagatcgcagaagaggacaa 19538061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 688 - 732
Target Start/End: Complemental strand, 36208040 - 36207996
Alignment:
Q  688 tatagcaaaacccactaattattgatgcaagaaatattaacacac 732  Q
    |||||||||||||||||| ||||| ||||||||||| ||||||||    
T  36208040 tatagcaaaacccactaactattggtgcaagaaatactaacacac 36207996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 623 - 657
Target Start/End: Original strand, 19538205 - 19538239
Alignment:
Q  623 ccaactcaagagtggtaggagggtgtatcacctaa 657  Q
    ||||||||||| |||||||||||||||||||||||    
T  19538205 ccaactcaagattggtaggagggtgtatcacctaa 19538239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 61 - 143
Target Start/End: Original strand, 41552008 - 41552090
Alignment:
Q  61 agattttaacaaaattatgacctaaacttctaaatactatcaggcttcaattaactcataattctcacaaaatcaatatcata 143  Q
    ||||||||||  |||||||| |||||| |||||||||||||| ||||   ||||| || |||| |||| |||||| |||||||    
T  41552008 agattttaacttaattatgaactaaacatctaaatactatcaagctttgtttaacccaaaattatcactaaatcagtatcata 41552090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 63; Significance: 6e-27; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 63; E-Value: 6e-27
Query Start/End: Original strand, 680 - 814
Target Start/End: Complemental strand, 32015267 - 32015133
Alignment:
Q  680 atatcagttatagcaaaacccactaattattgatgcaagaaatattaacacacaaaacctttatttatatgaccaagtatttatatatttctttctattc 779  Q
    ||||||| |||||||||||||||||| ||||| ||||||||||| ||||||||||||||||||||||| |  |||||| |||  |||| |||| |||||     
T  32015267 atatcagctatagcaaaacccactaactattggtgcaagaaatactaacacacaaaacctttatttatgttgccaagtctttgcatatatcttcctatta 32015168  T
Q  780 tctgttgtgtgacttttttccaacactaattcaag 814  Q
    | |  |||| ||||||||| |||||||||||||||    
T  32015167 ttttatgtgagacttttttacaacactaattcaag 32015133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 688 - 830
Target Start/End: Original strand, 53469686 - 53469828
Alignment:
Q  688 tatagcaaaacccactaattattgatgcaagaaatattaacacacaaaacctttatttatatgaccaagtatttatatatttctttctattctctgttgt 787  Q
    ||||| |||| ||||||| ||||||| ||||||||| |||||||||| || ||||||||||||||||||| |||  |||||||||  |||| |||| |||    
T  53469686 tatagtaaaatccactaactattgattcaagaaatactaacacacaagacttttatttatatgaccaagtctttgcatatttcttcatattatctgatgt 53469785  T
Q  788 gtgacttttttccaacactaattcaaggtaaatttcaacaaat 830  Q
       || |||| |||||| ||||| |||| | ||||||||||||    
T  53469786 agaacattttcccaacattaattaaaggcatatttcaacaaat 53469828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 694 - 755
Target Start/End: Complemental strand, 27272661 - 27272600
Alignment:
Q  694 aaaacccactaattattgatgcaagaaatattaacacacaaaacctttatttatatgaccaa 755  Q
    |||||||||||| ||||| ||||||||||| |||||||||| || |||||||||||||||||    
T  27272661 aaaacccactaactattggtgcaagaaatactaacacacaagacttttatttatatgaccaa 27272600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 688 - 772
Target Start/End: Complemental strand, 10396059 - 10395975
Alignment:
Q  688 tatagcaaaacccactaattattgatgcaagaaatattaacacacaaaacctttatttatatgaccaagtatttatatatttctt 772  Q
    ||||||| |||||||||| ||||||||||||||||| ||||||||||  | |||||||||||| || ||| |||  |||||||||    
T  10396059 tatagcataacccactaactattgatgcaagaaatactaacacacaaggcttttatttatatggccgagtctttgcatatttctt 10395975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 688 - 825
Target Start/End: Original strand, 53472575 - 53472710
Alignment:
Q  688 tatagcaaaacccactaattattgatgcaagaaatattaacacacaaaacctttatttatatgaccaagtatttatatatttctttctattctctgttgt 787  Q
    ||||||||||||||||||  |||| |||| |||||| |||||||| |||| ||||||||||||  ||||| |||  |||||||||  |||| || | |||    
T  53472575 tatagcaaaacccactaaccattggtgcatgaaatactaacacac-aaacttttatttatatg-gcaagtctttgcatatttcttcgtattatccgatgt 53472672  T
Q  788 gtgacttttttccaacactaattcaaggtaaatttcaa 825  Q
    |  || |||| ||||||||||||||||| | |||||||    
T  53472673 ggaacattttcccaacactaattcaaggcatatttcaa 53472710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 692 - 813
Target Start/End: Complemental strand, 13817035 - 13816914
Alignment:
Q  692 gcaaaacccactaattattgatgcaagaaatattaacacacaaaacctttatttatatgaccaagtatttatatatttctttctattctctgttgtgtga 791  Q
    ||||||| |||||| ||||  | ||||||||| ||||||| ||   |||||||||||||||||||| ||   |||||||||  ||||||  | |||| ||    
T  13817035 gcaaaactcactaactatttgtacaagaaataataacacataaggtctttatttatatgaccaagtcttcgcatatttcttcatattcttcgatgtgaga 13816936  T
Q  792 cttttttccaacactaattcaa 813  Q
    |||||| |||||| ||||||||    
T  13816935 ctttttcccaacattaattcaa 13816914  T

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Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 61 - 143
Target Start/End: Original strand, 55045307 - 55045389
Alignment:
Q  61 agattttaacaaaattatgacctaaacttctaaatactatcaggcttcaattaactcataattctcacaaaatcaatatcata 143  Q
    ||||||||||  |||||||| |||||| |||||||||||||| ||||   ||||| || |||| |||| |||||| |||||||    
T  55045307 agattttaacttaattatgaactaaacatctaaatactatcaagctttgtttaacccaaaattatcactaaatcagtatcata 55045389  T

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Target: chr3 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 688 - 755
Target Start/End: Complemental strand, 25889720 - 25889653
Alignment:
Q  688 tatagcaaaacccactaattattgatgcaagaaatattaacacacaaaacctttatttatatgaccaa 755  Q
    |||||||||||||||||| ||||| ||||||||||| ||||| |||| || |||||||||||||||||    
T  25889720 tatagcaaaacccactaactattggtgcaagaaatactaacatacaagacttttatttatatgaccaa 25889653  T

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Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 707 - 829
Target Start/End: Complemental strand, 31141481 - 31141359
Alignment:
Q  707 tattgatgcaagaaatattaacacacaaaacctttatttatatgaccaagtatttatatatttctttctattctctgttgtgtgacttttttccaacact 806  Q
    ||||| || |||||||| |||||| ||| || |||||||||||| | || | |||  ||||||||| |||||||||| |||| |||||||||| |||| |    
T  31141481 tattggtgtaagaaatactaacacgcaagacttttatttatatggctaaatctttgcatatttcttcctattctctgatgtgagacttttttctaacaat 31141382  T
Q  807 aattcaaggtaaatttcaacaaa 829  Q
    | || ||| || |||||||||||    
T  31141381 attttaagttatatttcaacaaa 31141359  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 61 - 143
Target Start/End: Original strand, 4270753 - 4270835
Alignment:
Q  61 agattttaacaaaattatgacctaaacttctaaatactatcaggcttcaattaactcataattctcacaaaatcaatatcata 143  Q
    ||||||||||  |||||||| |||||| |||||||||||||| ||||   ||||| || |||| |||| |||||| |||||||    
T  4270753 agattttaacttaattatgaactaaacatctaaatactatcaagctttgtttaacccaaaattatcactaaatcagtatcata 4270835  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 688 - 750
Target Start/End: Complemental strand, 30046515 - 30046454
Alignment:
Q  688 tatagcaaaacccactaattattgatgcaagaaatattaacacacaaaacctttatttatatg 750  Q
    |||||||||||| ||||| ||||| | ||||||||| ||||||||||| | ||||||||||||    
T  30046515 tatagcaaaaccgactaactattg-tacaagaaatactaacacacaaagcttttatttatatg 30046454  T

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Target: chr5 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 688 - 781
Target Start/End: Complemental strand, 26896676 - 26896583
Alignment:
Q  688 tatagcaaaacccactaattattgatgcaagaaatattaacacacaaaacctttatttatatgaccaagtatttatatatttctttctattctc 781  Q
    ||||||||||| || ||| |||| |||||||||||| ||||||||||   ||||||||||||| |||||| |||  ||||||||| ||||||||    
T  26896676 tatagcaaaacacattaactattaatgcaagaaatactaacacacaatgtctttatttatatggccaagtctttgcatatttcttcctattctc 26896583  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 688 - 752
Target Start/End: Complemental strand, 19670766 - 19670702
Alignment:
Q  688 tatagcaaaacccactaattattgatgcaagaaatattaacacacaaaacctttatttatatgac 752  Q
    |||||||||||||||||| ||||| | |||| |||| ||||||||||  | ||||||||||||||    
T  19670766 tatagcaaaacccactaactattggtacaagtaatactaacacacaaggcttttatttatatgac 19670702  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 685 - 772
Target Start/End: Original strand, 32795560 - 32795647
Alignment:
Q  685 agttatagcaaaacccactaattattgatgcaagaaatattaacacacaaaacctttatttatatgaccaagtatttatatatttctt 772  Q
    ||||||||||||||||||||| ||||| | |||| |||| | |||| ||| || |||||| ||||||| |||| |||  |||||||||    
T  32795560 agttatagcaaaacccactaactattggtacaagtaatactgacacgcaagacttttattaatatgactaagtctttgcatatttctt 32795647  T

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Target: scaffold0031 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0031
Description:

Target: scaffold0031; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 54 - 144
Target Start/End: Original strand, 40870 - 40959
Alignment:
Q  54 taacagaagattttaacaaaattatgacctaaacttctaaatactatcaggcttcaattaactcataattctcacaaaatcaatatcataa 144  Q
    |||||||| ||||||| | ||||||||  ||||||| |||||||||||| | |||| |||||||| | ||||||| |||||| ||||||||    
T  40870 taacagaa-attttaagataattatgaagtaaacttttaaatactatcaagtttcatttaactcaaagttctcactaaatcagtatcataa 40959  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 688 - 812
Target Start/End: Complemental strand, 33897306 - 33897182
Alignment:
Q  688 tatagcaaaacccactaattattgatgcaagaaatattaacacacaaaacctttatttatatgaccaagtatttatatatttctttctattctctgttgt 787  Q
    |||| ||||||| ||||||||||| || || ||||| |||||||||| || |||||||||||   ||| | |||| ||||||||| ||||| | || | |    
T  33897306 tataacaaaacctactaattattggtgtaaaaaatactaacacacaagacttttatttatattgtcaaatctttacatatttcttcctattatatgatat 33897207  T
Q  788 gtgacttttttccaacactaattca 812  Q
      ||| |||| ||||||||||||||    
T  33897206 tggacattttcccaacactaattca 33897182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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