View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2865-Insertion-3 (Length: 829)
Name: NF2865-Insertion-3
Description: NF2865
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2865-Insertion-3 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 710; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 710; E-Value: 0
Query Start/End: Original strand, 7 - 829
Target Start/End: Complemental strand, 48639862 - 48639027
Alignment:
| Q |
7 |
attaggaagtcagtccaagcctcaccttaccatttggaggttcaaagagtataattatggaacctggacaatggttggcatccaaacaagtcacaccaat |
106 |
Q |
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| T |
48639862 |
attaggaagtcagtccaagcctcaccttaccatttggaggttcaaagagtataattatggaacctggacaatggttggcatccaaacaagtcacaccaat |
48639763 |
T |
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| Q |
107 |
accagctatttcaaccttttggtttagaggcaaaatatgtagtttatcatatggaattcctatgttcatatttacaagtctggctgtaacagaggagcaa |
206 |
Q |
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| T |
48639762 |
accagctatttcaaccttttggtttagaggcaaaatatgtagtttatcatatggaattcctatgttcatatttactagtctggctgtaacagaggagcaa |
48639663 |
T |
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| Q |
207 |
tagatctttccatgattgaatgacttggtgagaccttgataatctgcattcacaaatgagagccaacagccaaagtacaaattggaaccctgattgtaat |
306 |
Q |
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| T |
48639662 |
tagatctttccatgattgaatgacttggtgagaccttgataatctgcattcaaaaatgagagccaacagccaaagtacaaattggaactctgattgtaat |
48639563 |
T |
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| Q |
307 |
aatctgctcataaggagctaaacacccgg---nnnnnnnnnnnttattgatagttttaaatttagagtctccaatgagttttatcatgtgatggagacac |
403 |
Q |
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| T |
48639562 |
aatctgctcataaggagcttaacacctggaaaaagaaaaaaaaatattgatagttttaaatttagagtctccaatgagttttatcatgtgatggagacac |
48639463 |
T |
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| Q |
404 |
taaaattcatgggagactctgattgtaataattttcggatgtggattgtcatataaaaatgtggattgtcttattacaatcagagttccacacttttgcc |
503 |
Q |
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| T |
48639462 |
taaaattcattggagactctgattgtaataattttcggatgtggattgtcatataaaagtgtggattgtcttattacaatcagagttccacacttttgcc |
48639363 |
T |
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| Q |
504 |
aaaggtattttagaaaaaagacaatccacacttttatatgacatatttacgcttctatgtgtccgatgcacagcactgccactctctctttcgaattgtc |
603 |
Q |
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| T |
48639362 |
aaaggtattttagaaaaaagacaatccacacttttatatgacatatttacacttctatgtgtccgatgcacagcactgccactctctctttcgaattgtc |
48639263 |
T |
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| Q |
604 |
tctcgcacagcatacatagcacaccacttgtccaaaactaaactgttacc----------aaattggtaaggtcttaattcataaaagccaaaacttaaa |
693 |
Q |
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| T |
48639262 |
tctcgcacagcatacatagcacaccacttgtccaaaactaaactgttaccaaattgtactaaattggtaaggtcttaattcataaaagccaaaacttaaa |
48639163 |
T |
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| Q |
694 |
ttctaaactgtaattaaagttcaatgaaaatagtacttaagttaatttgaatttcgaggttgaccaaattgaaacaattcatgaatatataacaaggatc |
793 |
Q |
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| T |
48639162 |
ttctaaactgtaattaaagttcaatgaaaatagtacttaaattaatttgaatttctaggttgaccaaattgaaacaattcatgaatatataacaaggatc |
48639063 |
T |
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| Q |
794 |
aatccaaaactatatattgcatagacgcagaaaggc |
829 |
Q |
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| T |
48639062 |
aatccaaaactatatattgcatagacgcagaaaggc |
48639027 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 265; Significance: 1e-147; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 265; E-Value: 1e-147
Query Start/End: Original strand, 19 - 332
Target Start/End: Original strand, 6164285 - 6164604
Alignment:
| Q |
19 |
gtccaagcctcaccttaccatttggaggttcaaagagtataattatggaacctggacaatggttggcatccaaacaagtcacaccaataccagctatttc |
118 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| | ||||||||||||||| |
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| T |
6164285 |
gtccaagcctcaccttaccattcggaggttcaaagagtataagtatggaacctggacaatggttggcatccaaacaagtcacgctaataccagctatttc |
6164384 |
T |
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| Q |
119 |
aaccttttggtttagaggcaaaatatgtagtttatcatatggaattcctatgttcatatttacaagtctggctgtaacagaggagcaatagatctttcca |
218 |
Q |
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| T |
6164385 |
aatcttttggtttagaggcaaaatatgtaatttatcatatggaattcctatgttcatatttacaagtctggctgtaacagaggagcaatagatctttcca |
6164484 |
T |
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| Q |
219 |
tgattgaatgacttggtgagaccttgataatctgcat------tcacaaatgagagccaacagccaaagtacaaattggaaccctgattgtaataatctg |
312 |
Q |
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| T |
6164485 |
tgattgaatgacttggtgagaccttgataatctgcattcacaatcacaaatgagagccaacagccaaagtacaaattggaactcttattgtaataatctg |
6164584 |
T |
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| Q |
313 |
ctcataaggagctaaacacc |
332 |
Q |
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| T |
6164585 |
ctcataaggagctaaacacc |
6164604 |
T |
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Back To:
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