View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2865-Insertion-6 (Length: 743)
Name: NF2865-Insertion-6
Description: NF2865
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2865-Insertion-6 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 315; Significance: 1e-177; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 382 - 743
Target Start/End: Complemental strand, 33818036 - 33817678
Alignment:
| Q |
382 |
acaaatatggttaactaaagccccatcttgggtgattttatcatgtatggtttctctcttatgatttactttcttttgtttatcttgtgtggtggttgta |
481 |
Q |
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| T |
33818036 |
acaaatatggttaattaaagccccatcttgggtgattttatcatgtatggtttctctctgatgatttactttctt--gtttatcttgtgcggtggttgta |
33817939 |
T |
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| Q |
482 |
gcctcttttttgttgacaatactcttttgtatagttgaggtaatgtactacttgtatttcactctctaattaagcaaccaatgaagaaaacttgtcatga |
581 |
Q |
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| T |
33817938 |
gcctcttttttgttgacaatactcttttgtatagttgaggtaatctactacttgtatttcactctctaattaaacaaccaatgaagaaaacttgtcatga |
33817839 |
T |
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| Q |
582 |
ttacaaaataattttttaaatcaagttttgcgaaataatattttctgaccttatgaaatgatacatgattagttggattactacttgcaatccatgacat |
681 |
Q |
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| T |
33817838 |
ttacaaaataattttttaaatcaagttttgcgaaataatattttctgaccttatgaaatgatacatgattagttggatttctacttgcaatccatgacat |
33817739 |
T |
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| Q |
682 |
ttatgtttcattgttgcacttagtggttcagggttaatatgtatatttttaaatgcaaagca |
743 |
Q |
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| T |
33817738 |
ttatg-ttaattgttgcacttagtggttcagggttaatatgtatatttttaaatgcaaagca |
33817678 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 8 - 319
Target Start/End: Complemental strand, 33818410 - 33818099
Alignment:
| Q |
8 |
tttcttggaagtaaaggttcaatgaaggtacgtagtcttgtttaaagagagacaaatagctgtctctatgatggttaacatttgtcaggcttcccctatt |
107 |
Q |
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| T |
33818410 |
tttcttggaagtgaaggttcaatgaaggtacgtagtcttgttaaaagagagacaaatagctgtctctatgatggttaacatttgtcaggcttcccctatt |
33818311 |
T |
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| Q |
108 |
ttgctcatttagaaaagaatacatatagatgggaaaaagttagacaacaatagtcaaagagagtttgatatgttcccaaacccaaccatggactaattca |
207 |
Q |
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| T |
33818310 |
ttgctcattgagaaaagaatacatatagatgggaaaaagttagacaacaatagtcaaagagagtttgatatgttcccaaacccaaccatggactaattca |
33818211 |
T |
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| Q |
208 |
aatattccttgcacttttgtttgttaattccccacaccaattccttgtcgctctttctatgattccttcaaggatatatgtaaaaagtaacatttccatg |
307 |
Q |
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| T |
33818210 |
aatattccttgcacttttgtttgttaattccccacaccaattccttgtcgctctttctatgattccttcaaggatatatgtgaaaagtaacatttccatg |
33818111 |
T |
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| Q |
308 |
catgtgatcatc |
319 |
Q |
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| T |
33818110 |
catgtgatcatc |
33818099 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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