View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2865-Insertion-7 (Length: 646)
Name: NF2865-Insertion-7
Description: NF2865
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2865-Insertion-7 |
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Alignment Details
Target: chr5 (Bit Score: 168; Significance: 1e-89; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 168; E-Value: 1e-89
Query Start/End: Original strand, 129 - 346
Target Start/End: Original strand, 27719873 - 27720100
Alignment:
| Q |
129 |
ccctggtaggcctcatttatatcttgaaaccgtgacgtggcggaatcctggtctttctgtttatccgggtgccatttctgtgtgttgaaaaagtagagat |
228 |
Q |
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| T |
27719873 |
ccctggtaggcctcatttatatcttgaaaccgtgacgtggcggaatcctggtctttctgtttatccgggtgccatttctgtgtgttgaaaaagtagagat |
27719972 |
T |
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| Q |
229 |
tattaacaatccca----------agnnnnnnnccacataaaacgcaacacaacgcaccaaagcaagacgaatgtaattagagcgaatagtatcatcatt |
318 |
Q |
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| T |
27719973 |
tattaacaatcccaaaacgaggttagaaaaaaaccacataaaacgcaacaaaacgcaccaaagcaagacgaatgtaattagagcgaatagtatcatcatt |
27720072 |
T |
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| Q |
319 |
tgcatcgtaatccacttctaatatcttg |
346 |
Q |
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| T |
27720073 |
tgcatcgtaatccacttctaatatcttg |
27720100 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 413 - 520
Target Start/End: Original strand, 27720167 - 27720274
Alignment:
| Q |
413 |
gatgatggagggtgagggttttgggaaccttgggtttagagagagctgagaggaaatcgaagttgagataggaatttgggtcgggaatttggtcgggttt |
512 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
27720167 |
gatgatggagggtgagggttttgggaaccttgggtttagagagagttgagaggaaatcgaagttgagataggaatttgggtcgggaatttgatcgggttt |
27720266 |
T |
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| Q |
513 |
ctgggaag |
520 |
Q |
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|||||||| |
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| T |
27720267 |
ctgggaag |
27720274 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 8 - 64
Target Start/End: Original strand, 27719752 - 27719808
Alignment:
| Q |
8 |
atatactttaggtaatactacttattaagacactaaattgaactttagcgactaaat |
64 |
Q |
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| T |
27719752 |
atatactttaggtaatactacttattaagacactaaattgaactttagcgactaaat |
27719808 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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