View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2865-Insertion-9 (Length: 510)

Name: NF2865-Insertion-9
Description: NF2865
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2865-Insertion-9
NF2865-Insertion-9
[»] chr1 (1 HSPs)
chr1 (10-510)||(43434648-43435160)


Alignment Details
Target: chr1 (Bit Score: 426; Significance: 0; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 426; E-Value: 0
Query Start/End: Original strand, 10 - 510
Target Start/End: Original strand, 43434648 - 43435160
Alignment:
Q  10 tatttgaattctctatggtagattaatcatagacaaaattagtagataatttgtaacaataaataacatgattataagaaaaagagtcattattagaagg 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43434648 tatttgaattctctatggtagattaatcatagacaaaattagtagataatttgtaacaataaataacatgattataagaaaaagagtcattattagaagg 43434747  T
Q  110 ttgtattcagtaggagtaaaaggtactttgggggtgtatataatatggtattttggtatgttacactcagatacatgtatatagtaagctttcggctatc 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43434748 ttgtattcagtaggagtaaaaggtactttgggggtgtatataatatggtattttggtatgttacactcagatacatgtatatagtaagctttcggctatc 43434847  T
Q  210 gatcactactcttcttgtaataaataaaaacaagggattatttacaagaaataaagag------------nnnnnnnnnnaagataaaaatatgagttat 297  Q
    ||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||                      ||||||||||||||||||||    
T  43434848 gatcagtactcttcttgtaataaataaaaataagggattatttacaagaaataaagagttttttttttttttttttttttaagataaaaatatgagttat 43434947  T
Q  298 gtactagatttgcagctaatttttgcattaaattaaagaacccaatctgaataagacaacaaaccattgaaaagtacaatatagttggtaatctaacata 397  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43434948 gtactagatttgcagctaatttttgcattaaattaaagaacccaatctgaataagacaacaaaccattgaaaagtacaatatagttggtaatctaacata 43435047  T
Q  398 tctaatctaggcttaatgtgacgcatataaatacaaattaacttcaatatcctttgtgtatttatatatgcacccacttcacacaaatcccaaagtggcc 497  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||    
T  43435048 tctaatctaggcttaatgtgacgcatataaatacaaattaacttcaatatcctttgtgtatttatatatacacccacttcacacaaatcccaaaatggcc 43435147  T
Q  498 tttttgatccaag 510  Q
    |||||||||||||    
T  43435148 tttttgatccaag 43435160  T

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