View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2865R-Insertion-2 (Length: 102)

Name: NF2865R-Insertion-2
Description: NF2865R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2865R-Insertion-2
NF2865R-Insertion-2
[»] chr5 (4 HSPs)
chr5 (9-99)||(14242232-14242322)
chr5 (9-94)||(14371004-14371089)
chr5 (50-94)||(41440131-41440175)
chr5 (50-89)||(41453294-41453333)


Alignment Details
Target: chr5 (Bit Score: 91; Significance: 1e-44; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 91; E-Value: 1e-44
Query Start/End: Original strand, 9 - 99
Target Start/End: Original strand, 14242232 - 14242322
Alignment:
Q  9 tgtcactccctttagtcttgttcaactctaaagcattatcgttaccaacatgtgtatcaccattcaaaagaggctcgtgaatagtttcatc 99  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14242232 tgtcactccctttagtcttgttcaactctaaagcattatcgttaccaacatgtgtatcaccattcaaaagaggctcgtgaatagtttcatc 14242322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 50; E-Value: 4e-20
Query Start/End: Original strand, 9 - 94
Target Start/End: Complemental strand, 14371089 - 14371004
Alignment:
Q  9 tgtcactccctttagtcttgttcaactctaaagcattatcgttaccaacatgtgtatcaccattcaaaagaggctcgtgaatagtt 94  Q
    |||||||||||||||||   |  ||||||||| ||||| | ||||||||||||||||||||||||||||||||||| |||||||||    
T  14371089 tgtcactccctttagtcgcttgtaactctaaaccattaccattaccaacatgtgtatcaccattcaaaagaggctcatgaatagtt 14371004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.0000000005
Query Start/End: Original strand, 50 - 94
Target Start/End: Original strand, 41440131 - 41440175
Alignment:
Q  50 ttaccaacatgtgtatcaccattcaaaagaggctcgtgaatagtt 94  Q
    ||||||| ||||||||||||||||||||||||||| |||| ||||    
T  41440131 ttaccaatatgtgtatcaccattcaaaagaggctcttgaagagtt 41440175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000002
Query Start/End: Original strand, 50 - 89
Target Start/End: Original strand, 41453294 - 41453333
Alignment:
Q  50 ttaccaacatgtgtatcaccattcaaaagaggctcgtgaa 89  Q
    ||||||| ||||||||||||||||||||||||||| ||||    
T  41453294 ttaccaatatgtgtatcaccattcaaaagaggctcttgaa 41453333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University