View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2865_high_2 (Length: 293)
Name: NF2865_high_2
Description: NF2865
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2865_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 263; Significance: 1e-147; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 263; E-Value: 1e-147
Query Start/End: Original strand, 7 - 277
Target Start/End: Complemental strand, 45929630 - 45929360
Alignment:
| Q |
7 |
gaagcataggcataaaataaatacatatcatatcaccaattcagacaagtgtgttttcaatgacctaacctcaaacataagattgtactttccatcccgg |
106 |
Q |
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| T |
45929630 |
gaagcattggcataaaataaatacatatcatatcaccaattcagacaagtgtgttttcaatgacctaacctcaaacataagattgtactttccatcccgg |
45929531 |
T |
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| Q |
107 |
tttctcattctcaaatatgattgacatgcttcagggtcttctccagggggtagaagatatatgtcatatgtttcctctttggtttcagtatgctctgcag |
206 |
Q |
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| T |
45929530 |
tttctcattctcaaatatgattgacatgcttcagggtcttctccagggggtagaagatatatgtcatatgtttcctctttggtttcagtatgctctgcag |
45929431 |
T |
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| Q |
207 |
caataactgccttgatttgatccaccgtcacaacctttgccgactaaaacagtagaaacaatcgaagtaat |
277 |
Q |
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| T |
45929430 |
caataactaccttgatttgatccaccgtcacaacctttgccgactaaaacagtagaaacaatcgaagtaat |
45929360 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 72 - 179
Target Start/End: Complemental strand, 28074115 - 28074008
Alignment:
| Q |
72 |
taacctcaaacataagattgtactttccatcccggtttctcattctcaaatatgattgacatgcttcagggtcttctccagggggtagaagatatatgtc |
171 |
Q |
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||||||||||||| ||| |||| || |||||| ||||| ||| || ||||| ||||| |||| ||| || ||||| ||||| ||||||||||||||||| |
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| T |
28074115 |
taacctcaaacatgagactgtatttcccatccttgtttcgcatccttaaatacgattggcatgtttctggatcttcaccaggaggtagaagatatatgtc |
28074016 |
T |
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| Q |
172 |
atatgttt |
179 |
Q |
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||| |||| |
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| T |
28074015 |
ataagttt |
28074008 |
T |
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