View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2865_high_3 (Length: 226)
Name: NF2865_high_3
Description: NF2865
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2865_high_3 |
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Alignment Details
Target: chr4 (Bit Score: 182; Significance: 2e-98; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 42684703 - 42684481
Alignment:
| Q |
1 |
ctgcacaacccgaatcaacttgatttgaattatgtatagccatgactcgaatcatgcactttcacnnnnnnn-tagtttatacacttatgctataagctt |
99 |
Q |
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| T |
42684703 |
ctgcacaactcgagtcaacttgatttgaattatgcatagccatgactcgaatcatgcactttcacaaaaaaaatagtttatacacttatgctataagctt |
42684604 |
T |
|
| Q |
100 |
ccaattgagctgtttatccaaacaattttgcaataaaatatgacctgcctattagggtctttggatctttcagcagacaaaaacgcaatagccatgaaat |
199 |
Q |
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| T |
42684603 |
ccaattgagctgtttatccaaacaattttgcaataaaatatgacctgcctattagggtctttggatctttcagcagacaaaaacgcaatagccatgaaat |
42684504 |
T |
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| Q |
200 |
aatcatcccaagacaagtatctg |
222 |
Q |
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||||||||||||||||||||||| |
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| T |
42684503 |
aatcatcccaagacaagtatctg |
42684481 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 142 - 220
Target Start/End: Complemental strand, 27119288 - 27119210
Alignment:
| Q |
142 |
acctgcctattagggtctttggatctttcagcagacaaaaacgcaatagccatgaaataatcatcccaagacaagtatc |
220 |
Q |
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| T |
27119288 |
acctgcctattagggtctttggatctttcagcagacaaaaacgcaatagccatgaaataatcatcccaagacaagtatc |
27119210 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 142 - 220
Target Start/End: Complemental strand, 21185690 - 21185612
Alignment:
| Q |
142 |
acctgcctattagggtctttggatctttcagcagacaaaaacgcaatagccatgaaataatcatcccaagacaagtatc |
220 |
Q |
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| T |
21185690 |
acctgcctattagggtctttggatctttcagcagacaaaaacgtaatagccatgaaataatcatcccaagacaagtatc |
21185612 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 85 - 123
Target Start/End: Complemental strand, 2482780 - 2482742
Alignment:
| Q |
85 |
ttatgctataagcttccaattgagctgtttatccaaaca |
123 |
Q |
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| T |
2482780 |
ttatgctataagcttcaaattaagctgtttatccaaaca |
2482742 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 82 - 123
Target Start/End: Complemental strand, 37138283 - 37138242
Alignment:
| Q |
82 |
cacttatgctataagcttccaattgagctgtttatccaaaca |
123 |
Q |
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| T |
37138283 |
cacttatgctataagcttcaaattaagttgtttatccaaaca |
37138242 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 82 - 123
Target Start/End: Original strand, 4920899 - 4920940
Alignment:
| Q |
82 |
cacttatgctataagcttccaattgagctgtttatccaaaca |
123 |
Q |
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||||||||||||||||| | |||| ||||||||||||||||| |
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|
| T |
4920899 |
cacttatgctataagctgcaaattaagctgtttatccaaaca |
4920940 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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