View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2865_low_1 (Length: 455)
Name: NF2865_low_1
Description: NF2865
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2865_low_1 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 384; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 384; E-Value: 0
Query Start/End: Original strand, 19 - 445
Target Start/End: Original strand, 51785456 - 51785880
Alignment:
| Q |
19 |
aaacgtacacggagacgaaaccacattggttctattattcttcttcaagtctttagttcaattctagagtctacatattattattatttggcagcagaca |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51785456 |
aaacgtacacggagacgaaaccacattggttctattattcttcttcaagtcttcagttcaattctagagtctacatattattattatttggcagcagaca |
51785555 |
T |
|
| Q |
119 |
ttgttccacattttagctcaaccaaattcattgtctctccatatctaccacatgcttttgttggcattaattattgaatttcaataatggattatatatc |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51785556 |
ttgttccacattttagctcaaccaaattcattgtctctccatatctaccacatgcttttgttggcattaattattgaatttcaataatggattatatatc |
51785655 |
T |
|
| Q |
219 |
acaatgttgacaatcaatctcttgcctttttccagtttgcagacaaatgtcaagtttgatcattgatcatatataactcatatattgatgataagagtat |
318 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
51785656 |
acaatgttgacaatcaatcccttgcctttttccagtttgcagacaaatgtcaagtttgatcattgatcatatataactc--atattgatgataagagtat |
51785753 |
T |
|
| Q |
319 |
gtacaagagtaacattaaacccttctnnnnnnnngactaaaaattatttaatcaagatctgaaatatctcatcacaatcatgtcttgtggtttacgtgat |
418 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51785754 |
gtacaagagtaacattaaacccttctgaaaaaaagactaaaaattatttaatcaagatctgaaatatctcatcacaatcatgtcttgtggtttacgtgat |
51785853 |
T |
|
| Q |
419 |
ttctagtaaaaggtttatgtacctatg |
445 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
51785854 |
ttctagtaaaaggtttatgtacctatg |
51785880 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University