View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2865_low_3 (Length: 295)
Name: NF2865_low_3
Description: NF2865
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2865_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 264; Significance: 1e-147; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 2 - 281
Target Start/End: Original strand, 42018288 - 42018567
Alignment:
| Q |
2 |
caagaagatacttatgctgctcgtgctgttgtctgtgctgcggtagcggtcactatcgcctataactgttacaaacaattgacataggaggaatcaactt |
101 |
Q |
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| T |
42018288 |
caagaagatacttatgctgctcttgctgttgtctgtgctgctgtatcggtcactatcgcctataactgctacaaacaattgacataggaggaatcaactt |
42018387 |
T |
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| Q |
102 |
tgtcagtgttattattatttaggtcagtttgcttaagctttaacatatttacatttatatcagcttcatgtttttgatgcttctgctgttatttagatca |
201 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42018388 |
tgtcagtgttattattatttaggtcagtttgcttaagctttaacatatttacatttatatcagcttcatgtttttgatgcttctgctgttatttagatca |
42018487 |
T |
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| Q |
202 |
atccttattggacatgcagggaacgagtgggagctcaatcgttaatgtgaatttgtgtgctttactgattgtggaatatt |
281 |
Q |
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| T |
42018488 |
atccttattggacatgcagggaacgagtgggagctcaatcgttaatgtgaatttgtgtgctttactgattgtggaatatt |
42018567 |
T |
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Target: chr3 (Bit Score: 260; Significance: 1e-145; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 2 - 281
Target Start/End: Original strand, 1251508 - 1251787
Alignment:
| Q |
2 |
caagaagatacttatgctgctcgtgctgttgtctgtgctgcggtagcggtcactatcgcctataactgttacaaacaattgacataggaggaatcaactt |
101 |
Q |
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|||||||||||||||||||||| |||||||||||||||||| ||| |||||||||||||||||||||| | ||||||||||||||||||||||||||||| |
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| T |
1251508 |
caagaagatacttatgctgctcttgctgttgtctgtgctgctgtatcggtcactatcgcctataactgctgcaaacaattgacataggaggaatcaactt |
1251607 |
T |
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| Q |
102 |
tgtcagtgttattattatttaggtcagtttgcttaagctttaacatatttacatttatatcagcttcatgtttttgatgcttctgctgttatttagatca |
201 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1251608 |
tgtcagtgttattattatttaggtcagtttgcttaagctttaacatatttacatttatatcagcttcatgtttttgatgcttctgctgttatttagatca |
1251707 |
T |
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| Q |
202 |
atccttattggacatgcagggaacgagtgggagctcaatcgttaatgtgaatttgtgtgctttactgattgtggaatatt |
281 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1251708 |
atccttattggacatgcagggaacgagtgggagctcaatcgttaatgtgaatttgtgtgctttactgattgtggaatatt |
1251787 |
T |
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