View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2865_low_5 (Length: 277)
Name: NF2865_low_5
Description: NF2865
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2865_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 25 - 260
Target Start/End: Original strand, 3448500 - 3448735
Alignment:
| Q |
25 |
agattaagacccatcataatctcaaccaaaatattaggatcattataattccgaacagcttgaacaatacccttaacacgtttaaaacaatcctcataac |
124 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3448500 |
agattaagacccatcataatctcaaccaaaacattaggatcattataattccgaacagcttgaacaatacccttaacacgtttaaaacaatcctcataac |
3448599 |
T |
|
| Q |
125 |
caaaaacctctgctcccacaaacacaccatgacaacccaactgcatcatcaacgctgcgtccgccggagtcacaatcccactggcagcaaaatgcacaac |
224 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||| |||||||||||||||||| |
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| T |
3448600 |
caaaaacctctgctcccacaaacacaccatgacaacccaactgcatcatcaacgccgcgtccgcgggagtcacaatcccaccggcagcaaaatgcacaac |
3448699 |
T |
|
| Q |
225 |
aggtaatctacccatctgtttcgtctgcgcaacaat |
260 |
Q |
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|||||||||||||||||||||||||||||||||||| |
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| T |
3448700 |
aggtaatctacccatctgtttcgtctgcgcaacaat |
3448735 |
T |
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