View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2865_low_9 (Length: 226)

Name: NF2865_low_9
Description: NF2865
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2865_low_9
NF2865_low_9
[»] chr4 (3 HSPs)
chr4 (1-222)||(42684481-42684703)
chr4 (142-220)||(27119210-27119288)
chr4 (142-220)||(21185612-21185690)
[»] chr8 (1 HSPs)
chr8 (85-123)||(2482742-2482780)
[»] chr3 (1 HSPs)
chr3 (82-123)||(37138242-37138283)
[»] chr1 (1 HSPs)
chr1 (82-123)||(4920899-4920940)


Alignment Details
Target: chr4 (Bit Score: 182; Significance: 2e-98; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 42684703 - 42684481
Alignment:
Q  1 ctgcacaacccgaatcaacttgatttgaattatgtatagccatgactcgaatcatgcactttcacnnnnnnn-tagtttatacacttatgctataagctt 99  Q
    ||||||||| ||| |||||||||||||||||||| ||||||||||||||||||||||||||||||        |||||||||||||||||||||||||||    
T  42684703 ctgcacaactcgagtcaacttgatttgaattatgcatagccatgactcgaatcatgcactttcacaaaaaaaatagtttatacacttatgctataagctt 42684604  T
Q  100 ccaattgagctgtttatccaaacaattttgcaataaaatatgacctgcctattagggtctttggatctttcagcagacaaaaacgcaatagccatgaaat 199  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42684603 ccaattgagctgtttatccaaacaattttgcaataaaatatgacctgcctattagggtctttggatctttcagcagacaaaaacgcaatagccatgaaat 42684504  T
Q  200 aatcatcccaagacaagtatctg 222  Q
    |||||||||||||||||||||||    
T  42684503 aatcatcccaagacaagtatctg 42684481  T

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Target: chr4; HSP #2
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 142 - 220
Target Start/End: Complemental strand, 27119288 - 27119210
Alignment:
Q  142 acctgcctattagggtctttggatctttcagcagacaaaaacgcaatagccatgaaataatcatcccaagacaagtatc 220  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27119288 acctgcctattagggtctttggatctttcagcagacaaaaacgcaatagccatgaaataatcatcccaagacaagtatc 27119210  T

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Target: chr4; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 142 - 220
Target Start/End: Complemental strand, 21185690 - 21185612
Alignment:
Q  142 acctgcctattagggtctttggatctttcagcagacaaaaacgcaatagccatgaaataatcatcccaagacaagtatc 220  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  21185690 acctgcctattagggtctttggatctttcagcagacaaaaacgtaatagccatgaaataatcatcccaagacaagtatc 21185612  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 85 - 123
Target Start/End: Complemental strand, 2482780 - 2482742
Alignment:
Q  85 ttatgctataagcttccaattgagctgtttatccaaaca 123  Q
    |||||||||||||||| |||| |||||||||||||||||    
T  2482780 ttatgctataagcttcaaattaagctgtttatccaaaca 2482742  T

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Target: chr3 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 82 - 123
Target Start/End: Complemental strand, 37138283 - 37138242
Alignment:
Q  82 cacttatgctataagcttccaattgagctgtttatccaaaca 123  Q
    ||||||||||||||||||| |||| || ||||||||||||||    
T  37138283 cacttatgctataagcttcaaattaagttgtttatccaaaca 37138242  T

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Target: chr1 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 82 - 123
Target Start/End: Original strand, 4920899 - 4920940
Alignment:
Q  82 cacttatgctataagcttccaattgagctgtttatccaaaca 123  Q
    ||||||||||||||||| | |||| |||||||||||||||||    
T  4920899 cacttatgctataagctgcaaattaagctgtttatccaaaca 4920940  T

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